Contig 001269:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P21Sequence230013202 (2)586001269 (2)ref|XP_006338094.1|6e-33PREDICTED: ZF-HD homeobox protein At4g24660-like [Solanum tuberosum]
JMSF002P17Sequence245013202 (2)573001269 (2)ref|XP_010266504.1|1e-25PREDICTED: zinc-finger homeodomain protein 1-like [Nelumbo nucifera]

Alignment

This contig is upended


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rJMSF001P21+                   CACGTCGNCCCTCACCGCCCGCTGGCCCTNCNGTGCACCTCCCGCGACGAC
rJMSF002P17+                                    CCCGCTGGCCCTCCCGTCCACCTCCCGGGANGNC
                      ____________________________________________________________
consensus                      CACGTCGNCCCTCACCGCCCGCTGGCCCTCCCGTGCACCTCCCGGGACGAC
 
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rJMSF001P21+          GACGTATCCAACCCCAGCAGCAGCGGCGGCGGCGGCGGAGAAGGCGGCAGCGGCGGCTCC
rJMSF002P17+          GACGTATCCAACCCCAGCAGCAGCGGCGGCGGCGGCGGAGAAGGCGGCAGCGGCGGCTCC
                      ____________________________________________________________
consensus             GACGTATCCAACCCCAGCAGCAGCGGCGGCGGCGGCGGAGAAGGCGGCAGCGGCGGCTCC
 
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rJMSF001P21+          AAGAAGCGATTCCGAACCAAATTCTCCCAAGAACAAAAAGACAAAATGCTCGCCTTCGCC
rJMSF002P17+          AAGAAGCGATTCCGAACCAAATTNTCCCAAGAACAAAAAGACAAAATGCTCGCNTTCGCC
                      ____________________________________________________________
consensus             AAGAAGCGATTCCGAACCAAATTCTCCCAAGAACAAAAAGACAAAATGCTCGCCTTCGCC
 
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rJMSF001P21+          GAGCGGCTAGAATGGCGCATCCAGAAACACGACGAGGAAGCCGTCCAAGAATTCTGCGCC
rJMSF002P17+          GAGCGGCTAGAATGGNGCATCCAGAAACACGACGAGGAAGCCGTCCAAGAATTCTGCGNC
                      ____________________________________________________________
consensus             GAGCGGCTAGAATGGCGCATCCAGAAACACGACGAGGAAGCCGTCCAAGAATTCTGCGCC
 
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rJMSF001P21+          ACCACTAACGTTCGACGCCAAGTCTTCAAAGTCTGGATGCACAACAACAAGCACACCCTC
rJMSF002P17+          ANCANTAACGTTNGACGCCAAGTCTTCAAAGTCTGGATGCACAACAACAAGCACACCCTC
                      ____________________________________________________________
consensus             ACCACTAACGTTCGACGCCAAGTCTTCAAAGTCTGGATGCACAACAACAAGCACACCCTC
 
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rJMSF001P21+          GGTAAAAAAACCCTAATCCCCCCTTCTTCTCCAGGTACTCCTAGCTATGGCGGNTAGGCT
rJMSF002P17+          GGT-AAAAAACCNTAATCCCCCNTTNTTCTCCAGGTACTCCTAGCTATGGCGGCTAGGNT
                      ____________________________________________________________
consensus             GGTAAAAAAACCCTAATCCCCCCTTCTTCTCCAGGTACTCCTAGCTATGGCGGCTAGGCT
 
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rJMSF001P21+          AAGACAATGTACGATGAGACATTATATTCTTTAACCGCATGTAAAATCGGTTGAGAATTA
rJMSF002P17+          AAGACAATGTACGATGAGACATTATATTCTTTAACCGCATGTAAAATCGGTTGAGAATTA
                      ____________________________________________________________
consensus             AAGACAATGTACGATGAGACATTATATTCTTTAACCGCATGTAAAATCGGTTGAGAATTA
 
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rJMSF001P21+          AGGTTAGGACTAGATTAGGGTTGTTATTACACCGACCACCTTAATTAACTCACTACTATT
rJMSF002P17+          AGGTTAGGACTAGATTAGGGTTGTTATTACACCGACCACCTTAATTAACTCACTACTATT
                      ____________________________________________________________
consensus             AGGTTAGGACTAGATTAGGGTTGTTATTACACCGACCACCTTAATTAACTCACTACTATT
 
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rJMSF001P21+          GTCTCACTCCCATCACCCCCATCCCTTTCTTTCATTCTTCTATTTAGATATTCCAGTCTC
rJMSF002P17+          GTCTCACTCCCATCACCCCCATCCCTTTCTTTCATTCTTCTATTTAGATATTCCAGTCTC
                      ____________________________________________________________
consensus             GTCTCACTCCCATCACCCCCATCCCTTTCTTTCATTCTTCTATTTAGATATTCCAGTCTC
 
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rJMSF001P21+          ATCACTCCCCCGCCACCCATCATTAAATTATTGTTCTTTTTCCCATCATTCCTTG     
rJMSF002P17+          ATCACTCCCCCGCCACCCATCATTAAATTATTGTTCTTTTTCCCATCATTCCTTGATTTA
                      ____________________________________________________________
consensus             ATCACTCCCCCGCCACCCATCATTAAATTATTGTTCTTTTTCCCATCATTCCTTGATTTA