Contig 001266:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF002K23+                                           AGATCAACTGTAGTTGGGTTGAAAAGT
                      ____________________________________________________________
consensus                                              AGATCAACTGTAGTTGGGTTGAAAAGT
 
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rJMSF002K23+          AGTGAGAATGAGAAGGAAATCAAAATCCAGGCCATGAGGAGGAAAAGAAACTGCTGATTT
                      ____________________________________________________________
consensus             AGTGAGAATGAGAAGGAAATCAAAATCCAGGCCATGAGGAGGAAAAGAAACTGCTGATTT
 
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rJMSF002K23+          TAAAAGTGGAGAAATTGGAGGCTAGTAAGGATGATCAGAAGGTAGAAAAGGAAGCAAAGG
                      ____________________________________________________________
consensus             TAAAAGTGGAGAAATTGGAGGCTAGTAAGGATGATCAGAAGGTAGAAAAGGAAGCAAAGG
 
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rJMFF049J13+                   TCAGAGCATTGAAGAATAAACTTCAGGATTGGGATAAGGAGAAAGCGGAGC
rJMFF050N15+                                          CAGGATTGGGATAAGGAGAAAGCGGAGC
rJMSF002K23+          AGCTGCACATCAGAGCATTGAAGAATAAACTTCAGGATTGGGATAAGGAGAAAGCGGAGC
                      ____________________________________________________________
consensus             AGCTGCACATCAGAGCATTGAAGAATAAACTTCAGGATTGGGATAAGGAGAAAGCGGAGC
 
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rJMFF049J13+          TGGCAAAGAAAGAGATGGAGGCGAGGGTGGATGAAATGAAAGGGAGAGTGCTAGAGATTG
rJMFF050N15+          TGGCAAAGAAAGAGATGGAGGCGAGGGTGGATGAAATGAAAGGGAGAGTGCTAGAGATTG
rJMSF002K23+          TGGCAAAGAAAGAGATGGAGGCGAGGGTGGATGAAATGAAAGGGAGAGTGCTAGAGATTG
                      ____________________________________________________________
consensus             TGGCAAAGAAAGAGATGGAGGCGAGGGTGGATGAAATGAAAGGGAGAGTGCTAGAGATTG
 
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rJMFF049J13+          AGAAGAAGTTAAAGGATAAGGAACTTCTGATTGCAGATGATCACACCAATGGGATTCCAG
rJMFF050N15+          AGAAGAAGTTAAAGGATAAGGAACTTCTGATTGCAGATGATCACACCAATGGGATTCCAG
rJMSF002K23+          AGAAGAAGTTAAAGGATAAGGAACTACTGATTGCAGATGATCACACCAATGGGATTCCAG
                      ____________________________________________________________
consensus             AGAAGAAGTTAAAGGATAAGGAACTTCTGATTGCAGATGATCACACCAATGGGATTCCAG
 
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rJMFF049J13+          TGGCAGAGGGTAAGAATTATGGCTTCAAATTGGAGTGGCCATTGGTGATTGGGTCAGCAG
rJMFF050N15+          TGGCAGAGGGTAAGAATTATGGCTTCAAATTGGAGTGGCCATTGGTGATTGGGTCAGCAG
rJMSF002K23+          TGGCAGAGGGTAAGAATTATGGCTTCAAATTGGAGTGGCCATTGGTGATTGGGTCAGCAG
                      ____________________________________________________________
consensus             TGGCAGAGGGTAAGAATTATGGCTTCAAATTGGAGTGGCCATTGGTGATTGGGTCAGCAG
 
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rJMFF049J13+          TTGCAGCTATTGCTCTAGCCACAACAGTGATTTACCTGAGAAACGCTAGGAAAACATAGA
rJMFF050N15+          TTGCAGCTATTGCTCTAGCCACAACAGTGATTTCCCTGAGAAACGCTAGGAAAACATAGA
rJMSF002K23+          TTGCAGCTATTGCTCTAGCCACAACAGTGATCTACCTGAGAAACGCTAGGAAAACATAGA
                      ____________________________________________________________
consensus             TTGCAGCTATTGCTCTAGCCACAACAGTGATTTACCTGAGAAACGCTAGGAAAACATAGA
 
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rJMFF049J13+          TTGGTAGTTCCCCAAAATAAGAAGCAGAGTTGCTGAAACTCAGGTTGAGATTTTGGTGTC
rJMFF050N15+          TTGGTAGTTCCCCAAAATAAGAAGCAGAGTTGCTGAAACTCAGGTTGAGATTTTGGTGTT
rJMSF002K23+          TTGGTAGTTCCACAAAATAAGAAGCAGAGTTGCTGAAACTCAGGTTGAGATTCTGGTGTC
                      ____________________________________________________________
consensus             TTGGTAGTTCCCCAAAATAAGAAGCAGAGTTGCTGAAACTCAGGTTGAGATTTTGGTGTC
 
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rJMFF049J13+          TAACCCCTCCCCGGATGATAGAATTTTTGATACCCATGCTGTTTTTTGCAGGTCTTTGTT
rJMFF050N15+          TAACCACTCCCCGGATGATAGAATTTTTGATACCCATGCTGTTTTTTGCAGGTCTTTGTT
rJMSF002K23+          TAACCACTCCACGGATGATAGAATTTTTGATACACATGCTGTTTTTTGCAGGTCTTTGTT
                      ____________________________________________________________
consensus             TAACCACTCCCCGGATGATAGAATTTTTGATACCCATGCTGTTTTTTGCAGGTCTTTGTT
 
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rJMFF049J13+          ATGAGGTTTTGTCTTTTCCTTAAACTAAGATTGGGTTGTCAATGTTGCTTCGGAGTAATA
rJMFF050N15+          ATGAGGTTTTGTCTTTTCCTTAAACTAAGATTGGGTTGTCAATGTTGCTTCGGAGTAATA
rJMSF002K23+          ATGAGGTTTTGTCTTTTCCTTAAACTAAGATTGGGTTGTCAATGTTGCTTCGGAGTAATA
                      ____________________________________________________________
consensus             ATGAGGTTTTGTCTTTTCCTTAAACTAAGATTGGGTTGTCAATGTTGCTTCGGAGTAATA
 
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rJMFF049J13+          TGAATACATATTTTGTGTGCT                                       
rJMFF050N15+          TGAATACATATTTTGTGTGCT                                       
rJMSF002K23+          TGAATACATATTTTGTGTGCTAAACTAGATTTTCCTTTAATCCACACAACTTTTGATAGC
                      ____________________________________________________________
consensus             TGAATACATATTTTGTGTGCTAAACTAGATTTTCCTTTAATCCACACAACTTTTGATAGC
 
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rJMSF002K23+          ATTGTAAGAGTACCGTTTCTGTTAGGTGCAAAGATGCTGATATCCATTTTTATAGGAGTA
                      ____________________________________________________________
consensus             ATTGTAAGAGTACCGTTTCTGTTAGGTGCAAAGATGCTGATATCCATTTTTATAGGAGTA