Contig 001263:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001L09Sequence460009159 (2)ref|XP_004238972.1|2e-22PREDICTED: uncharacterized protein At1g26090, chloroplastic [Solanum lycopersic749001263 (2)ref|XP_009761782.1|1e-45PREDICTED: uncharacterized protein At1g26090, chloroplastic isoform X2 [Nicotia
JMSF003H11Sequence232009159 (2)747001263 (2)ref|XP_009761782.1|6e-45PREDICTED: uncharacterized protein At1g26090, chloroplastic isoform X2 [Nicotia

Alignment

This contig is upended


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rJMSF003H11+                                           TTACACTTTCATTCCACATCTCTCGAT
rJMSF001L09+                                         CCTTACACTTTCATTCCACATCTCTCGAT
                      ____________________________________________________________
consensus                                            CCTTACACTTTCATTCCACATCTCTCGAT
 
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rJMSF003H11+          AGATACCCGCCTAGAATGGAATCATATAATGCAGGATGCTTGTAGTGAGGATGCCCGCAA
rJMSF001L09+          AGATACCCGCCTAGAATGGAATCATATAATGCAGGATGCTTGTAGTGAGGATGCCCGCAA
                      ____________________________________________________________
consensus             AGATACCCGCCTAGAATGGAATCATATAATGCAGGATGCTTGTAGTGAGGATGCCCGCAA
 
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rJMSF003H11+          ACTTCTTGCTGTAACAAGCCATGGGACGAGGATCCATCCTGTTAAGTTTGATCCGGCCAA
rJMSF001L09+          ACTTCTTGCTGTAACAAGCCATGGGACGAGGATCCATCCTGTTAAGTTTGATCCGGCCAA
                      ____________________________________________________________
consensus             ACTTCTTGCTGTAACAAGCCATGGGACGAGGATCCATCCTGTTAAGTTTGATCCGGCCAA
 
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rJMSF003H11+          TAAAACTGTCACGCTTCTCATGCCTGGTTTTGACAAATCGGAAATCAAACTATACCAATT
rJMSF001L09+          TAAAACTGTCACGCTTCTCATGCCTGGTTTTGACAAATCGGAAATCAAACTATACCAATT
                      ____________________________________________________________
consensus             TAAAACTGTCACGCTTCTCATGCCTGGTTTTGACAAATCGGAAATCAAACTATACCAATT
 
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rJMSF003H11+          TAGAGGGGGATCTGAGTTGTTGGTCGAGGCAGGTGATCAAAGACGCGCCATTTTTCTGCC
rJMSF001L09+          TAGAGGGGGATCTGAGTTGTTGGTCGAGGCAGGTGATCAAAGACGCGCCATTTTTCTGCC
                      ____________________________________________________________
consensus             TAGAGGGGGATCTGAGTTGTTGGTCGAGGCAGGTGATCAAAGACGCGCCATTTTTCTGCC
 
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rJMSF003H11+          CTCGAAGCTTCAAGGCAAGGTTGTAGCTGCCAAGTTTATCGAAAGAAGTCTTGTTATAAC
rJMSF001L09+          CTCGAAGCTTCAAGGCAAGGTTGTAGCTGCCAAGTTTATCGAAAGAAGTCTTGTTATAAC
                      ____________________________________________________________
consensus             CTCGAAGCTTCAAGGCAAGGTTGTAGCTGCCAAGTTTATCGAAAGAAGTCTTGTTATAAC
 
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rJMSF003H11+          CATGCAATAACAAAAAGCTTCAAGCTTTAAGAATGGCAACAGGTCAAAGGTAACAAGCTA
rJMSF001L09+          CATGCAATAACAAAAAGCTTCAAGCTTTAAGAATGGCAACAGGTCAAAGGTAACAAGCTA
                      ____________________________________________________________
consensus             CATGCAATAACAAAAAGCTTCAAGCTTTAAGAATGGCAACAGGTCAAAGGTAACAAGCTA
 
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rJMSF003H11+          CAGGAGCCACCAATTTCTAGTTGACAGTCTTTGTCCAAGAAGATGGAACTCTTTACTGGA
rJMSF001L09+          CAGGAGCCACCAATTTCTAGTTGACAGTCTTTGTCCAAGAAGATGGAACTCTTTACTGGA
                      ____________________________________________________________
consensus             CAGGAGCCACCAATTTCTAGTTGACAGTCTTTGTCCAAGAAGATGGAACTCTTTACTGGA
 
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rJMSF003H11+          TTAGCTTGTGTCCAGAAGAATGAAGAATTAGAGAGACTGAAAAAGAAGTGAAAACAACCA
rJMSF001L09+          TTAGCTTGTGTCCAGAAGAATGAAGAATTAGAGAGACTGAAAAAGAAGTGAAAACAACCA
                      ____________________________________________________________
consensus             TTAGCTTGTGTCCAGAAGAATGAAGAATTAGAGAGACTGAAAAAGAAGTGAAAACAACCA
 
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rJMSF003H11+          GAAGAGCGGTAAATTTGAGCATTAAATAGGCGGCACCCATGTTTCTTGTCCTGTGTCTGT
rJMSF001L09+          GAAGAGCGGTAAATTTGAGCATTAAATAGGCGGCACCCATGTTTCTTGTCCTGTGTCTGT
                      ____________________________________________________________
consensus             GAAGAGCGGTAAATTTGAGCATTAAATAGGCGGCACCCATGTTTCTTGTCCTGTGTCTGT
 
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rJMSF003H11+          AACTTCTTGCCATAGGTATATCTAGTTCTGACACTTACATAGTAATGGATTGGGAAACTT
rJMSF001L09+          AACTTCTTGCCATAGGTATATCTAGTTCTGACACTTACATAGTAATGGATTGGGAAACTT
                      ____________________________________________________________
consensus             AACTTCTTGCCATAGGTATATCTAGTTCTGACACTTACATAGTAATGGATTGGGAAACTT
 
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rJMSF003H11+          GAATTGTGGGATTATTATGAAACGAGAAATGATCAGATTTCTGGCTGGTTTAGGTGACTA
rJMSF001L09+          GAATTGTGGGATTATTATGAAACGAGAAATGATCAGATTTCTGGCTGGTTTAGGTGACTA
                      ____________________________________________________________
consensus             GAATTGTGGGATTATTATGAAACGAGAAATGATCAGATTTCTGGCTGGTTTAGGTGACTA
 
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rJMSF003H11+          TGAAACACACAGAAAAGCATATTTTAGGAAATTTGACTAATTTGATATTAAAAGTAGTCT
rJMSF001L09+          TGAAACACACAGAAAAGCATATTTTAGGAAATTTGACTAATTTGATATTAAAAGTAGTCT
                      ____________________________________________________________
consensus             TGAAACACACAGAAAAGCATATTTTAGGAAATTTGACTAATTTGATATTAAAAGTAGTCT