Contig 001263:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001L09Sequence460009159 (2)ref|XP_004238972.1|2e-22PREDICTED: uncharacterized protein At1g26090, chloroplastic [Solanum lycopersic749001263 (2)ref|XP_009761782.1|1e-45PREDICTED: uncharacterized protein At1g26090, chloroplastic isoform X2 [Nicotia
JMSF003H11Sequence232009159 (2)747001263 (2)ref|XP_009761782.1|6e-45PREDICTED: uncharacterized protein At1g26090, chloroplastic isoform X2 [Nicotia

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF003H11+ TTACACTTTCATTCCACATCTCTCGAT
rJMSF001L09+ CCTTACACTTTCATTCCACATCTCTCGAT
                      ____________________________________________________________
consensus CCTTACACTTTCATTCCACATCTCTCGAT
 
. : . : . : . : . : . :
rJMSF003H11+ AGATACCCGCCTAGAATGGAATCATATAATGCAGGATGCTTGTAGTGAGGATGCCCGCAA
rJMSF001L09+ AGATACCCGCCTAGAATGGAATCATATAATGCAGGATGCTTGTAGTGAGGATGCCCGCAA
                      ____________________________________________________________
consensus AGATACCCGCCTAGAATGGAATCATATAATGCAGGATGCTTGTAGTGAGGATGCCCGCAA
 
. : . : . : . : . : . :
rJMSF003H11+ ACTTCTTGCTGTAACAAGCCATGGGACGAGGATCCATCCTGTTAAGTTTGATCCGGCCAA
rJMSF001L09+ ACTTCTTGCTGTAACAAGCCATGGGACGAGGATCCATCCTGTTAAGTTTGATCCGGCCAA
                      ____________________________________________________________
consensus ACTTCTTGCTGTAACAAGCCATGGGACGAGGATCCATCCTGTTAAGTTTGATCCGGCCAA
 
. : . : . : . : . : . :
rJMSF003H11+ TAAAACTGTCACGCTTCTCATGCCTGGTTTTGACAAATCGGAAATCAAACTATACCAATT
rJMSF001L09+ TAAAACTGTCACGCTTCTCATGCCTGGTTTTGACAAATCGGAAATCAAACTATACCAATT
                      ____________________________________________________________
consensus TAAAACTGTCACGCTTCTCATGCCTGGTTTTGACAAATCGGAAATCAAACTATACCAATT
 
. : . : . : . : . : . :
rJMSF003H11+ TAGAGGGGGATCTGAGTTGTTGGTCGAGGCAGGTGATCAAAGACGCGCCATTTTTCTGCC
rJMSF001L09+ TAGAGGGGGATCTGAGTTGTTGGTCGAGGCAGGTGATCAAAGACGCGCCATTTTTCTGCC
                      ____________________________________________________________
consensus TAGAGGGGGATCTGAGTTGTTGGTCGAGGCAGGTGATCAAAGACGCGCCATTTTTCTGCC
 
. : . : . : . : . : . :
rJMSF003H11+ CTCGAAGCTTCAAGGCAAGGTTGTAGCTGCCAAGTTTATCGAAAGAAGTCTTGTTATAAC
rJMSF001L09+ CTCGAAGCTTCAAGGCAAGGTTGTAGCTGCCAAGTTTATCGAAAGAAGTCTTGTTATAAC
                      ____________________________________________________________
consensus CTCGAAGCTTCAAGGCAAGGTTGTAGCTGCCAAGTTTATCGAAAGAAGTCTTGTTATAAC
 
. : . : . : . : . : . :
rJMSF003H11+ CATGCAATAACAAAAAGCTTCAAGCTTTAAGAATGGCAACAGGTCAAAGGTAACAAGCTA
rJMSF001L09+ CATGCAATAACAAAAAGCTTCAAGCTTTAAGAATGGCAACAGGTCAAAGGTAACAAGCTA
                      ____________________________________________________________
consensus CATGCAATAACAAAAAGCTTCAAGCTTTAAGAATGGCAACAGGTCAAAGGTAACAAGCTA
 
. : . : . : . : . : . :
rJMSF003H11+ CAGGAGCCACCAATTTCTAGTTGACAGTCTTTGTCCAAGAAGATGGAACTCTTTACTGGA
rJMSF001L09+ CAGGAGCCACCAATTTCTAGTTGACAGTCTTTGTCCAAGAAGATGGAACTCTTTACTGGA
                      ____________________________________________________________
consensus CAGGAGCCACCAATTTCTAGTTGACAGTCTTTGTCCAAGAAGATGGAACTCTTTACTGGA
 
. : . : . : . : . : . :
rJMSF003H11+ TTAGCTTGTGTCCAGAAGAATGAAGAATTAGAGAGACTGAAAAAGAAGTGAAAACAACCA
rJMSF001L09+ TTAGCTTGTGTCCAGAAGAATGAAGAATTAGAGAGACTGAAAAAGAAGTGAAAACAACCA
                      ____________________________________________________________
consensus TTAGCTTGTGTCCAGAAGAATGAAGAATTAGAGAGACTGAAAAAGAAGTGAAAACAACCA
 
. : . : . : . : . : . :
rJMSF003H11+ GAAGAGCGGTAAATTTGAGCATTAAATAGGCGGCACCCATGTTTCTTGTCCTGTGTCTGT
rJMSF001L09+ GAAGAGCGGTAAATTTGAGCATTAAATAGGCGGCACCCATGTTTCTTGTCCTGTGTCTGT
                      ____________________________________________________________
consensus GAAGAGCGGTAAATTTGAGCATTAAATAGGCGGCACCCATGTTTCTTGTCCTGTGTCTGT
 
. : . : . : . : . : . :
rJMSF003H11+ AACTTCTTGCCATAGGTATATCTAGTTCTGACACTTACATAGTAATGGATTGGGAAACTT
rJMSF001L09+ AACTTCTTGCCATAGGTATATCTAGTTCTGACACTTACATAGTAATGGATTGGGAAACTT
                      ____________________________________________________________
consensus AACTTCTTGCCATAGGTATATCTAGTTCTGACACTTACATAGTAATGGATTGGGAAACTT
 
. : . : . : . : . : . :
rJMSF003H11+ GAATTGTGGGATTATTATGAAACGAGAAATGATCAGATTTCTGGCTGGTTTAGGTGACTA
rJMSF001L09+ GAATTGTGGGATTATTATGAAACGAGAAATGATCAGATTTCTGGCTGGTTTAGGTGACTA
                      ____________________________________________________________
consensus GAATTGTGGGATTATTATGAAACGAGAAATGATCAGATTTCTGGCTGGTTTAGGTGACTA
 
. : . : . : . : . : . :
rJMSF003H11+ TGAAACACACAGAAAAGCATATTTTAGGAAATTTGACTAATTTGATATTAAAAGTAGTCT
rJMSF001L09+ TGAAACACACAGAAAAGCATATTTTAGGAAATTTGACTAATTTGATATTAAAAGTAGTCT
                      ____________________________________________________________
consensus TGAAACACACAGAAAAGCATATTTTAGGAAATTTGACTAATTTGATATTAAAAGTAGTCT