| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN039D09 | Sequence | 615 | 001262 (3) | ref|XP_009800989.1| | 2e-26 | PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti | |||||
| JMSF001K11 | Sequence | 289 | 000545 (3) | ref|XP_009624222.1| | 3e-16 | PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti | 728 | 001262 (3) | ref|XP_009800989.1| | 3e-19 | PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti |
| JMSF001L11 | Sequence | 388 | 000545 (3) | ref|XP_009800989.1| | 1e-30 | PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti | 725 | 001262 (3) | ref|XP_009800989.1| | 1e-18 | PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti |
This contig is upended
. : . : . : . : . : . :
JMFN039D09- GAAGGTTCACACACCAAGCTATCCCATTTTATCCAT
rJMSF001L11+ ATCCAT
rJMSF001K11+ ATCCAT
____________________________________________________________
consensus GAAGGTTCACACACCAAGCTATCCCATTTTATCCAT
. : . : . : . : . : . :
JMFN039D09- GATGGCTAGCAACATTCTTGGAATTCCCCTGTCGAAAGTTTCGCTCGAGTTTATCTACGA
rJMSF001L11+ GATGGCTAGCAACATTCTTGGAATTCCCCTGTCGAAAGTTTCGCTCGAGTTTATCTACGA
rJMSF001K11+ GATGGCTAGCAACATTCTTGGAATTCCCCTGTCGAAAGTTTCGCTCGAGTTTATCTACGA
____________________________________________________________
consensus GATGGCTAGCAACATTCTTGGAATTCCCCTGTCGAAAGTTTCGCTCGAGTTTATCTACGA
. : . : . : . : . : . :
JMFN039D09- CACTGGAAATAGAGCAGTTGACAGTGCTCGGGGTTCGCTGAGATCCGATACTCTGCAAGC
rJMSF001L11+ CACTGGAAATAGAGCAGTTGACAGTGCTCGGGGTTCGCTGAGATCCGATACTCTGCAAGC
rJMSF001K11+ CACTGGAAATAGAGCAGTTGACAGTGCTCGGGGTTCGCTGAGATCCGATACTCTGCAAGC
____________________________________________________________
consensus CACTGGAAATAGAGCAGTTGACAGTGCTCGGGGTTCGCTGAGATCCGATACTCTGCAAGC
. : . : . : . : . : . :
JMFN039D09- GTTGATGTGTGCCCAGGACTGGATGCGCCCCGAACTTGAAGATTCCAAGGCTTCGTTGAG
rJMSF001L11+ GTTGATGTGTGCCCAGGACTGGATGCGCCCCGAACTTGAAGATTCCAAGGCTTCGTTGAG
rJMSF001K11+ GTTGATGTGTGCCCAGGACTGGATGCGCCCCGAACTTGAAGATTCCAAGGCTTCGTTGAG
____________________________________________________________
consensus GTTGATGTGTGCCCAGGACTGGATGCGCCCCGAACTTGAAGATTCCAAGGCTTCGTTGAG
. : . : . : . : . : . :
JMFN039D09- CTCCACCGCTACTTTGGCCGAACGCTATGATCCAAAATGACTGCAAGATTTTGGTTTGGT
rJMSF001L11+ CTCCACCGCTACTTTGGCCGAACGCTATGATCCAAAATGACTGCAAGATTTTGGTTTGGT
rJMSF001K11+ CTCCACCGCTACTTTGGCCGAACGCTATGATCCAAAATGACTGCAAGATTTTGGTTTGGT
____________________________________________________________
consensus CTCCACCGCTACTTTGGCCGAACGCTATGATCCAAAATGACTGCAAGATTTTGGTTTGGT
. : . : . : . : . : . :
JMFN039D09- GTGCTTTTGCGATTCAAGCATTGCCATTCTTTTGCACACAATCTGAATCTGTACATACTT
rJMSF001L11+ GTGCTTTTGCGATTCAAGCATTGCCATTCTTTTGCACACAATCTGAATCTGTACATACTT
rJMSF001K11+ GTGCTTTTGCGATTCAAGCATTGCCATTCTTTTGCACACAATCTGAATCTGTACATACTT
____________________________________________________________
consensus GTGCTTTTGCGATTCAAGCATTGCCATTCTTTTGCACACAATCTGAATCTGTACATACTT
. : . : . : . : . : . :
JMFN039D09- TTGTCAGGAGGTCTGTTCCTCTTTCATCCTCTTTCCATGCCAAGACTCTAGAATTAGTTT
rJMSF001L11+ TTGTCAGGAGGTCTGTTCCTCTTTCATCCTCTTTCCATGCCAAGACTCTAGAATTAGTTT
rJMSF001K11+ TTGTCAGGAGGTCTGTTCCTCTTTCATCCTCTTTCCATGCCAAGACTCTAGAATTAGTTT
____________________________________________________________
consensus TTGTCAGGAGGTCTGTTCCTCTTTCATCCTCTTTCCATGCCAAGACTCTAGAATTAGTTT
. : . : . : . : . : . :
JMFN039D09- CGTTTTACATTCCCATCTTGTCGAAAAAAGTTGCAGAAATTTTGGAATCTCTATTTTCAT
rJMSF001L11+ CGTTTTACATTCCCATCTTGTCGAAAAAAGTTGCAGAAATTTTGGAATCTCTATTTTCAT
rJMSF001K11+ CGTTTTACATTCCCATCTTGTCGAAAAAAGTTGCAGAAATTTTGGAATCTCTATTTTCAT
____________________________________________________________
consensus CGTTTTACATTCCCATCTTGTCGAAAAAAGTTGCAGAAATTTTGGAATCTCTATTTTCAT
. : . : . : . : . : . :
JMFN039D09- TTATTGTTACCCCTAACTCCTGGTGCAACTGTAAATAGAGCATGGATATTGCTGTGGGCT
rJMSF001L11+ TTATTGTTACCCCTAACTCCTGGTGCAACTGTAAATAGAGCATGGATATTGCTGTGGGCT
rJMSF001K11+ TTATTGTTACCCCTAACTCCTGGTGCAACTGTAAATAGAGCATGGATATTGCTGTGGGCT
____________________________________________________________
consensus TTATTGTTACCCCTAACTCCTGGTGCAACTGTAAATAGAGCATGGATATTGCTGTGGGCT
. : . : . : . : . : . :
JMFN039D09- TGGTTTTGAACATAAGAAAATTTTGGCTATGGTGTTCCATCCATGGCTGATGCCGCTTTT
rJMSF001L11+ TGGTTTTGAACATAAGAAAATTTTGGCTATGGTGTTCCATCCATGGCTGATGCCGCTTTT
rJMSF001K11+ TGGTTTTGAACATAAGAAAATTTTGGCTATGGTGTTCCATCCATGGCTGATGCCGCTTTT
____________________________________________________________
consensus TGGTTTTGAACATAAGAAAATTTTGGCTATGGTGTTCCATCCATGGCTGATGCCGCTTTT
. : . : . : . : . : . :
JMFN039D09- CGGCCCTTTTTGCTCAGCCCACTTTTATTT
rJMSF001L11+ CGGCCCTTTTTGCTCAGCCCACTTTTATTTCAAGATTGCACCTTTTTATGTCCATGGCTG
rJMSF001K11+ CGGCCCTTTTTGCTCAGCCCACTTTTATTTCAAGATTGCACCTTTTTATGTCCATGGCTG
____________________________________________________________
consensus CGGCCCTTTTTGCTCAGCCCACTTTTATTTCAAGATTGCACCTTTTTATGTCCATGGCTG
. : . : . : . : . : . :
rJMSF001L11+ CACAGTTTGCTGCTGAAGTTGCTGATACATTTCAGAGATGAAGGCAAAACCAAACAAAAT
rJMSF001K11+ CACAGTTTGCTGCTGAAGTTGCTGATACATTTCAGAGATGAAGGCAAAACCAAACAAAAT
____________________________________________________________
consensus CACAGTTTGCTGCTGAAGTTGCTGATACATTTCAGAGATGAAGGCAAAACCAAACAAAAT
. : . : . : . : . : . :
rJMSF001L11+ CGCCTCTTATGTACCAAAAAATGGGTAGATCTGTGATTTTCCTAGAC
rJMSF001K11+ CGCCTCTTATGTACCAAAAAATGGGTAGATCTGTGATTTTCCTAGACCATTGATGTGAGT
____________________________________________________________
consensus CGCCTCTTATGTACCAAAAAATGGGTAGATCTGTGATTTTCCTAGACCATTGATGTGAGT