Contig 001258:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS022E06Sequence598001258 (4)ref|XP_009616698.1|4e-35PREDICTED: cyclin-T1-4-like [Nicotiana tomentosiformis] ref|XP_009616699.1| PRED
JMSF001B22Sequence297005045 (4)728001258 (4)emb|CAN74426.1|1e-22hypothetical protein VITISV_010983 [Vitis vinifera]
JMSF037D08Sequence678005045 (4)ref|XP_011086564.1|4e-43PREDICTED: cyclin-T1-3-like [Sesamum indicum]794001258 (4)emb|CAN74426.1|2e-25hypothetical protein VITISV_010983 [Vitis vinifera]
JMSF038K05Sequence703005045 (4)ref|XP_011086564.1|3e-48PREDICTED: cyclin-T1-3-like [Sesamum indicum]928001258 (4)emb|CAN74426.1|2e-66hypothetical protein VITISV_010983 [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038K05+ TTTGGTGATGGTGAGACTAGTG
                      ____________________________________________________________
consensus TTTGGTGATGGTGAGACTAGTG
 
. : . : . : . : . : . :
rJMSF038K05+ ATAAGCATAATCATGAAAGAGAGCCATTGCATTACCAGATCGGTGGGGAAGTACAAAACC
                      ____________________________________________________________
consensus ATAAGCATAATCATGAAAGAGAGCCATTGCATTACCAGATCGGTGGGGAAGTACAAAACC
 
. : . : . : . : . : . :
JMFS022E06- CATGGTGAAGAAGACCGAGAACGAAATGCTGGGAGAA
rJMSF038K05+ GATCAAAGTCTAGTCTTGACAGCCATGGTGAAGAAGACCTGGAAGGGAATGCTGGGAGAA
                      ____________________________________________________________
consensus GATCAAAGTCTAGTCTTGACAGCCATGGTGAAGAAGACCTGGAAGGGAATGCTGGGAGAA
 
. : . : . : . : . : . :
JMFS022E06- CTGAAACAAGGGATAAGGGGGAATTGAAGGACAAGTACTATGGTCGAGCTTTGGAGCGCA
rJMSF038K05+ GTGAAACAAGAGATAAGGCAGAACTGAAGGACAAGTTCCATGGTCGGGCCTTGGAGCACA
                      ____________________________________________________________
consensus GTGAAACAAGGGATAAGGGGGAATTGAAGGACAAGTTCTATGGTCGGGCTTTGGAGCGCA
 
. : . : . : . : . : . :
JMFS022E06- AGGATGGTGCAGTTGGTCAATCACCGCAGGAGGTGATTAAAAAGATTGACAAAGACAAGG
rJMSF038K05+ AGGATGGCATGGTTGGCCAATCACCACAAGAGGTTATCAAGAAGATTGACAAAGACAAGG
                      ____________________________________________________________
consensus AGGATGGTGTGGTTGGTCAATCACCGCAGGAGGTTATTAAGAAGATTGACAAAGACAAGG
 
. : . : . : . : . : . :
JMFS022E06- TCAAAGCAGCACTTGAGAGGAACAGGAAGTCCCGTGGGGATTCAACTAGGAAAGTTGATT
rJMSF038K05+ TCAAAGCAGCACTTGAGAGAAACAGAAAGTCCCGCGGGGATGCACCTAGGAAAGTAGATG
                      ____________________________________________________________
consensus TCAAAGCAGCACTTGAGAGGAACAGGAAGTCCCGTGGGGATTCACCTAGGAAAGTTGATT
 
. : . : . : . : . : . :
JMFS022E06- ACATGGATGAGGATGATCTCATTGAAAGAGAATTGGAGGATGGAATAGAGTTAGCTGCCG
rJMSF038K05+ TATTGGATGATGACGATCTCATTGAAAGAGAATTGGAGGATGGAATAGAGTTAGCTGCTG
                      ____________________________________________________________
consensus TCTTGGATGATGATGATCTCATTGAAAGAGAATTGGAGGATGGAATAGAGTTAGCTGCTG
 
. : . : . : . : . : . :
JMFS022E06- AGAATGAAAAAAACAAACGTGAAAGAAAACAAAGCTGGTCTAAATCTTCAATCAAGTCAG
rJMSF038K05+ AGGCTGAAAAGAACAAGCGGGAAAAAAAACAAAGTTGGTCTAAACCTTCAAACAGGCCAG
                      ____________________________________________________________
consensus AGGCTGAAAAGAACAAGCGTGAAAGAAAACAAAGTTGGTCTAAATCTTCAATCAGGTCAG
 
. : . : . : . : . : . :
JMFS022E06- AGCATGA
rJMSF038K05+ AGCATGACAATGCACATCACATGAAGCATCAAGATGACTCTGGTGATAGACATTACCAAG
rJMSF037D08+ TACCCAG
                      ____________________________________________________________
consensus AGCATGACAATGCACATCACATGAAGCATCAAGATGACTCTGGTGATAGACATTACCCAG
 
. : . : . : . : . : . :
rJMSF038K05+ GAATGAAAGGGCAGTCCTTGCAAAATGATGATTATGAGAATAACGTGGAAGAGGGAGAAT
rJMSF037D08+ GAATGAAAGGGCAGTCC-TGCAAAATGATGATTATGAGAATAACGTGGAAGAGGGAGAAT
rJMSF001B22+ GGGAGAAT
                      ____________________________________________________________
consensus GAATGAAAGGGCAGTCCTTGCAAAATGATGATTATGAGAATAACGTGGAAGAGGGAGAAT
 
. : . : . : . : . : . :
rJMSF038K05+ TCGAACCTTACGATGATGCTGACAGGGGTGGTTACCATTCACCTAAGTCAATCAACCGTA
rJMSF037D08+ TCGNACCTTACGATGATGCTGACAGGGGTGGTTACCATTCACCTAAGTCAATCAACCGTA
rJMSF001B22+ TCGAACCTTACGATGATGCTGACAGGGGTGGTTACCATTCACCTAAGTCAATCAACCGTA
                      ____________________________________________________________
consensus TCGAACCTTACGATGATGCTGACAGGGGTGGTTACCATTCACCTAAGTCAATCAACCGTA
 
. : . : . : . : . : . :
rJMSF038K05+ AGCGAAAGGCAAGTAGCCCTCCTGTGGATGGTAAGCATCGACACGAGTATATGTCAGCAA
rJMSF037D08+ AGCGAAAGGCAAGTAGCCCTCCTGTGGATGGTAAGCATCGACACGAGTATATGTCAGCAA
rJMSF001B22+ AGCGAAAGGCAAGTAGCCCTCCTGTGGATGGTAAGCATCGACACGAGTATATGTCAGCAA
                      ____________________________________________________________
consensus AGCGAAAGGCAAGTAGCCCTCCTGTGGATGGTAAGCATCGACACGAGTATATGTCAGCAA
 
. : . : . : . : . : . :
rJMSF038K05+ GCCACAATCACACATACCATGACTTCCCAGAGGATAGAAATAGGACAGGGAGACTTGGTT
rJMSF037D08+ GCCACAATCACACATACCATGACTTCCCAGAGGATAGAAATAGGACAGGGAGACTTGGTT
rJMSF001B22+ GCCACAATCACACATACCATGACTTCCCAGAGGATAGAAATAGGACAGGGAGACTTGGTT
                      ____________________________________________________________
consensus GCCACAATCACACATACCATGACTTCCCAGAGGATAGAAATAGGACAGGGAGACTTGGTT
 
. : . : . : . : . : . :
rJMSF038K05+ ATTCAGAAAGGGACCACAAAAGGCACGCACAGGAGAATCACGTGTAGAATGCTTTAGAGT
rJMSF037D08+ ATTCAGAAAGGGACCACAAAAGGCACGCACAGGAGAATCACGTGTAGAATGCTTTAGAGT
rJMSF001B22+ ATTCAGAAAGGGACCACAAAAGGCACGCACAGGAGAATCACGTGTAGAATGCTTTAGAGT
                      ____________________________________________________________
consensus ATTCAGAAAGGGACCACAAAAGGCACGCACAGGAGAATCACGTGTAGAATGCTTTAGAGT
 
. : . : . : . : . : . :
rJMSF038K05+ GTAATAGCAGCACCATGTCTTAGTTATGAACATTATACAAGGTCGGTGAAGCAGAGTTTT
rJMSF037D08+ GTAATAGCAGCACCATGTCTTAGTTATGAACATTATACAAGGTCGGTGAAGCAGAGTTTT
rJMSF001B22+ GTAATAGCAGCACCATGTCTTAGTTATGAACATTATACAAGGTCGGTGAAGCAGAGTTTT
                      ____________________________________________________________
consensus GTAATAGCAGCACCATGTCTTAGTTATGAACATTATACAAGGTCGGTGAAGCAGAGTTTT
 
. : . : . : . : . : . :
rJMSF038K05+ CAAGGTTAGTACAGTTGTGATCTCCGCCTGTGGTTTGGTTTATCTTGCTAAACAATTTTG
rJMSF037D08+ CAAGGTTAGTACAGTTGTGATCTCCGCCTGTGGTTTGGTTTATCTTGCTAAACAATTTTG
rJMSF001B22+ CAAGGTTAGTACAGTTGTGATCTCCGCCTGTGGTTTGGTTTATCTTGCTAAACAATTTTG
                      ____________________________________________________________
consensus CAAGGTTAGTACAGTTGTGATCTCCGCCTGTGGTTTGGTTTATCTTGCTAAACAATTTTG
 
. : . : . : . : . : . :
rJMSF038K05+ GACAGC
rJMSF037D08+ GACAGCATAAATCTTGAATTGGTCATGGTTCTGAAATTCCTACAGATTTGGGTGGTGAAA
rJMSF001B22+ GACAGCATAAATCTTGAATTGGTCATGGTTCTGAAATTCCTACAGATTTGGGTGGTGAAA
                      ____________________________________________________________
consensus GACAGCATAAATCTTGAATTGGTCATGGTTCTGAAATTCCTACAGATTTGGGTGGTGAAA
 
. : . : . : . : . : . :
rJMSF037D08+ CACAGCTTTATTGGGTAGGACTGTAGGATTGTGATGGAAGTCCATGCTTTGAGGTGCTAA
rJMSF001B22+ CACAGCTTTATTGGGTAGGACTGTAGGATTGTGATGGAAGTCCATGCTTTGAGGTGCTAA
                      ____________________________________________________________
consensus CACAGCTTTATTGGGTAGGACTGTAGGATTGTGATGGAAGTCCATGCTTTGAGGTGCTAA
 
. : . : . : . : . : . :
rJMSF037D08+ ATTTTTTTTGGGTCAGCTTAAATCTTCAATTGATTAGATAATATCTATTTATAGAATCAA
rJMSF001B22+ ATTTTTTTTGGGTCAGCTTAAATCTTCAATTGATTAGATAATATCTATTTATAGAATCAA
                      ____________________________________________________________
consensus ATTTTTTTTGGGTCAGCTTAAATCTTCAATTGATTAGATAATATCTATTTATAGAATCAA
 
. : . : . : . : . : . :
rJMSF037D08+ AATTCAAAATGTGTAACATTATTTTTCCTTAGGGCGTGGGGACGGACTATACACGCTCCC
rJMSF001B22+ AATTCAAAATGTGTAACATTATTTTTCCTTAGGGCGTGGGGACGGACTATACACGCTCCC
                      ____________________________________________________________
consensus AATTCAAAATGTGTAACATTATTTTTCCTTAGGGCGTGGGGACGGACTATACACGCTCCC
 
. : . : . : . : . : . :
rJMSF037D08+ CGTCTCCCCTCCCACACATTTTCCTGCTTCCCATCATACATGTTAAGAGTCCCAGGATCG
rJMSF001B22+ CGTCTCCCCTCCCACACATTTTCCTGCTTCCCATCATACATGTTAAGAGTCCCAGGATCG
                      ____________________________________________________________
consensus CGTCTCCCCTCCCACACATTTTCCTGCTTCCCATCATACATGTTAAGAGTCCCAGGATCG
 
. : . : . : . : . : . :
rJMSF037D08+ GTTGTATTTTATGGTAGTTGTATAAGTTATCCCCATGGGCTTAAATAACCATTGGGCACA
rJMSF001B22+ GTTGTATTTTATGGTAGTTGTATAAGTTATCCCCATGGGCTTAAATAACCATTGGGCACA
                      ____________________________________________________________
consensus GTTGTATTTTATGGTAGTTGTATAAGTTATCCCCATGGGCTTAAATAACCATTGGGCACA