Contig 001257:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+                                                      GGGGAAATTAACAGAA
                      ____________________________________________________________
consensus                                                         GGGGAAATTAACAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          CTAGTTGAGCTTGACCCGGACTTCATTCCAGATTTAGCAGAGGGGGAGTTACGGGATGAT
                      ____________________________________________________________
consensus             CTAGTTGAGCTTGACCCGGACTTCATTCCAGATTTAGCAGAGGGGGAGTTACGGGATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          GATGTCTTTGATAGAACGGAACCCCTAAATTATGCAGATCGGGATGAAAGTACCAACCCC
                      ____________________________________________________________
consensus             GATGTCTTTGATAGAACGGAACCCCTAAATTATGCAGATCGGGATGAAAGTACCAACCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          ACTCCTTACTCTGCTAACTACAGTGTCTCACCTAGAGAACTAAGTTTGCGGCTATACGAG
rJMSF001B10+                                                           GGCTATACGAG
                      ____________________________________________________________
consensus             ACTCCTTACTCTGCTAACTACAGTGTCTCACCTAGAGAACTAAGTTTGCGGCTATACGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          GTCATTAATTCACAGCTGGAAGAACGCAACAGGGAGCTCGAGACAGAAGTTGAAAATCTC
rJMSF001B10+          GTCATTAATTCACAGCTGGAAGAACGCAACAGGGAGCTCGAGACAGAAGTTGAAAATCTC
                      ____________________________________________________________
consensus             GTCATTAATTCACAGCTGGAAGAACGCAACAGGGAGCTCGAGACAGAAGTTGAAAATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          CAGAGGAAGGCTCGCTACATGGAAGTAGTGCTCACTAATTCTTGCCGAGAATTCTCTAAC
rJMSF001B10+          CAGAGGAAGGCTCGCTACATGGAAGTAGTGCTCACTAATTCTTGCCGAGAATTCTCTAAC
                      ____________________________________________________________
consensus             CAGAGGAAGGCTCGCTACATGGAAGTAGTGCTCACTAATTCTTGCCGAGAATTCTCTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          AGCGAGGCAGGGTCTTCTTCTGCTCAAGGGAGTCCGGTCACTAGAGATGAAGTCGACTGT
rJMSF001B10+          AGCGAGGCAGGGTCTTCTTCTGCTCAAGGGAGTCCGGTCACTAGAGATGAAGTCGACTGT
                      ____________________________________________________________
consensus             AGCGAGGCAGGGTCTTCTTCTGCTCAAGGGAGTCCGGTCACTAGAGATGAAGTCGACTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          GTGGTCATGAATTTAGCGGGAGAGGCTCTTGATGCATACAATGACGGTTATGATGAACTC
rJMSF001B10+          GTGGTCATGAATTTAGCGGGAGAGGCTCTTGATGCATACAATGACGGTTATGATGAACTC
                      ____________________________________________________________
consensus             GTGGTCATGAATTTAGCGGGAGAGGCTCTTGATGCATACAATGACGGTTATGATGAACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          TCGAAAATAATTGAGTCAGAAGAAGACGAGATGGCATCAGGGGCCGGGAAGATCCAACGT
rJMSF001B10+          TCGAAAATAATTGAGTCAGAAGAAGACGAGATGGCATCAGGGGCCGGGAAGATCCAACGT
                      ____________________________________________________________
consensus             TCGAAAATAATTGAGTCAGAAGAAGACGAGATGGCATCAGGGGCCGGGAAGATCCAACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          CAGGAACTTGTGCAGCCTCTCAGGAACTTGTGCAGCCTCGTGATCATGATCTATATCAGT
rJMSF001B10+          CAGGAACTTGTGCAGCCTCTCAGGAACTTGTGCAGCCTCGTGATCATGATCTATATCAGT
                      ____________________________________________________________
consensus             CAGGAACTTGTGCAGCCTCTCAGGAACTTGTGCAGCCTCGTGATCATGATCTATATCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          TTCATAATGGTACGCTGATTGATGAGAACGAGGATCGCGATGAAGTGGAAAAGCTTTTGA
rJMSF001B10+          TTCATAATGGTACGCTGATTGATGAGAACGAGGATCGCGATGAAGTGGAAAAGCTTTTGA
                      ____________________________________________________________
consensus             TTCATAATGGTACGCTGATTGATGAGAACGAGGATCGCGATGAAGTGGAAAAGCTTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          TAGAGCAGATTGTTGAGAAAGTTAGGAAAGGCAATCCTGCAGTTTTTAGTGCTCAGAAAG
rJMSF001B10+          TAGAGCAGATTGTTGAGAAAGTTAGGAAAGGCAATCCTGCAGTTTTTAGTGCTCAGAGAG
                      ____________________________________________________________
consensus             TAGAGCAGATTGTTGAGAAAGTTAGGAAAGGCAATCCTGCAGTTTTTAGTGCTCAGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031P01+          CATTGTTTTACC                                                
rJMSF001B10+          CATTGTTTTACCTTGATGAACAATGAACATTGACATTAGCTAAACCAGAAAATGAACACA
                      ____________________________________________________________
consensus             CATTGTTTTACCTTGATGAACAATGAACATTGACATTAGCTAAACCAGAAAATGAACACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001B10+          GAAAAGAAAAAGGTATAGAAGTTTAACTTGTCATACTGAGTCTTTCTATTGCGGTTTCCA
                      ____________________________________________________________
consensus             GAAAAGAAAAAGGTATAGAAGTTTAACTTGTCATACTGAGTCTTTCTATTGCGGTTTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001B10+          TCTCTTGCGCGGTTTTTTGTCCCGTGCACAACTTCGAGTAGTGGTTGCGAGTTTTCTTTC
                      ____________________________________________________________
consensus             TCTCTTGCGCGGTTTTTTGTCCCGTGCACAACTTCGAGTAGTGGTTGCGAGTTTTCTTTC