| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF051K22 | Sequence | 585 | 006481 (16) | ref|NP_001275381.1| | 3e-97 | epoxide hydrolase [Solanum tuberosum] gb|AAA81890.1| epoxide hydrolase [Solanum | 546 | 001253 (3) | ref|NP_001274907.1| | 3e-54 | epoxide hydrolase [Solanum tuberosum] gb|AAA81891.1| epoxide hydrolase [Solanum |
| JMSF018L11 | Sequence | 504 | 006481 (16) | emb|CDP10752.1| | 5e-79 | unnamed protein product [Coffea canephora] | 780 | 001253 (3) | ref|NP_001274907.1| | 3e-114 | epoxide hydrolase [Solanum tuberosum] gb|AAA81891.1| epoxide hydrolase [Solanum |
| JMSF020D10 | Sequence | 681 | 010593 (3) | ref|XP_009597420.1| | 5e-98 | PREDICTED: psbQ-like protein 2, chloroplastic [Nicotiana tomentosiformis] | 769 | 001253 (3) | ref|NP_001274907.1| | 9e-107 | epoxide hydrolase [Solanum tuberosum] gb|AAA81891.1| epoxide hydrolase [Solanum |
This contig is upended
. : . : . : . : . : . :
rJMSF018L11+ CAGTCCATCGCTCCTGAAGAAGACAAAGTGTTCGTTGTGGGTCATGACT
rJMSF020D10+ TGTGGGTCATGACT
____________________________________________________________
consensus CAGTCCATCGCTCCTGAAGAAGACAAAGTGTTCGTTGTGGGTCATGACT
. : . : . : . : . : . :
rJMSF018L11+ GGGGTGCACTCATAGCTTGGCAATTGTGCATGTTTAGGCCGGATAAAGTGAAGGCTTTGG
rJMSF020D10+ GGGGCGCAATCATAGCTTGGCATTTGTGTATGTTTAGGCCGGATAAAGTGAAGGCTTTGG
____________________________________________________________
consensus GGGGTGCACTCATAGCTTGGCATTTGTGTATGTTTAGGCCGGATAAAGTGAAGGCTTTGG
. : . : . : . : . : . :
rJMSF018L11+ TCAACCTCAGTGTCCAGTTTTTCCCTAGGCGTCCTCATCTGGATCTCGTTGAAAGCTTTA
rJMSF020D10+ TCAACCTCAGTGTCCATTTTTTCCCTAGGCATCCTCATCTGGATCTTGTTGAAGGCCATA
____________________________________________________________
consensus TCAACCTCAGTGTCCATTTTTTCCCTAGGCGTCCTCATCTGGATCTTGTTGAAGGCTTTA
. : . : . : . : . : . :
rJMSF018L11+ AGGCCATGTATGGAAATGATCACTACATTTGCAGATTCCAGGAACCAGGAGAGATTGAAG
rJMSF020D10+ GGGCCATGTATGGAAATGATCACTACATTTGCAGATTCCAGGAACCAGGAGAGATTGAAG
____________________________________________________________
consensus GGGCCATGTATGGAAATGATCACTACATTTGCAGATTCCAGGAACCAGGAGAGATTGAAG
. : . : . : . : . : . :
rJMSF018L11+ CCGAGTTAGCCCCTATTGGAATCAAAACATGTCTCCAAAA---CATCTTTGCATTCCGCA
rJMSF020D10+ CCGAGTTTGCCCCTATTGGAGTCAAAACATGTCTCCAAAACATCATCTTTGCATTCGGTA
____________________________________________________________
consensus CCGAGTTTGCCCCTATTGGAGTCAAAACATGTCTCCAAAACATCATCTTTGCATTCGGTA
. : . : . : . : . : . :
rJMSF018L11+ GACCAGGACCTTTGTATTTTCCTAAAGGCAAAGGTTTTAGTGCAAATACAGATGGTTCAA
rJMSF020D10+ GACCAGAACCTTTGTATTTTCCTAAAGATAAAGGCTT---------TACAGATGGTTCAA
____________________________________________________________
consensus GACCAGGACCTTTGTATTTTCCTAAAGGTAAAGGTTTTAGTGCAAATACAGATGGTTCAA
. : . : . : . : . : . :
rJMSF018L11+ CGGCCCTGCCGGCATGGTTGCCGGAGGAAGACTTGGATTATTTCGTCAGCCGGTATGAGA
rJMSF020D10+ CTGCCCTGCCGGCATGGTTGCCGGAGGAAGACTTGGATTATTATGTGAACCGGTATGAGA
rJMFF051K22+ TGGTTGCCGGAGAAAGACTTGGATTATTTTGTCAGCCGGTTTGAGA
____________________________________________________________
consensus CTGCCCTGCCGGCATGGTTGCCGGAGGAAGACTTGGATTATTTTGTCAGCCGGTATGAGA
. : . : . : . : . : . :
rJMSF018L11+ AGACAGGCTTCACCGGAGGAGTGAACTACTACCGAGCTTTGAAACTAGACTGGGAGCTAA
rJMSF020D10+ AGACAGGCTTCACCGGAGGAGTTAACTACTACCGAGCTTTGAAACTAGACTGGGAGTTAA
rJMFF051K22+ AGACAGGCTTCACCGGAGGAGTTAACTACTACCGAGCTGCGAATTTGAACTGGGAGCTGA
____________________________________________________________
consensus AGACAGGCTTCACCGGAGGAGTTAACTACTACCGAGCTTTGAAACTAGACTGGGAGCTAA
. : . : . : . : . : . :
rJMSF018L11+ CTGCAGCCTGGTCTGAGACAAAAGTGATGGTGCCAACCAAATTCATAGTTGGAGACCTAG
rJMSF020D10+ CTGCACCCTGGTCTGGGTCAAAAGTGATGGTGCCAACCAAATTCATAGTTGGAGACCTAG
rJMFF051K22+ CTGCACCCTGGACTGAGGCAAAAGTGATGGTGCCAACCAAATTCATAGTTGGAGAGCTGG
____________________________________________________________
consensus CTGCACCCTGGTCTGAGTCAAAAGTGATGGTGCCAACCAAATTCATAGTTGGAGACCTAG
. : . : . : . : . : . :
rJMSF018L11+ ACTTAGTTTACCATATTCCAGGTGCAAAAGAATACATACACAATGGAGGGTTGAAGAATG
rJMSF020D10+ ACTTAGTTTATCAAATTCCAGGCGCAAAAGAATACATACACAATGGAGGGTTGAAGAATG
rJMFF051K22+ ACTTAGTTTACCATATTCCAGGTGCAAAAGAATACATACACAATGGAGGGTTGAAGAATG
____________________________________________________________
consensus ACTTAGTTTACCATATTCCAGGTGCAAAAGAATACATACACAATGGAGGGTTGAAGAATG
. : . : . : . : . : . :
rJMSF018L11+ ATGTGCCACTGCTTGAAGATGTGGTGGTACTCCAAGGTGTGGCTCATTTCCTTAACCAAG
rJMSF020D10+ ATGTGCCATTACTGGAAGATGTGGTGGTACTCCAAGGTGTGGCTCATTTTCTCAACCAAG
rJMFF051K22+ ATGTGCCATTGCTGGAAGATGTGGTGGTTCTCAAAGGTGTGGCTCATTTCATCAATCAAG
____________________________________________________________
consensus ATGTGCCATTGCTGGAAGATGTGGTGGTACTCCAAGGTGTGGCTCATTTCCTCAACCAAG
. : . : . : . : . : . :
rJMSF018L11+ AAGCACCTGAAGAGGTTAACAACCA
rJMSF020D10+ AAGCACCTCAAGAGGTTAACAACCA
rJMFF051K22+ AAGCGCCAGAAGAGGTTAACAACCATATCTTCCACTTTCTCAAGAAGTTCGTCTAAACTT
____________________________________________________________
consensus AAGCACCTGAAGAGGTTAACAACCATATCTTCCACTTTCTCAAGAAGTTCGTCTAAACTT
. : . : . : . : . : . :
rJMFF051K22+ CCTTGTGAGGTTGGATTGTGTTTAGGATGAATAACAACCTTAATAGTGAAGCCAAGCGTT
____________________________________________________________
consensus CCTTGTGAGGTTGGATTGTGTTTAGGATGAATAACAACCTTAATAGTGAAGCCAAGCGTT
. : . : . : . : . : . :
rJMFF051K22+ GCACTTTTAAGTTCTAAAAAACTGTATGTGTTTCTGAAAGTCTAAATGGAACAGGACTGG
____________________________________________________________
consensus GCACTTTTAAGTTCTAAAAAACTGTATGTGTTTCTGAAAGTCTAAATGGAACAGGACTGG
. : . : . : . : . : . :
rJMFF051K22+ ATTTGATGATCTATATATGAAGTTTCTGATTXXXXXXXXXXXXXXXXXXCTCTCCAGGGT
____________________________________________________________
consensus ATTTGATGATCTATATATGAAGTTTCTGATTNNNNNNNNNNNNNNNNNNCTCTCCAGGGT