| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034C14 | Sequence | 595 | 001249 (7) | ref|XP_009803257.1| | 3e-19 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1 [Nicot | |||||
| JMFF036O10 | Sequence | 510 | 011538 (48) | gb|KJB11482.1| | 2e-80 | hypothetical protein B456_001G261400 [Gossypium raimondii] | 651 | 001249 (7) | ref|XP_009803257.1| | 2e-36 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1 [Nicot |
| JMFF037G07 | Sequence | 680 | 001249 (7) | ref|XP_009803257.1| | 1e-43 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1 [Nicot | |||||
| JMFF051D20 | Sequence | 569 | 011538 (48) | gb|KJB11482.1| | 7e-97 | hypothetical protein B456_001G261400 [Gossypium raimondii] | 559 | 001249 (7) | ref|XP_009803257.1| | 6e-18 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1 [Nicot |
| JMFN010O17 | Sequence | 557 | 001249 (7) | ref|XP_009803257.1| | 2e-19 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1 [Nicot | |||||
| JMSF019K13 | Sequence | 263 | 010667 (2) | 743 | 001249 (7) | ref|XP_009803258.1| | 3e-50 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2 [Nicot | |||
| JMSF052J13 | Sequence | 500 | 010667 (2) | 459 | 001249 (7) | ref|XP_009803257.1| | 3e-07 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1 [Nicot | |||
This contig is upended
. : . : . : . : . : . :
rJMSF019K13+ CAAGCATCAGAGAAGA
____________________________________________________________
consensus CAAGCATCAGAGAAGA
. : . : . : . : . : . :
rJMSF019K13+ GCCTCCCTACACCTCCAGCATTTGCTATGAGCAATTCTGGAACGGAAAAGTTCAATCCAC
____________________________________________________________
consensus GCCTCCCTACACCTCCAGCATTTGCTATGAGCAATTCTGGAACGGAAAAGTTCAATCCAC
. : . : . : . : . : . :
rJMSF019K13+ GACATTCTCTGCCTCTGCTGGGTGAAGATTATCCTGAACGACCTGGTCAACCTGAATGCA
rJMFF037G07+ TGAAGATTATCCTGAACGACCTGGTCAACCTGAATGCA
rJMFF036O10+ TGAATGCA
____________________________________________________________
consensus GACATTCTCTGCCTCTGCTGGGTGAAGATTATCCTGAACGACCTGGTCAACCTGAATGCA
. : . : . : . : . : . :
rJMSF019K13+ GTTACTTCATTAAAACTGGTGACTGTAAATATAAATCTAATTGCAAGTTTCATCATCCAA
rJMFF034C14+ GCAAGTTTCATCATCCAA
rJMFF037G07+ GTTACTTCATTAAAACTGGTGACTGTAAATATAAATCTAATTGCAAGTTTCATCATCCAA
rJMFF036O10+ GTTACTTCATTAAAACTGGTGACTGTAAATATAAATCTAATTGCAAGTTTCATCATCCAA
____________________________________________________________
consensus GTTACTTCATTAAAACTGGTGACTGTAAATATAAATCTAATTGCAAGTTTCATCATCCAA
. : . : . : . : . : . :
rJMSF019K13+ AGACTCAATTGA-CGAGGACCCAAACACTTC-TTAATGACAAGGGCCTGCCTCTAAGACC
rJMFF034C14+ AGACTCAATTGAGNGAGGACCCAAACACTTCNTTAATGACAAGGGCCTGCCTNTAAGACC
rJMFF037G07+ AGACTCAATTGA-CGAGGACCCAAACACTTC-TTAATGACAAGGGCCTGCCTCTAAGACC
rJMFF036O10+ AGACTCAATTGA-CGAGGACCCAAACACTTC-TTAATGACAAGGGCCTGCCTCTAAGACC
JMFN010O17- TGACAAGGGCCTGCCTCTAAGACC
rJMFF051D20+ AGGGCCTGCCTCTAAGACC
____________________________________________________________
consensus AGACTCAATTGA-CGAGGACCCAAACACTTC-TTAATGACAAGGGCCTGCCTCTAAGACC
. : . : . : . : . : . :
rJMSF019K13+ TGATCAAGCCATCTGCTCGTATTACAGCCGATATGGCATTTGCAAGTTTGGACCAAACTG
rJMFF034C14+ TGATCAAGCCATCTGCTCGTATTACAGCCGATATGGCATTTGCAAGTTTGGACCAAACTG
rJMFF037G07+ TGATCAAGCCATCTGCTCGTATTACAGCCGATATGGCATTTGCAAGTTTGGACCAAACTG
rJMFF036O10+ TGATCAAGCCATCTGCTCGTATTACAGCCGATATGGCATTTGCAAGTTTGGACCAAACTG
rJMSF052J13+ TATGGCATTTGCAAGTTTGGACCAAACTG
JMFN010O17- TGATCAAGCCATCTGCTCGTATTACAGCCGATATGGCATTTGCAAGTTTGGACCAAACTG
rJMFF051D20+ TGATCAAGCCATCTGCTCGTATTACAGCCGATATGGCATTTGCAAGTTTGGACCAAACTG
____________________________________________________________
consensus TGATCAAGCCATCTGCTCGTATTACAGCCGATATGGCATTTGCAAGTTTGGACCAAACTG
. : . : . : . : . : . :
rJMSF019K13+ TAAATTCGACCATCCAGATAATTACAGCCATTCCCCATCTTCTGGTTGGTCGGAATTTGA
rJMFF034C14+ TAAATTCGACCATCCAGATAATTACAGCCATTCCCCATCTTCTGGTTGGTCGGAATTTGA
rJMFF037G07+ TAAATTCGACCATCCAGATAATTACAGCCATTCCCCATCTTCTGGTTGGTCGGAATTTGA
rJMFF036O10+ TAAATTCGACCATCCAGATAATTACAGCCATTCCCCATCTTCTGGTTGGTCGGAATTTGA
rJMSF052J13+ TAAATTCGACCATCCAGATAATTACAGCCATTCCCCATCTTCTGGTTGGTCGGAATTTGA
JMFN010O17- TAAATTCGACCATCCAGATAATTACAGCCATTCCCCATCTTCTGGTTGGTCGGAATTTGA
rJMFF051D20+ TAAATTCGACCATCCAGATAATTACAGCCATTCCCCATCTTCTGGTTGGTCGGAATTTGA
____________________________________________________________
consensus TAAATTCGACCATCCAGATAATTACAGCCATTCCCCATCTTCTGGTTGGTCGGAATTTGA
. : . : . : . : . : . :
rJMSF019K13+ TCAGCCTCCCTTCGGTAACCCAGACAGCACAAACGGGGCTAGGGTGGTGAGGAAAGGAAG
rJMFF034C14+ TCAGCCTCCCTTCGGTAACCCAGACAGCACAAACGGGGCTAGGGTGGTGAGGAAAGGAAG
rJMFF037G07+ TCAGCCTCCCTTCGGTAACCCAGACAGCACAAACGGGGCTAGGGTGGTGAGGAAAGGAAG
rJMFF036O10+ TCAGCCTCCCTTCGGTAACCCAGACAGCACAAACGGGGCTAGGGTGGTGAGGAAAGGAAG
rJMSF052J13+ TCAGCCTCCCTTCGGTAACCCAGACANCACAANCGGGGNTAGGGTGGTGAGGAAAGGAAG
JMFN010O17- TCAGCCTCCCTTCGGTAACCCAGACAGCACAAACGGGGCTAGGGTGGTGAGGAAAGGAAG
rJMFF051D20+ TCAGCCTCCCTTCGGTAACCCAGACAGCACAAACGGGGCTAGGGTGGTGAGGAAAGGAAG
____________________________________________________________
consensus TCAGCCTCCCTTCGGTAACCCAGACAGCACAAACGGGGCTAGGGTGGTGAGGAAAGGAAG
. : . : . : . : . : . :
rJMSF019K13+ CGGGAGCGGATCTTTAGTACAACAGTCCGTCTAAAGTCGATTCAGAGTACTAGGCCGGGT
rJMFF034C14+ CGGGAGCGGATCTTTAGTACAACAGTCCGTCTAAAGTCGATTCAGAGTACTAGGCCGGGT
rJMFF037G07+ CGGGAGCGGATCTTTAGTACAACAGTCCGTCTAAAGTCGATTCAGAGTACTAGGCCGGGT
rJMFF036O10+ CGGGAGCGGATCTTTAGTACAACAGTCCGTCTAAAGTCGATTCAGAGTACTAGGCCGGGT
rJMSF052J13+ CGGGAGCGGATCTTTAGTACAACAGTCCGTCTAAAGTCGATTCAGAGTANTAGGCCGGGT
JMFN010O17- CGGGAGCGGATCTTTAGTACAACAGTCCGTCTAAAGTCGATTCAGAGTACTAGGCCGGGT
rJMFF051D20+ CGGGAGCGGATCTTTAGTACAACAGTCCGTCTAAAGTCGATTCAGAGTACTAGGCCGGGT
____________________________________________________________
consensus CGGGAGCGGATCTTTAGTACAACAGTCCGTCTAAAGTCGATTCAGAGTACTAGGCCGGGT
. : . : . : . : . : . :
rJMSF019K13+ TTATTGTTTAAACCATCAAAAGCTAAAGGTTGGGCCGGTGAAATTCTGTTTATTATGCTT
rJMFF034C14+ TTATTGTTTAAACCATCAAAAGCTAAAGGTTGGGCCGGTGAAATTCTGTTTATTATGCTT
rJMFF037G07+ TTATTGTTTAAACCATCAAAAGCTAAAGGTTGGGCCGGTGAAATTCTGTTTATTATGCTT
rJMFF036O10+ TTATTGTTTAAACCATCAAAAGCTAAAGGTTGGGCCGGTGAAATTCTGTTTATTATGCTT
rJMSF052J13+ TTATTGTTTAANCCATCNAAAGNTAAAGGTTGGGCCGGTGAAATTCTGTTTATTATGCTT
JMFN010O17- TTATTGTTTAAACCATCAAAAGCTAAAGGTTGGGCCGGTGAAATTCTGTTTATTATGCTT
rJMFF051D20+ TTATTGTTTAAACCATCAAAAGCTAAAGGTTGGGCCGGTGAAATTCTGTTTATTATGCTT
____________________________________________________________
consensus TTATTGTTTAAACCATCAAAAGCTAAAGGTTGGGCCGGTGAAATTCTGTTTATTATGCTT
. : . : . : . : . : . :
rJMSF019K13+ AGCAGCTGTCAGGTATAGAGGAGGTTTGCAGTAATTTTATAATGTTGCATCTTTGAAAAA
rJMFF034C14+ AGCAGCTGTCAGGTATAGAGGAGGTTTGCAGTAATTTTATAATGTTGCATCTTTGAAAAA
rJMFF037G07+ AGCAGCTGTCAGGTATAGAGGAGGTTTGCAGTAATTTTATAATGTTGCATCTTTGAAAAA
rJMFF036O10+ AGCAGCTGTCAGGTATAGAGGAGGTTTGCAGTAATTTTATAATGTTGCATCTTTGAAAAA
rJMSF052J13+ NGCAGCTGTCAGGTATAGAGGAGGTTTGCAGTAATTTTATAANGTTGCATCTTTGAAAAA
JMFN010O17- AGCAGCTGTCAGGTATAGAGGAGGTTTGCAGTAATTTTATAATGTTGCATCTTTGAAAAA
rJMFF051D20+ AGCAGCTGTCAGGTATAGAGGAGGTTTGCAGTAATTTTATAATGTTGCATCTTTGAAAAA
____________________________________________________________
consensus AGCAGCTGTCAGGTATAGAGGAGGTTTGCAGTAATTTTATAATGTTGCATCTTTGAAAAA
. : . : . : . : . : . :
rJMSF019K13+ GTGCAAGCGAAATAGGATTTTTGTAAATTAAGAATACACACAGCATGCAATGCTTGTCTT
rJMFF034C14+ GTGCAAGCGAAATAGGATTTTTGTAAATTAAGAATACACACAGCATGCAATGCTTGTCTT
rJMFF037G07+ GTGCAAGCGAAATAGGATTTTTGTAAATTAAGAATACACACAGCATGCAATGCTTGTCTT
rJMFF036O10+ GTGCAAGCGAAATAGGATTTTTGTAAATTAAGAATACACACAGCATGCAATGCTTGTCTT
rJMSF052J13+ GTGCAAGCGAAATAGGATTTTTGTAAATNAAGAATACACACAGCANGCAATGCTTGTCTT
JMFN010O17- GTGCAAGCGAAATAGGATTTTTGTAAATTAAGAATACACACAGCATGCAATGCTTGTCTT
rJMFF051D20+ GTGCAAGCGAAATAGGATTTTTGTAAATTAAGAATACACACAGCATGCAATGCTTGTCTT
____________________________________________________________
consensus GTGCAAGCGAAATAGGATTTTTGTAAATTAAGAATACACACAGCATGCAATGCTTGTCTT
. : . : . : . : . : . :
rJMSF019K13+ GGAAGATACAAACACTTTGCTGTTGCCTTGTTTCCTTTCCATTGTATTGTTATTTATTAT
rJMFF034C14+ GGAAGATACAAACACTTTGCTGTTGCCTTGTTTCCTTTCCATTGTATTGTTATTTATTAT
rJMFF037G07+ GGAAGATACAAACACTTTGCTGTTGCCTTGTTTCCTTTCCATTGTATTGTTATTTATTAT
rJMFF036O10+ GGAAGATACAAACACTTTGCTGTTGCCTTGTTTCCTTTCCATTGTATTGTTATTTATTAT
rJMSF052J13+ GGAAGATACAAACACTTCGCTGTTGCCTTGTTTCCTTTCCATTGTCTNGCTATTTATTAT
JMFN010O17- GGAAGATACAAACACTTTGCTGTTGCCTTGTTTCCTTTCCATTGTATTGTTATTTATTAT
rJMFF051D20+ GGAAGATACAAACACTTTGCTGTTGCCTTGTTTCCTTTCCATTGTATTGTTATTTATTAT
____________________________________________________________
consensus GGAAGATACAAACACTTTGCTGTTGCCTTGTTTCCTTTCCATTGTATTGTTATTTATTAT
. : . : . : . : . : . :
rJMSF019K13+ GGATTATGG
rJMFF034C14+ GGATTATGGATTTAGGTTATGGTTTATACTATAACAA
rJMFF037G07+ GGATTATGGATTTAGGTTATGGTTTATACTATAACAATAACCAA
rJMFF036O10+ GGATTATGGATTTAGGTTATGGTTTATACTATAACAATAACCAA
rJMSF052J13+ GGATTAT
JMFN010O17- GGATTATGGATTTAGGTTATGGTTTATACTATAACAATAACCAATATTTGAAT
rJMFF051D20+ GGATTATGGATTTAGGTTATGGTTTATACTATAACAATAACCAATATTTGAATATTTCCT
____________________________________________________________
consensus GGATTATGGATTTAGGTTATGGTTTATACTATAACAATAACCAATATTTGAATATTTCCT