| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF043B18 | Sequence | 628 | 010681 (8) | ref|XP_002270988.3| | 2e-66 | PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Vitis vinifera] | 530 | 001248 (8) | gb|EYU43185.1| | 4e-72 | hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata] |
| JMFF051C18 | Sequence | 555 | 010681 (8) | ref|XP_009795256.1| | 5e-48 | PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris] | 614 | 001248 (8) | gb|EYU43185.1| | 1e-71 | hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata] |
| JMFF051I16 | Sequence | 554 | 010681 (8) | ref|XP_009795256.1| | 3e-49 | PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris] | 532 | 001248 (8) | gb|KDO58457.1| | 3e-56 | hypothetical protein CISIN_1g0468081mg, partial [Citrus sinensis] |
| JMFF051K16 | Sequence | 555 | 010681 (8) | ref|XP_009795256.1| | 1e-49 | PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris] | 493 | 001248 (8) | gb|KDO58457.1| | 9e-54 | hypothetical protein CISIN_1g0468081mg, partial [Citrus sinensis] |
| JMSF002L24 | Sequence | 391 | 010681 (8) | ref|XP_010112806.1| | 3e-12 | Threonine--tRNA ligase [Morus notabilis] gb|EXC34921.1| Threonine--tRNA ligase [ | 748 | 001248 (8) | gb|EYU43185.1| | 1e-141 | hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata] |
| JMSF009C07 | Sequence | 285 | 010681 (8) | 717 | 001248 (8) | ref|XP_009795256.1| | 3e-126 | PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris] | |||
| JMSF021J21 | Sequence | 627 | 010681 (8) | emb|CAN65674.1| | 2e-63 | hypothetical protein VITISV_002009 [Vitis vinifera] | 764 | 001248 (8) | gb|EYU43185.1| | 2e-137 | hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata] |
| JMSF021P20 | Sequence | 664 | 010681 (8) | ref|XP_002270988.3| | 1e-75 | PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Vitis vinifera] | 720 | 001248 (8) | gb|KDO58457.1| | 2e-127 | hypothetical protein CISIN_1g0468081mg, partial [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMSF009C07+ TAC
rJMSF002L24+ TTAC
____________________________________________________________
consensus TTAC
. : . : . : . : . : . :
rJMSF009C07+ AGAGGGAATTTTGCAACAATTTGGTTTTGATAATTATGAGGTCAACCTTTCAACAAGGCC
rJMSF002L24+ AGAGGGAATTTTGCAACAATTTGGTTTTGATAATTATGAGGTCAACCTTTCAACAAGGCC
rJMSF021P20+ GGCC
rJMSF021J21+ TTGGTTTTGATAATTATGAGGTCAACCTTTCAACAAGGCC
____________________________________________________________
consensus AGAGGGAATTTTGCAACAATTTGGTTTTGATAATTATGAGGTCAACCTTTCAACAAGGCC
. : . : . : . : . : . :
rJMSF009C07+ AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
rJMSF002L24+ AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
rJMSF021P20+ AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
rJMSF021J21+ AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
____________________________________________________________
consensus AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
. : . : . : . : . : . :
rJMSF009C07+ TTTGAACGACAAATGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
rJMSF002L24+ TTTGAACGACAAAGGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
rJMSF021P20+ TTTGAACGACAAATGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
rJMSF021J21+ TTTGAACGACAAAGGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
____________________________________________________________
consensus TTTGAACGACAAATGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
. : . : . : . : . : . :
rJMSF009C07+ TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATNCA
rJMSF002L24+ TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATACA
rJMSF021P20+ TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATACA
rJMSF021J21+ TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATACA
____________________________________________________________
consensus TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATACA
. : . : . : . : . : . :
rJMSF009C07+ GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
rJMSF002L24+ GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
rJMSF021P20+ GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
rJMSF021J21+ GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
rJMFF043B18+ TCGGACCAAGAGAA
rJMFF051C18+ ACTCGGACCAAGAGAA
____________________________________________________________
consensus GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
. : . : . : . : . : . :
rJMSF009C07+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMSF002L24+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMSF021P20+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMSF021J21+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMFF043B18+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMFF051I16+ TTGGAGT
rJMFF051C18+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
____________________________________________________________
consensus GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
. : . : . : . : . : . :
rJMSF009C07+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMSF002L24+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMSF021P20+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMSF021J21+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMFF043B18+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMFF051I16+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMFF051K16+ TAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMFF051C18+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
____________________________________________________________
consensus CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
. : . : . : . : . : . :
rJMSF009C07+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMSF002L24+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACGAGGTGGAGAAGAGACTAAAGGC
rJMSF021P20+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMSF021J21+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACGAGGTGGAGAAGAGACTAAAGGC
rJMFF043B18+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMFF051I16+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMFF051K16+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMFF051C18+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
____________________________________________________________
consensus TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
. : . : . : . : . : . :
rJMSF009C07+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMSF002L24+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTACCAAAGCTCATTAGAAACGC
rJMSF021P20+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMSF021J21+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTACCAAAGCTCATTAGAAACGC
rJMFF043B18+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMFF051I16+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMFF051K16+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMFF051C18+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
____________________________________________________________
consensus GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
. : . : . : . : . : . :
rJMSF009C07+ AGAGAAGCAGAAGATCCCANTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMSF002L24+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMSF021P20+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMSF021J21+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMFF043B18+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMFF051I16+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMFF051K16+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMFF051C18+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
____________________________________________________________
consensus AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
. : . : . : . : . : . :
rJMSF009C07+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTACGGGACCATGCAGATTGATGACTTCA
rJMSF002L24+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMSF021P20+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMSF021J21+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMFF043B18+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMFF051I16+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMFF051K16+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMFF051C18+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
____________________________________________________________
consensus AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
. : . : . : . : . : . :
rJMSF009C07+ TCAGAGAAGCCAAGAATGCAATTGAGAACNGAACATTCTTTTGAAGTGTATACC
rJMSF002L24+ TCAGAAAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMSF021P20+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMSF021J21+ TCAGAAAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMFF043B18+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMFF051I16+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMFF051K16+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMFF051C18+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
____________________________________________________________
consensus TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
. : . : . : . : . : . :
rJMSF002L24+ TGTCGAACTCGCTGTGTTATGCGTT
rJMSF021P20+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAAC
rJMSF021J21+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAAC
rJMFF043B18+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
rJMFF051I16+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
rJMFF051K16+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
rJMFF051C18+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
____________________________________________________________
consensus TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
. : . : . : . : . : . :
rJMFF043B18+ AATTATCTGGTTCTTCACGAAATATCATCATTTTGAT
rJMFF051I16+ AATTATCTGGTTCTTCACGAAATATCATCATTTTGATAGATCAGGCTGGTTTTGACATGG
rJMFF051K16+ AATTATCTGGTTCTTCACGAAATATCATCATTTTGATAGATCAGGCTGGTTTTGACATGG
rJMFF051C18+ AATTATCTGGTTCTTCACGAAATATCATCATTTTGATAGATCAGGCTGGTTTTGACATGG
____________________________________________________________
consensus AATTATCTGGTTCTTCACGAAATATCATCATTTTGATAGATCAGGCTGGTTTTGACATGG
. : . : . : . : . : . :
rJMFF051I16+ CGTCAACCGGTTTNAAATAGAAAAAAAAAAAAAAACTCTCCAGGGT
rJMFF051K16+ CGTCAACCGGTTT
rJMFF051C18+ CGTCAACCGGTTT-AAATAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus CGTCAACCGGTTTNAAATAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG