| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010L14 | Sequence | 764 | 001242 (6) | gb|KHG24434.1| | 3e-84 | WD40 repeat-containing SMU1 [Gossypium arboreum] | |||||
| JMFF050J11 | Sequence | 630 | 010733 (4) | emb|CDP18866.1| | 4e-93 | unnamed protein product [Coffea canephora] | 546 | 001242 (6) | ref|NP_001234868.1| | 6e-51 | WD-40 repeat protein [Solanum lycopersicum] gb|AAK52092.1| WD-40 repeat protein |
| JMSF020I11 | Sequence | 707 | 001242 (6) | ref|XP_010255536.1| | 3e-163 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Nelumbo nucifera] | 716 | 001242 (6) | ref|XP_006356514.1| | 4e-88 | PREDICTED: WD40 repeat-containing protein SMU1-like [Solanum tuberosum] |
| JMSF026H21 | Sequence | 654 | 010733 (4) | emb|CDP18866.1| | 1e-102 | unnamed protein product [Coffea canephora] | 758 | 001242 (6) | ref|XP_010255536.1| | 2e-117 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Nelumbo nucifera] |
| JMSF030K19 | Sequence | 645 | 010733 (4) | emb|CDP18866.1| | 3e-117 | unnamed protein product [Coffea canephora] | 721 | 001242 (6) | ref|XP_010255536.1| | 2e-112 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
JMSF020I11- GCTGCATGATGATGCTGTGCTTTGT
____________________________________________________________
consensus GCTGCATGATGATGCTGTGCTTTGT
. : . : . : . : . : . :
JMSF020I11- GTTGATTTTAGCAGAGACTCTGAGATGCTTGCATCTGGATCTCAAGATGGAAAAATAAAG
____________________________________________________________
consensus GTTGATTTTAGCAGAGACTCTGAGATGCTTGCATCTGGATCTCAAGATGGAAAAATAAAG
. : . : . : . : . : . :
JMSF020I11- GTGTGGCGTATATGAACTGGTCAGTGCTTGCGCCGTCTTGAACGGGCACATTCTCAGGGT
____________________________________________________________
consensus GTGTGGCGTATATGAACTGGTCAGTGCTTGCGCCGTCTTGAACGGGCACATTCTCAGGGT
. : . : . : . : . : . :
JMSF020I11- GTCACTAGTCTTGTCTTCTCTAGAGATGGAAGTCAGATCTTGAGCGCATCGTTTGACAGC
____________________________________________________________
consensus GTCACTAGTCTTGTCTTCTCTAGAGATGGAAGTCAGATCTTGAGCGCATCGTTTGACAGC
. : . : . : . : . : . :
JMSF020I11- ACTGCCAGAATCCATGGCCTGAAATCGGGGAAATTATTAAAAGAATTCCGTGGCCACACA
rJMSF020I11+ CACACA
rJMSF030K19+ CGTGGCCACACA
rJMSF026H21+ ATCGGGGAAATTANTAAAAGAATTCCGTGGCCACACA
rJMFF010L14+ ATCGGGGAAATTATTAAAAGAATTCCGTGGCCACACA
____________________________________________________________
consensus ACTGCCAGAATCCATGGCCTGAAATCGGGGAAATTATTAAAAGAATTCCGTGGCCACACA
. : . : . : . : . : . :
JMSF020I11- TCTTATGTGAATGATGGTATTTTTACTAATGATGGATCTCGAGTCATCACGGCATCTAGT
rJMSF020I11+ TCTTATGTGAATGATGGTANTTTTACTAATGATGGATCTCGAGTCATCACGGCATCTAGT
rJMSF030K19+ TCTTATGTGAATGATGGTATTTTTACTAATGATGGATCTCGAGTCATCACGGCATCTAGT
rJMSF026H21+ TCTTATGTGAATGATGGTATTTTTACTAATGATGGATCTCGAGTCATCACGGCATCTAGT
rJMFF010L14+ TCTTATGTGAATGATGGTATTTTTACTAATGATGGATCTCGAGTCATCACGGCATCTAGT
____________________________________________________________
consensus TCTTATGTGAATGATGGTATTTTTACTAATGATGGATCTCGAGTCATCACGGCATCTAGT
. : . : . : . : . : . :
JMSF020I11- GATTGCACAGTGAAGGTTTGGGATTTGAAGACCACAGACTGTCTACAGACCTTCAAACCT
rJMSF020I11+ GATTGCACAGTGAAGGTTTGGGA-TTGAAGACCACAGACTGTCTACAGACCTTCAAACCT
rJMSF030K19+ GATTGCACAGTGAAGGTTTGGGATTTGAAGACCACAGACTGTCTACAGACCTTCAAACCT
rJMSF026H21+ GATTGCACAGTGAAGGTTTGGGATTTGAAGACCACAGACTGTCTACAGACCTTCAAACCT
rJMFF010L14+ GATTGCACAGTGAAGGTTTGGGATTTGAAGACCACAGACTGTCTACAGACCTTCAAACCT
____________________________________________________________
consensus GATTGCACAGTGAAGGTTTGGGATTTGAAGACCACAGACTGTCTACAGACCTTCAAACCT
. : . : . : . : . : . :
JMSF020I11- -CCACCTCCTTTGAGGGGAGGCGATGCATCTGTAAATTCTGTTCATCTTTATCCCAAGAA
rJMSF020I11+ -CCACCTCCTTTGAGGGGAGGCGATGCATCTGTAAATTCTGTTCATCTTTATCCCAAGAA
rJMSF030K19+ -CCACCTCCTTTGAGGGGAGGCGATGCATCTGTAAATTCTGTTCATCTTTATCCCAAGAA
rJMSF026H21+ -CCACCTCCTTTGAGGGGAGGCGATGCATCTGTAAATTCTGTTCATCTTTATCCCAAGAA
rJMFF010L14+ CCCACCTCCTTTGAGGGGAGGCGATGCATCTGTAAATTCTGTTCATCTTTATCCCAAGAA
____________________________________________________________
consensus -CCACCTCCTTTGAGGGGAGGCGATGCATCTGTAAATTCTGTTCATCTTTATCCCAAGAA
. : . : . : . : . : . :
JMSF020I11- TACAGATCATATAGTTGTGTGTAACAAGACATCATCAATATACCTGATGACCCTTCAAGG
rJMSF020I11+ TACAGATCATATAGTTGTGTGTAACAAGACATCATCAATATACCTGATGACCCTTCAAGG
rJMSF030K19+ TACAGATCATATAGTTGTGTGTAACAAGACATCATCAATATACCTGATGACCCTTCAAGG
rJMSF026H21+ TACAGATCATATAGTTGTGTGTAACAAGACATCATCAATATACCTGATGACCCTTCAAGG
rJMFF010L14+ TACAGATCATATAGTTGTGTGTAACAAGACATCATCAATATACCTGATGACCCTTCAAGG
rJMFF050J11+ TCAAGG
____________________________________________________________
consensus TACAGATCATATAGTTGTGTGTAACAAGACATCATCAATATACCTGATGACCCTTCAAGG
. : . : . : . : . : . :
JMSF020I11- GCAGGTTGTGAAAAGTTTCTCATCTGGTAAGAGAGAAGGCGGTGATTTTGTGGCAGCCTG
rJMSF020I11+ GCAGGTTGTGAAAAGTTTCTCATCTGGTAAGAGAGAAGGCGGTGATTTTGTGGCAGCCTG
rJMSF030K19+ GCAGGTTGTGAAAAGTTTCTCATCTGGTAAGAGAGAAGGCGGTGATTTTGTGGCAGCCTG
rJMSF026H21+ GCAGGTTGTGAAAAGTTTCTCATCTGGTAAGAGAGAAGGCGGTGATTTTGTGGCAGCCTG
rJMFF010L14+ GCAGGTTGTGAAAAGTTTCTCATCTGGTAAGAGAGAAGGCGGTGATTTTGTGGCAGCCTG
rJMFF050J11+ GCAGGTTGTGAAAAGTTTCTCATCTGGTAAGAGAGAAGGCGGTGATTTTGTGGCAGCCTG
____________________________________________________________
consensus GCAGGTTGTGAAAAGTTTCTCATCTGGTAAGAGAGAAGGCGGTGATTTTGTGGCAGCCTG
. : . : . : . : . : . :
JMSF020I11- TGTATCGCCCAAAGGAGAATGGATATACTGTGTCGGTGAAGACAGAAACCTGTACTGCTT
rJMSF020I11+ TGTATCGCCCAAAGGAGAATGGATATACTGTGTCGGTGAAGACAGAAACCTGTACTGCTT
rJMSF030K19+ TGTATCGCCCAAAGGAGAATGGATATACTGTGTCGGTGAAGACAGAAACCTGTACTGCTT
rJMSF026H21+ TGTATCGCCCAAAGGAGAATGGATATACTGTGTCGGTGAAGACAGAAACCTGTACTGCTT
rJMFF010L14+ TGTATCGCCCAAAGGAGAATGGATATACT-TGTCGGTGAAGACAGAAACCTGTACTGCTT
rJMFF050J11+ TGTATCGCCCAAAGGAGAATGGATATACTGTGTCGGTGAAGACAGAAACCTGTACTGCTT
____________________________________________________________
consensus TGTATCGCCCAAAGGAGAATGGATATACTGTGTCGGTGAAGACAGAAACCTGTACTGCTT
. : . : . : . : . : . :
JMSF020I11- TAGCTGTCAATCTGGCAAACTGGAACATTTGATGAAGGTGCATGAGAAGGATGTGATTGG
rJMSF020I11+ TAGCTGTCAATCTGGCAAACTGGAACATTTGATGAAGGTGCATGAGAAGGATGTGATTGG
rJMSF030K19+ TAGCTGTCAATCTGGCAAACTGGAACATTTGATGAAGGTGCATGAGAAGGATGTGATTGG
rJMSF026H21+ TAGCTGTCAATCTGGCAAACTGGAACATTTGATGAAGGTGCATGAGAAGGATGTGATTGG
rJMFF010L14+ TAGCTGTCAATCTGGCAAACTGGAACATTTGATGAAGGTGCATGAGAAGGATGTGATTGG
rJMFF050J11+ TAGCTGTCAATCTGGCAAACTGGAACATTTGATGAAGGTGCATGAGAAGGATGTGATTGG
____________________________________________________________
consensus TAGCTGTCAATCTGGCAAACTGGAACATTTGATGAAGGTGCATGAGAAGGATGTGATTGG
. : . : . : . : . : . :
JMSF020I11- TATCACTCACCATCCCCATATAA
rJMSF020I11+ TATCACTCACCATCCCCATATAAATCTTGTTGCCACTTACGGTGAAGACTGTACCATGAA
rJMSF030K19+ TATCACTCACCATCCCCATATAAATCTTGTTGCCACTTACGGTGAAGACTGTACCATGAA
rJMSF026H21+ TATCACTCACCATCCCCATATAAATCTTGTTGCCACTTACGGTGAAGACTGTACCATGAA
rJMFF010L14+ TATCACTCACCATCCCCATATAAATCTTGTTGCCACTTACGGTGAAGACTGTACCATGAA
rJMFF050J11+ TATCACTCACCATCCCCATATAAATCTTGTTGCCACTTACGGTGAAGACTGTACCATGAA
____________________________________________________________
consensus TATCACTCACCATCCCCATATAAATCTTGTTGCCACTTACGGTGAAGACTGTACCATGAA
. : . : . : . : . : . :
rJMSF020I11+ ATTATGGAAGCCGTAGTTGTCCCTCGCGTTGTGAAGTTGTGGAATGAAATTCTATTTCTA
rJMSF030K19+ ATTATGGAAGCCGTAGTTGTCCCTCGCGTTGTGAAGTTGTGGAATGAAATTCTATTTCTA
rJMSF026H21+ ATTATGGAAGCCGTAGTTGTCCCTCGCGTTGTGAAGTTGTGGAATGAAATTCTATTTCTA
rJMFF010L14+ ATTATGGAAGCCGTAGTTGTCCCTCGCGTTGTGAAGTTGTGGAATGAAATTCTATTTCTA
rJMFF050J11+ ATTATGGAAGCCGTAGTTGTCCCTCGCGTTGTGAAGTTGTGGAATGAAATTCTATTTCTA
____________________________________________________________
consensus ATTATGGAAGCCGTAGTTGTCCCTCGCGTTGTGAAGTTGTGGAATGAAATTCTATTTCTA
. : . : . : . : . : . :
rJMSF020I11+ ATCCCACCATTTGCTTCTCGACGACCATCTTTGATTATTGTAGTATCAAGTTTATTTTTG
rJMSF030K19+ ATCCCACCATTTGCTTCTCGACGACCATCTTTGATTATTGTAGTATCAAGTTTATTTTTG
rJMSF026H21+ ATCCCACCATTTGCTTCTCGACGACCATCTTTGATTATTGTAGTATCAAGTTTATTTTTG
rJMFF010L14+ ATCCCACCATTTGCTTCTCGACGACCATCTTTGATTATTGTAGTATCAAGTTTATTTTTG
rJMFF050J11+ ATCCCACCATTTGCTTCTCGACGACCATCTTTGATTATTGTAGTATCAAGTTTATTTTTG
____________________________________________________________
consensus ATCCCACCATTTGCTTCTCGACGACCATCTTTGATTATTGTAGTATCAAGTTTATTTTTG
. : . : . : . : . : . :
rJMSF020I11+ TACCAGTGTATACAACCATGGACCACCAACCCAGACTTCTACTCAAAATTGACAAATCAA
rJMSF030K19+ TACCAGTGTATACAACCATGGACCACCAACCCAGACTTCTACTCAAAATTGACAAATCAA
rJMSF026H21+ TACCAGTGTATACAACCATGGACCACCAACCCAGACTTCTACTCAAAATTGACAAATCAA
rJMFF010L14+ TACCAGTGTATACAACCATGGACCACCAACCCAGACTTCTACTCAAAATTGACAAATCAA
rJMFF050J11+ TACCAGTGTATACAACCATGGACCACCAACCCAGACTTCTACTCAAAATTGACAAATCAA
____________________________________________________________
consensus TACCAGTGTATACAACCATGGACCACCAACCCAGACTTCTACTCAAAATTGACAAATCAA
. : . : . : . : . : . :
rJMSF020I11+ TGTACTAGTTCTGATAGACTAGATACC
rJMSF030K19+ TGTACTAGTTCTGATAGACTAGATACCTGTTTCTGTAAATTAATTCATGT
rJMSF026H21+ TGTACTAGTTNGGATAGACTAGATACCTGTTTCTGTAAATTAATTCATGTTATTGCTACT
rJMFF010L14+ TGTACTAGTTCTGATAGACTAGATACCTGTTTCTGTAAATTAATTCATGTTATTGCTACT
rJMFF050J11+ TGTACTAGTTCTGATAGACTAGATACCTGTTTCTGTAAATTAATTCATGTTATTGCTACT
____________________________________________________________
consensus TGTACTAGTTCTGATAGACTAGATACCTGTTTCTGTAAATTAATTCATGTTATTGCTACT
. : . : . : . : . : . :
rJMSF026H21+ T
rJMFF010L14+ T
rJMFF050J11+ TTGGTTTTTGAGTAATATTACACTTGTTTTCTCAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus TTGGTTTTTGAGTAATATTACACTTGTTTTCTCAAAAAAAAAAAAAAAACTCTCCAGGGT