Contig 001241:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004E06Sequence591004455 (4)ref|XP_009632054.1|3e-77PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis]792001241 (5)ref|XP_006368050.1|2e-157PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan
JMFF013K11Sequence556004455 (4)ref|XP_009632054.1|1e-69PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis]736001241 (5)ref|XP_006368050.1|9e-159PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan
JMFF050H12Sequence488004455 (4)ref|XP_009632054.1|2e-51PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis]480001241 (5)ref|XP_006368050.1|8e-59PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan
JMFN034A05Sequence630001241 (5)ref|XP_006368050.1|9e-134PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan
JMSF032L09Sequence676004455 (4)ref|XP_009632054.1|9e-101PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis]720001241 (5)ref|XP_006368050.1|4e-149PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF013K11+ CAAGGATGCTACATCAGAAGCTAT
rJMFF004E06+ CAAGGATGCTACATCAGAAGCTAT
                      ____________________________________________________________
consensus CAAGGATGCTACATCAGAAGCTAT
 
. : . : . : . : . : . :
rJMFF013K11+ TCGGGATTGGGTTACCAATGTTGAAACAACTCATTACATCCTGGGATCTGTTGCCGGGCC
rJMSF032L09+ TTACCAATGTTGAAACAACTCATTACATCCTGGGATCTGTTGCCGGGCC
rJMFF004E06+ TCGGGATTGGGTTACCAATGTTGAAACAACTCATTACATCCTGGGATCTGTTGCCGGGCC
                      ____________________________________________________________
consensus TCGGGATTGGGTTACCAATGTTGAAACAACTCATTACATCCTGGGATCTGTTGCCGGGCC
 
. : . : . : . : . : . :
JMFN034A05- CCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
rJMFF013K11+ GCACCCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
rJMSF032L09+ GCACCCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
rJMFF004E06+ GCACCCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
                      ____________________________________________________________
consensus GCACCCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
 
. : . : . : . : . : . :
JMFN034A05- GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
rJMFF013K11+ GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
rJMSF032L09+ GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
rJMFF004E06+ GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
                      ____________________________________________________________
consensus GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
 
. : . : . : . : . : . :
JMFN034A05- TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
rJMFF013K11+ TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
rJMSF032L09+ TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
rJMFF004E06+ TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
                      ____________________________________________________________
consensus TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
 
. : . : . : . : . : . :
JMFN034A05- CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
rJMFF013K11+ CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
rJMSF032L09+ CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
rJMFF004E06+ CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
                      ____________________________________________________________
consensus CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
 
. : . : . : . : . : . :
JMFN034A05- AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
rJMFF013K11+ AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
rJMSF032L09+ AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
rJMFF004E06+ AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
                      ____________________________________________________________
consensus AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
 
. : . : . : . : . : . :
JMFN034A05- AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGAAGTTGGACCCGAGCATAG
rJMFF013K11+ AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
rJMSF032L09+ AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
rJMFF004E06+ AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
rJMFF050H12+ AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
                      ____________________________________________________________
consensus AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
 
. : . : . : . : . : . :
JMFN034A05- CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
rJMFF013K11+ CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
rJMSF032L09+ CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
rJMFF004E06+ CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
rJMFF050H12+ CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
                      ____________________________________________________________
consensus CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
 
. : . : . : . : . : . :
JMFN034A05- AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
rJMFF013K11+ AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
rJMSF032L09+ AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
rJMFF004E06+ AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
rJMFF050H12+ AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
                      ____________________________________________________________
consensus AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
 
. : . : . : . : . : . :
JMFN034A05- GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
rJMFF013K11+ GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
rJMSF032L09+ GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
rJMFF004E06+ GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
rJMFF050H12+ GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
                      ____________________________________________________________
consensus GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
 
. : . : . : . : . : . :
JMFN034A05- CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCNAATACTTGGAGGTTTGATC
rJMFF013K11+ CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGTTTGATC
rJMSF032L09+ CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGTTTGATC
rJMFF004E06+ CTGCAGTGACAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGTTTGATC
rJMFF050H12+ CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGCTTGATC
                      ____________________________________________________________
consensus CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGTTTGATC
 
. : . : . : . : . : . :
JMFN034A05- GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATG
rJMFF013K11+ GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTG
rJMSF032L09+ GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTGTGAAAACAAATTTTGTTTCT
rJMFF004E06+ GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTGTGAAAACAAATTTTGTTTCT
rJMFF050H12+ GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTGTGAAAACAAATTTTGTTTCT
                      ____________________________________________________________
consensus GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTGTGAAAACAAATTTTGTTTCT
 
. : . : . : . : . : . :
rJMSF032L09+ TGAACAATTCA
rJMFF004E06+ TGAACAATTCATATAGAGCATGATCTGATAATATTTGCATCAACAAAA
rJMFF050H12+ TGAACAATTCATATAGAGCATGATCTGATAATATTTGCATCAACAAAATGTTTCTTATAA
                      ____________________________________________________________
consensus TGAACAATTCATATAGAGCATGATCTGATAATATTTGCATCAACAAAATGTTTCTTATAA
 
. : . : . : . : . : . :
rJMFF050H12+ GGCAGCAGACTTGCATGXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus GGCAGCAGACTTGCATGNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG