clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF004E06 | Sequence | 591 | 004455 (4) | ref|XP_009632054.1| | 3e-77 | PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis] | 792 | 001241 (5) | ref|XP_006368050.1| | 2e-157 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan |
JMFF013K11 | Sequence | 556 | 004455 (4) | ref|XP_009632054.1| | 1e-69 | PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis] | 736 | 001241 (5) | ref|XP_006368050.1| | 9e-159 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan |
JMFF050H12 | Sequence | 488 | 004455 (4) | ref|XP_009632054.1| | 2e-51 | PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis] | 480 | 001241 (5) | ref|XP_006368050.1| | 8e-59 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan |
JMFN034A05 | Sequence | 630 | 001241 (5) | ref|XP_006368050.1| | 9e-134 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan | |||||
JMSF032L09 | Sequence | 676 | 004455 (4) | ref|XP_009632054.1| | 9e-101 | PREDICTED: tryptophan synthase beta chain 1 [Nicotiana tomentosiformis] | 720 | 001241 (5) | ref|XP_006368050.1| | 4e-149 | PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like, partial [Solan |
This contig is upended
. : . : . : . : . : . :
rJMFF013K11+ CAAGGATGCTACATCAGAAGCTAT
rJMFF004E06+ CAAGGATGCTACATCAGAAGCTAT
____________________________________________________________
consensus CAAGGATGCTACATCAGAAGCTAT
. : . : . : . : . : . :
rJMFF013K11+ TCGGGATTGGGTTACCAATGTTGAAACAACTCATTACATCCTGGGATCTGTTGCCGGGCC
rJMSF032L09+ TTACCAATGTTGAAACAACTCATTACATCCTGGGATCTGTTGCCGGGCC
rJMFF004E06+ TCGGGATTGGGTTACCAATGTTGAAACAACTCATTACATCCTGGGATCTGTTGCCGGGCC
____________________________________________________________
consensus TCGGGATTGGGTTACCAATGTTGAAACAACTCATTACATCCTGGGATCTGTTGCCGGGCC
. : . : . : . : . : . :
JMFN034A05- CCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
rJMFF013K11+ GCACCCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
rJMSF032L09+ GCACCCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
rJMFF004E06+ GCACCCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
____________________________________________________________
consensus GCACCCATATCCCATGATGGTTAGAGACTTTCATGCAGTGATTGGCAAAGAAACAAGAAG
. : . : . : . : . : . :
JMFN034A05- GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
rJMFF013K11+ GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
rJMSF032L09+ GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
rJMFF004E06+ GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
____________________________________________________________
consensus GCAAGCATTGGAAAAATGGGGTGGGAAGCCCGATGTGCTTGTTGCATGTGTTGGTGGAGG
. : . : . : . : . : . :
JMFN034A05- TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
rJMFF013K11+ TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
rJMSF032L09+ TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
rJMFF004E06+ TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
____________________________________________________________
consensus TTCTAATGCTATGGGACTATTTCATGAGTTTATTGATGATGAAGATGTGAGGTTGATTGG
. : . : . : . : . : . :
JMFN034A05- CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
rJMFF013K11+ CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
rJMSF032L09+ CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
rJMFF004E06+ CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
____________________________________________________________
consensus CGTGGAGGCTGCCGGTTTTGGTTTAGATAGTGGCAAACACGCTGCTACTTTAACAAAGGG
. : . : . : . : . : . :
JMFN034A05- AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
rJMFF013K11+ AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
rJMSF032L09+ AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
rJMFF004E06+ AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
____________________________________________________________
consensus AGAGGTTGGAGTGCTACATGGAGCTATGAGCTATCTGCTTCAGGATGATGATGGGCAGAT
. : . : . : . : . : . :
JMFN034A05- AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGAAGTTGGACCCGAGCATAG
rJMFF013K11+ AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
rJMSF032L09+ AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
rJMFF004E06+ AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
rJMFF050H12+ AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
____________________________________________________________
consensus AGTTGAGCCACATTCCATTAGTGCTGGGTTGGATTATCCTGGAGTTGGACCCGAGCATAG
. : . : . : . : . : . :
JMFN034A05- CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
rJMFF013K11+ CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
rJMSF032L09+ CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
rJMFF004E06+ CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
rJMFF050H12+ CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
____________________________________________________________
consensus CTTTCTGAAAGACCTTGGACGAGCTGAATACTATAGCATCACTGATGAAGAGGCTTTAGA
. : . : . : . : . : . :
JMFN034A05- AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
rJMFF013K11+ AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
rJMSF032L09+ AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
rJMFF004E06+ AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
rJMFF050H12+ AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
____________________________________________________________
consensus AGCATTCAAGAGATTATCTCGGCTAGAAGGCATTATTCCTGCATTGGAGACATCACATGC
. : . : . : . : . : . :
JMFN034A05- GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
rJMFF013K11+ GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
rJMSF032L09+ GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
rJMFF004E06+ GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
rJMFF050H12+ GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
____________________________________________________________
consensus GTTGGCTTATCTAGAGAAACTGTGCCCAACTCTGCCAGATGGCACTAAGGTTGTACTTAA
. : . : . : . : . : . :
JMFN034A05- CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCNAATACTTGGAGGTTTGATC
rJMFF013K11+ CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGTTTGATC
rJMSF032L09+ CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGTTTGATC
rJMFF004E06+ CTGCAGTGACAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGTTTGATC
rJMFF050H12+ CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGCTTGATC
____________________________________________________________
consensus CTGCAGTGGCAGAGGAGATAAGGATGTTCACACTGCTATCAAATACTTGGAGGTTTGATC
. : . : . : . : . : . :
JMFN034A05- GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATG
rJMFF013K11+ GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTG
rJMSF032L09+ GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTGTGAAAACAAATTTTGTTTCT
rJMFF004E06+ GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTGTGAAAACAAATTTTGTTTCT
rJMFF050H12+ GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTGTGAAAACAAATTTTGTTTCT
____________________________________________________________
consensus GATGGCGCTTTTTGTTGTTAGACAGGGCTGCATGTGGTTGTGAAAACAAATTTTGTTTCT
. : . : . : . : . : . :
rJMSF032L09+ TGAACAATTCA
rJMFF004E06+ TGAACAATTCATATAGAGCATGATCTGATAATATTTGCATCAACAAAA
rJMFF050H12+ TGAACAATTCATATAGAGCATGATCTGATAATATTTGCATCAACAAAATGTTTCTTATAA
____________________________________________________________
consensus TGAACAATTCATATAGAGCATGATCTGATAATATTTGCATCAACAAAATGTTTCTTATAA
. : . : . : . : . : . :
rJMFF050H12+ GGCAGCAGACTTGCATGXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus GGCAGCAGACTTGCATGNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG