Contig 001238:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004J04Sequence563003294 (7)ref|XP_009764855.1|239PREDICTED: uncharacterized protein LOC104216499 [Nicotiana sylvestris]672001238 (3)emb|CDO99929.1|2e-18unnamed protein product [Coffea canephora]
JMFF038P20Sequence563003294 (7)ref|XP_009764855.1|239PREDICTED: uncharacterized protein LOC104216499 [Nicotiana sylvestris]657001238 (3)emb|CDO99929.1|8e-34unnamed protein product [Coffea canephora]
JMFF050C04Sequence607003294 (7)ref|XP_009764855.1|269PREDICTED: uncharacterized protein LOC104216499 [Nicotiana sylvestris]593001238 (3)emb|CDO99929.1|6e-05unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF038P20+                         CCGAGGAAGAAGTGGTGAGCAAGAAAAGGGCGAGAGATGAGCAAG
                      ____________________________________________________________
consensus                            CCGAGGAAGAAGTGGTGAGCAAGAAAAGGGCGAGAGATGAGCAAG
 
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rJMFF038P20+          GAAGAAGCTATCTTGAGNGGTTCATGGACGCGGTTCGAGAAAACCCTAGCCGGGTTTTCT
rJMFF004J04+                                                                     T
                      ____________________________________________________________
consensus             GAAGAAGCTATCTTGAGNGGTTCATGGACGCGGTTCGAGAAAACCCTAGCCGGGTTTTCT
 
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rJMFF038P20+          TCATGGAGGATNTTGATCAAGCCGATTACCATTCCCAAAAGGGAATCAAGAAACTCATTG
rJMFF004J04+          TCATGGAGGATNTTGATCAAGCCGATTACCATTCCCAAAAGGGAATCAAGAAACTCATTG
                      ____________________________________________________________
consensus             TCATGGAGGATNTTGATCAAGCCGATTACCATTCCCAAAAGGGAATCAAGAAACTCATTG
 
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rJMFF038P20+          AAAGCGGGAGCTTTACGCCGCCGCACGACGGCGGCGGCGAGGTGGTGGGAATGAAGGACG
rJMFF004J04+          AAAGCGGGAGCTTTACGCCGCCGCACGACGGCGGCGGCGAGGTGGTGGGAATGAAGGACG
                      ____________________________________________________________
consensus             AAAGCGGGAGCTTTACGCCGCCGCACGACGGCGGCGGCGAGGTGGTGGGAATGAAGGACG
 
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rJMFF038P20+          CCATTGTCATTTTCAGCTGNGAAAGCTCCGGCTCGAGAGCCCCCTNTCCTCCTCCTTCCC
rJMFF004J04+          CCATTGTCATTTTCAGCTGNGAAAGCTCCGGCTCGAGAGCCCCCTTTCCTCCTCCTTCCC
rJMFF050C04+                 CATTTTCAGCTGCGAAAGCTCCGGCTCGAGAGCCCCCTCTCCTCCTCCTTCCC
                      ____________________________________________________________
consensus             CCATTGTCATTTTCAGCTGCGAAAGCTCCGGCTCGAGAGCCCCCTTTCCTCCTCCTTCCC
 
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rJMFF038P20+          CGCCAAAACACATTCAAGAAAACAAAGATCAAGAAAAGCCATGTTGGGATNTTAACGTTG
rJMFF004J04+          CGCCAAAACACATTCAAGAAAACAAAGATCAAGAAAAGCCATGTTTGGATNTTAACGTTG
rJMFF050C04+          CGCCAAAACACATTCAAGAAAACAAAGATCAAGAAAAGCCATGTTTGGATCTTAACGTTG
                      ____________________________________________________________
consensus             CGCCAAAACACATTCAAGAAAACAAAGATCAAGAAAAGCCATGTTTGGATCTTAACGTTG
 
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rJMFF038P20+          CAAGTGAAGATCATAGTGACGAACGTTGTTCAACTCCGAACAATAATGCTGGGATTTTGG
rJMFF004J04+          CAAGTGAAGATCATAGTGACGAACGTTGTTCAACTCCGAACAATAATGCTGGGATTTTGG
rJMFF050C04+          CAAGTGAAGATCATAGTGACGAACGTTGTTCAACTCCGAACAATAATGCTGGGATTTTGG
                      ____________________________________________________________
consensus             CAAGTGAAGATCATAGTGACGAACGTTGTTCAACTCCGAACAATAATGCTGGGATTTTGG
 
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rJMFF038P20+          AAGCTGTGGATAAACAAATCCTGTTTAAAATTCAAGTNTTGTGAGAGCACGAAATCACAA
rJMFF004J04+          AAGCTGTGGATAAACAAATCCTGTTTAAAATTCAAGTNTTGTGAGAGCACGAAATCACAA
rJMFF050C04+          AAGCTGTGGATAAACAAATCCTGTTTAAAATTCAAGTCTTGTGAGAGCACGAAATCACAA
                      ____________________________________________________________
consensus             AAGCTGTGGATAAACAAATCCTGTTTAAAATTCAAGTCTTGTGAGAGCACGAAATCACAA
 
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rJMFF038P20+          ATCCTGTCGGGTCGGATGTGAAACTAGCACTCAGAAAATTATGTAGAATTTTCCTTTTTT
rJMFF004J04+          ATCCTGTCGGGTCGGATGTGAAACTAGCACTCAGAAAATTATGTAGAATTTTCCTTTTTT
rJMFF050C04+          ATCCTGTCGGGTCGGATGTGAAACTAGCACTCAGAAAATTATGTAGAATTTTCCTTTTTT
                      ____________________________________________________________
consensus             ATCCTGTCGGGTCGGATGTGAAACTAGCACTCAGAAAATTATGTAGAATTTTCCTTTTTT
 
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rJMFF038P20+          TGTTTATTTTCAGTCTTTTTTTTTTCTTTGTTTGTAATTTTATGTTTAAATTTCAAAAAA
rJMFF004J04+          TGTTTATTTTCAGTCTTTTTTTTTTCTTTGTTTGTAATTTTATGTTTAAATTTCAAAAAA
rJMFF050C04+          TGTTTATTTTCAGTCTTTTTTTTTTCTTTGTTTGTAATTTTATGTTTAAATTTCAAAAAA
                      ____________________________________________________________
consensus             TGTTTATTTTCAGTCTTTTTTTTTTCTTTGTTTGTAATTTTATGTTTAAATTTCAAAAAA
 
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rJMFF038P20+          AGAAATGGGGGAAAGGGGTAAAGTTAAGATTATCTGACAGGTCCCATAGATTTTAGGTGG
rJMFF004J04+          AGAAATGGGGGAAAGGGGTAAAGTTAAGATTATCTGACAGGTCCCATAGATTTTAGGTGG
rJMFF050C04+          AGAAATGGGGGAAAGGGGTAAAGTTAAGATTATCTGACAGGTCCCATAGATTTTAGGTGG
                      ____________________________________________________________
consensus             AGAAATGGGGGAAAGGGGTAAAGTTAAGATTATCTGACAGGTCCCATAGATTTTAGGTGG
 
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rJMFF038P20+          AGT                                                         
rJMFF004J04+          AGTTGAAGTAGAATGAAATGAAATGTACATTTGACGTACACTTGTTTGTTCTTGTTGTGT
rJMFF050C04+          AGTTGAAGTAGAATGAAATGAAATGTACATTTGACGTACACTTGTTTGTTCTTGTTGTGT
                      ____________________________________________________________
consensus             AGTTGAAGTAGAATGAAATGAAATGTACATTTGACGTACACTTGTTTGTTCTTGTTGTGT
 
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rJMFF004J04+          TTTACGGTCAATAATTTTAATATATTTTATGGTTTTAAGCTGTAATCTCTCTTTGCTAAT
rJMFF050C04+          TTTACGGTCAATAATTTTAATATATTTTATGGTTTTAAGCTGTAATCTCTCTTTGCTAAT
                      ____________________________________________________________
consensus             TTTACGGTCAATAATTTTAATATATTTTATGGTTTTAAGCTGTAATCTCTCTTTGCTAAT
 
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rJMFF004J04+          TGCTATAAATA                                                 
rJMFF050C04+          TGCTATAAATATAATTAAGAAAGATTTTGTGAGAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TGCTATAAATATAATTAAGAAAGATTTTGTGAGAAAAAAAAAAAAAAAACTCTCCAGGGT