Contig 001237:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050B06Sequence634005075 (2)ref|XP_006384514.1|2e-95hypothetical protein POPTR_0004s16510g [Populus trichocarpa] gb|ERP62311.1| hypo557001237 (3)ref|XP_006411719.1|3e-21hypothetical protein EUTSA_v10024693mg [Eutrema salsugineum] gb|ESQ53172.1| hypo
JMFN037I02Sequence613001237 (3)emb|CDP20068.1|4e-65unnamed protein product [Coffea canephora]
JMSF022C09Sequence664005075 (2)ref|XP_006384514.1|2e-101hypothetical protein POPTR_0004s16510g [Populus trichocarpa] gb|ERP62311.1| hypo743001237 (3)emb|CDP20068.1|1e-56unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN037I02-                                            TAAACCCCGTTTCCCAATGGTAAAAGG
                      ____________________________________________________________
consensus                                              TAAACCCCGTTTCCCAATGGTAAAAGG
 
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JMFN037I02-           CAGTGACACATCAGCTGAGTCGGGATCTGAAGCTGAAGAAATTGCTTCACCGAAAGCTAA
                      ____________________________________________________________
consensus             CAGTGACACATCAGCTGAGTCGGGATCTGAAGCTGAAGAAATTGCTTCACCGAAAGCTAA
 
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JMFN037I02-           GAGGAGTTTTTCACAGCTTAGGCTTACTCCTGTTCGTGAAGAGGCAAGAGTTATTGGGAC
                      ____________________________________________________________
consensus             GAGGAGTTTTTCACAGCTTAGGCTTACTCCTGTTCGTGAAGAGGCAAGAGTTATTGGGAC
 
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JMFN037I02-           AACAATCATCTCAGGATTTGATGAATATGTTCCCATGGTTGATAAGGCTGTTGATTCTGG
                      ____________________________________________________________
consensus             AACAATCATCTCAGGATTTGATGAATATGTTCCCATGGTTGATAAGGCTGTTGATTCTGG
 
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JMFN037I02-           TTTGAAGAAACAATCATATCTTCAAAAGCCATATGTTCCTAAAGCGACGCTTTCACCACC
rJMSF022C09+              AAGAAACAATCATATCTTCAAAAGCCATATGTTCCTAAAGCGACGCTTTCACCACC
                      ____________________________________________________________
consensus             TTTGAAGAAACAATCATATCTTCAAAAGCCATATGTTCCTAAAGCGACGCTTTCACCACC
 
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JMFN037I02-           CGTTACTCAAAACACTCCGGATGGGCTTCATGCTCGCATTTTAGGAGCTCTTATGGCTTT
rJMSF022C09+          CGTTACTCAAAACACTCCGGATGGGCTTCATGCTCGCATTTTAGGAGCTCTTATGGCTTT
                      ____________________________________________________________
consensus             CGTTACTCAAAACACTCCGGATGGGCTTCATGCTCGCATTTTAGGAGCTCTTATGGCTTT
 
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JMFN037I02-           CTTCATGGCTGTTTTCATGCTTTTCCGCTCTGTGGTTTCCTGCATAACCAAGAAACTTCC
rJMSF022C09+          CTTCATGGCTGTTTTCATGCTTTTCCGCTCTGTGGTTTCCTGCATAACCAAGAAACTTCC
                      ____________________________________________________________
consensus             CTTCATGGCTGTTTTCATGCTTTTCCGCTCTGTGGTTTCCTGCATAACCAAGAAACTTCC
 
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JMFN037I02-           AGATGCATCCCCCCCTCGGGATCAAGCTCTTGGTGAATTCTCGTCTGCAGAAATCCCCAA
rJMSF022C09+          AGATGCATCCCCCCCTCGGGATCAAGCTCTTGGTGAATTCTCGTCTGCAGAAATCCCCAA
                      ____________________________________________________________
consensus             AGATGCATCCCCCCCTCGGGATCAAGCTCTTGGTGAATTCTCGTCTGCAGAAATCCCCAA
 
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JMFN037I02-           GGAAGAGTTTCGCCCCCCTTCACCAACTCCAGCTTATACAGAAGCTGAACTTCTCTCTGC
rJMSF022C09+          GGAAGAGTTTCGCCCCCCTTCACCAACTCCAGCTTATACAGAAGCTGAACTTCTCTCTGC
                      ____________________________________________________________
consensus             GGAAGAGTTTCGCCCCCCTTCACCAACTCCAGCTTATACAGAAGCTGAACTTCTCTCTGC
 
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JMFN037I02-           TGTGCTCAAGAGACTAGGTGAACTAGAGGAGAAAGTAAATTCGATTCAAAGAAAGCCATC
rJMSF022C09+          TGTGCTCAAGAGACTAGGTGAACTAGAGGAGAAAGTAAATTCGATTCAAAGAAAGCCATC
rJMFF050B06+                                                             AAAGCCATC
                      ____________________________________________________________
consensus             TGTGCTCAAGAGACTAGGTGAACTAGAGGAGAAAGTAAATTCGATTCAAAGAAAGCCATC
 
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JMFN037I02-           TGAGATGCCATATGAAAAAGAGGAATTGTTAATGGCTGCTGTTTGT              
rJMSF022C09+          TGAGATGCCATATGAAAAAGAGGAATTGTTAATGGCTGCTGTTTGTAGAGTGGAAGCCTT
rJMFF050B06+          TGAGATGCCATATGAAAAAGAGGAATTGTTAATGGCTGCTGTTTGTAGAGTGGAAGCCTT
                      ____________________________________________________________
consensus             TGAGATGCCATATGAAAAAGAGGAATTGTTAATGGCTGCTGTTTGTAGAGTGGAAGCCTT
 
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rJMSF022C09+          AGAAGCCGAGCTAATTTCCACCAAGAAGGCTTTATTTCAAGCTTTGATGAGGCAAGAGGA
rJMFF050B06+          AGAAGCCGAGCTAATTTCCACCAAGAAGGCTTTATTTCAAGCTTTGATGAGGCAAGAGGA
                      ____________________________________________________________
consensus             AGAAGCCGAGCTAATTTCCACCAAGAAGGCTTTATTTCAAGCTTTGATGAGGCAAGAGGA
 
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rJMSF022C09+          GCTTCTTGCATATATTGACAGACAACAAGTAGCCAAACCCCGGGCACCAGGTTGCCGCAT
rJMFF050B06+          GCTTCTTGCATATATTGACAGACAACAAGTAGCCAAACCCCGGGCACCAGGTTGCCGCAT
                      ____________________________________________________________
consensus             GCTTCTTGCATATATTGACAGACAACAAGTAGCCAAACCCCGGGCACCAGGTTGCCGCAT
 
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rJMSF022C09+          ATTTTAGAAGTTGCAGATGCAGCAGGGAATCCCTAACACAAGCTTGGACTTTGCTTGTCT
rJMFF050B06+          ATTTTAGAAGTTGCAGATGCAGCAGGGAATCCCTAACACAAGCTTGAACTTTGCTTGTCT
                      ____________________________________________________________
consensus             ATTTTAGAAGTTGCAGATGCAGCAGGGAATCCCTAACACAAGCTTGGACTTTGCTTGTCT
 
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rJMSF022C09+          ATGCACTGCAGTTTTAAACAGTAAAAGAAGTCCCGCCTCTAAAGACTTTTGCTTTTGATT
rJMFF050B06+          ATGCACTGCAGTTTTAAACAGTAAAAGAAGTCCCGCCTCTAAAGACTTTTGCTTTTGATT
                      ____________________________________________________________
consensus             ATGCACTGCAGTTTTAAACAGTAAAAGAAGTCCCGCCTCTAAAGACTTTTGCTTTTGATT
 
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rJMSF022C09+          CATTTCAAATTTGTTTGTTCTTTTTTGTGTGTTCAGCAATCTTGGCTGATCATGCTGA-T
rJMFF050B06+          CATTTCAAATTTGTTTGTTCTTTTTTGTGTGTTCAGCAATCTTGGCTGATCATGCTGATT
                      ____________________________________________________________
consensus             CATTTCAAATTTGTTTGTTCTTTTTTGTGTGTTCAGCAATCTTGGCTGATCATGCTGATT
 
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rJMSF022C09+          TTTTTCTTTAAATAAACAAAAAACAAT                                 
rJMFF050B06+          TTTTTCTTTAAATAAACAAAAAACAATTTAAATTGTTTCGACATTTTATTTGGAATAATA
                      ____________________________________________________________
consensus             TTTTTCTTTAAATAAACAAAAAACAATTTAAATTGTTTCGACATTTTATTTGGAATAATA
 
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rJMFF050B06+          TCACACCATTGTGAAACAGAATGAACTAAATATGATTTACCATTATGGTTTGATTGTTAA
                      ____________________________________________________________
consensus             TCACACCATTGTGAAACAGAATGAACTAAATATGATTTACCATTATGGTTTGATTGTTAA
 
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rJMFF050B06+          TAAAAGTATCATCTCCCCTAATATATAAAGGTAAAAAAAAAAAAAAATAATTAAAAAAAC
                      ____________________________________________________________
consensus             TAAAAGTATCATCTCCCCTAATATATAAAGGTAAAAAAAAAAAAAAATAATTAAAAAAAC