Contig 001236:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF022K19+                                       CCAAAGCCTTGGCACCTAGCAAGAAAGGGTG
rJMFF050A17+                                                                  GGTG
                      ____________________________________________________________
consensus                                          CCAAAGCCTTGGCACCTAGCAAGAAAGGGTG
 
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rJMFF022K19+          GNTAGAGGGCCAAGATTTGGACAAGAACAATTTGGCACTTTTNTANTGGTTTTTGGCCAT
rJMFF050A17+          GCTAGAGGGCCAAGATTTGGACAAGAACAATTTGGCACTTTTCTACTGGTTCTTGGCCAT
                      ____________________________________________________________
consensus             GCTAGAGGGCCAAGATTTGGACAAGAACAATTTGGCACTTTTCTACTGGTTTTTGGCCAT
 
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rJMFF022K19+          TNTTAGCTGTTTCAACTTTGCAAACTATCTTTATTGGGCATTGTGGTACAAGTACAAACC
rJMFF050A17+          TCTTAGCTGTTTCAACTTTGCAAACTATCTTTATTGGGCATTGTGGTACAAGTACAAACC
                      ____________________________________________________________
consensus             TCTTAGCTGTTTCAACTTTGCAAACTATCTTTATTGGGCATTGTGGTACAAGTACAAACC
 
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rJMFF022K19+          CCAAAACAACCCAAACCCCAACCCAAACCCCAAACCCAAACCATCATCAGATCCAGATAC
rJMFF050A17+          CCAAAACAACCCAAACCCCAACCCAAACCCCAAACCCAAACCATCATCAGATCCAGATAC
rJMFF049M13+                       AACCCCAACCCAAACCCCAAACCCAAACCATCATCAGATCCAGATAC
                      ____________________________________________________________
consensus             CCAAAACAACCCAAACCCCAACCCAAACCCCAAACCCAAACCATCATCAGATCCAGATAC
 
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rJMFF022K19+          TTTGCCCAAATCACTNTNTTTAAGTAGGGTGCCATTCCTCAAGGCCTNTGGAGATAATGA
rJMFF050A17+          TTTGCCCAAATCACTCTCTCTAAGTAGGGTGCCATTCCTCAAGGCCTCTGGAGATAATGA
rJMFF049M13+          TTTGCCCAAATCACTCTCTCTAAGTAGGGTGCCATTCCTCAAGGCCTCTGGAGATAATGA
                      ____________________________________________________________
consensus             TTTGCCCAAATCACTCTCTCTAAGTAGGGTGCCATTCCTCAAGGCCTCTGGAGATAATGA
 
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rJMFF022K19+          TAATCCATNTCAAACTACGGTTAAATCGCTATNTACTCCCCAGTAATGGGAAAAGTTCAA
rJMFF050A17+          TAATCCATCTCAAACTACGGTTAAATCGCTATCTACTCCCCAGTAATGGGAAAAGTTCAA
rJMFF049M13+          TAATCCATCTCAAACTACGGTTAAATCGCTATCTACTCCCCAGTAATGGGAAAAGTTCAA
                      ____________________________________________________________
consensus             TAATCCATCTCAAACTACGGTTAAATCGCTATCTACTCCCCAGTAATGGGAAAAGTTCAA
 
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rJMFF022K19+          GAAAGCCCAACCAGCTTCAATTCGTTGTGCCAATAAAAGCCCATGNTATTTCGTGGGCCT
rJMFF050A17+          GAAAGCCCAACCAGCTTCAATTCGTTGTGCCAATAAAAGCCCATGCTATTTCGTGGGCCT
rJMFF049M13+          GAAAGCCCAACCAGCTTCAATTCGTTGTGCCAATAAAAGCCCATGCTATTTCGTGGGCCT
                      ____________________________________________________________
consensus             GAAAGCCCAACCAGCTTCAATTCGTTGTGCCAATAAAAGCCCATGCTATTTCGTGGGCCT
 
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rJMFF022K19+          AGTAATATATATATATATTAACATTTTTTTTTTGTTTTGCTTTTTGTTGAGTTCTTCTGG
rJMFF050A17+          AGTAATATATATATATATTAACATTTTTTTTTTGTTTTGCTTTTTGTTGAGTTCTTCTGG
rJMFF049M13+          AGTAATATATATATATATTAACATTTTTTTTTTGTTTTGCTTTTTGTTGAGTTCTTCTGG
                      ____________________________________________________________
consensus             AGTAATATATATATATATTAACATTTTTTTTTTGTTTTGCTTTTTGTTGAGTTCTTCTGG
 
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rJMFF022K19+          GGTTTGTGTGTTTGATCTGAAATTTTTTGAGGGAAGGTTTAATTTGATTATGTGTACTTA
rJMFF050A17+          GGTTTGTGTGTTTGATCTGAAATTTTTTGAGGGAAGGTTTAATTTGATTATTTGTACTTA
rJMFF049M13+          GGTTTGTGTGTTTGATCTGAAATTTTTTGAGGGAAGGTTTAATTTGATTATTTGTACTTA
                      ____________________________________________________________
consensus             GGTTTGTGTGTTTGATCTGAAATTTTTTGAGGGAAGGTTTAATTTGATTATTTGTACTTA
 
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rJMFF022K19+          GATGCATGCAATGTCTACTAGTATAAAATACGAAACAGATGTTTGTTTCATAAGTTGTAT
rJMFF050A17+          GATGCATGCAATGTCTACTAGTATAAAATACGAAACAGATGTTTGTTTCATAAGTTGTAT
rJMFF049M13+          GATGCATGCAATGTCTACTAGTATAAAATACGAAACAGATGTTTGTTTCATAAGTTGTAT
                      ____________________________________________________________
consensus             GATGCATGCAATGTCTACTAGTATAAAATACGAAACAGATGTTTGTTTCATAAGTTGTAT
 
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rJMFF022K19+          GTATAAGGTCGTTACATGTAAAATAT                                  
rJMFF050A17+          GTATAAGGTCGTTACATGTAAAATATTGAAGAATGTTTTCTAATGATACTAATTTCTTAC
rJMFF049M13+          GTATAAGGTCGTTACATGTAAAATATTGAAGAATGTTTTCTAATGATACTAATTTCTTAC
                      ____________________________________________________________
consensus             GTATAAGGTCGTTACATGTAAAATATTGAAGAATGTTTTCTAATGATACTAATTTCTTAC