Contig 001234:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049E23Sequence518008892 (2)emb|CAN71330.1|1e-11hypothetical protein VITISV_031551 [Vitis vinifera]458001234 (2)
JMFF051B02Sequence617008892 (2)emb|CAN71330.1|2e-11hypothetical protein VITISV_031551 [Vitis vinifera]493001234 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF051B02+ CATGCAGTTAAAA
                      ____________________________________________________________
consensus CATGCAGTTAAAA
 
. : . : . : . : . : . :
rJMFF051B02+ GATGGGTGCTCGGTGCACCTGGTGTGTTAAACTTGTGTTACAACTGTAAAACCTCTCTCG
rJMFF049E23+ TGTGTTAAACTTGTGTTACAACTGTAAAACCTCTCTCG
                      ____________________________________________________________
consensus GATGGGTGCTCGGTGCACCTGGTGTGTTAAACTTGTGTTACAACTGTAAAACCTCTCTCG
 
. : . : . : . : . : . :
rJMFF051B02+ AGCTCCAGGTTCCAGACCTTGAATAGATAATGTGCAGTTAAGGTTGTTCCTGGCACTCCC
rJMFF049E23+ AGCTCCAGGTTCCAGACCTTGAATAGATAATGTGCAGTTAAGGTTGTTCCTGGCACTCCC
                      ____________________________________________________________
consensus AGCTCCAGGTTCCAGACCTTGAATAGATAATGTGCAGTTAAGGTTGTTCCTGGCACTCCC
 
. : . : . : . : . : . :
rJMFF051B02+ CCCACCGTACCGTGTGTTAAACTTGTGTTTCAATATTAGAACCTTGAGCCCCAGATACCA
rJMFF049E23+ CCCACCGTACCGTGTGTTAAACTTGTGTTTCAATATTAGAACCTTGAGCCCCAGATACCA
                      ____________________________________________________________
consensus CCCACCGTACCGTGTGTTAAACTTGTGTTTCAATATTAGAACCTTGAGCCCCAGATACCA
 
. : . : . : . : . : . :
rJMFF051B02+ GATCTTGACCCTGCATATGGGCAAGACTTGTCTTTAGGCACTTATTGTGTGGTAATTTTA
rJMFF049E23+ GATCTTGACCCTGCATATGGGCAAGACTTGTCTTTAGGCACTTATTGTGTGGTAATTTTA
                      ____________________________________________________________
consensus GATCTTGACCCTGCATATGGGCAAGACTTGTCTTTAGGCACTTATTGTGTGGTAATTTTA
 
. : . : . : . : . : . :
rJMFF051B02+ TGCTTTTTTACTCAAGGATCATAATAAACTCAAAAATGTATATAATTTTATATGCTTTCC
rJMFF049E23+ TGCTTTTTTACTCAAGGATCATAATAAACTCAAAAATGTATATAATTTTATATGCTTTCC
                      ____________________________________________________________
consensus TGCTTTTTTACTCAAGGATCATAATAAACTCAAAAATGTATATAATTTTATATGCTTTCC
 
. : . : . : . : . : . :
rJMFF051B02+ ATATACTGGGGAAACGGTTGAAGCTATTCAGACACACTTTGGAGTTGTACCCTTTGATTT
rJMFF049E23+ ATATACTGGGGAAACGGTTGAAGCTATTCAGACACACTTTGGAGTTGTACCCTTTGATTT
                      ____________________________________________________________
consensus ATATACTGGGGAAACGGTTGAAGCTATTCAGACACACTTTGGAGTTGTACCCTTTGATTT
 
. : . : . : . : . : . :
rJMFF051B02+ GAATTTCTTCTTGTTTTGTGATATGTGGTTGATCAAATAACTGAATCTTCAGTTAGGCAG
rJMFF049E23+ GAATTTCTTCTTGTTTTGTGATATGTGGTTGATCAAATAACTGAATCTTCAGTTAGGCAG
                      ____________________________________________________________
consensus GAATTTCTTCTTGTTTTGTGATATGTGGTTGATCAAATAACTGAATCTTCAGTTAGGCAG
 
. : . : . : . : . : . :
rJMFF051B02+ GTAGACACTTGTAATATTGCTTTTACTCTTTTTCAGATTCATACTCCTAAACTTACTACC
rJMFF049E23+ GTAGACACTTGTAATATTGCTTTTACTCTTTTTCAGATTCATACTCCTAAACTTACTACC
                      ____________________________________________________________
consensus GTAGACACTTGTAATATTGCTTTTACTCTTTTTCAGATTCATACTCCTAAACTTACTACC