Contig 001233:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003C22Sequence222008093 (11)gb|ADZ29096.1|3e-181-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]724001233 (12)gb|ADZ29096.1|6e-1051-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMFF012N19Sequence659001233 (12)gb|ADZ29096.1|1e-651-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMFF025P04Sequence503008093 (11)gb|ADZ29096.1|4e-821-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]689001233 (12)gb|ADZ29096.1|1e-1081-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMFF035P15Sequence682001233 (12)gb|ADZ29096.1|4e-981-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMFF036O22Sequence581008093 (11)gb|ADZ29096.1|3e-1021-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]707001233 (12)gb|ADZ29096.1|4e-1011-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMFF049B14Sequence618008093 (11)gb|ADZ29096.1|7e-1101-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]627001233 (12)gb|AFK38815.1|2e-47unknown [Lotus japonicus]
JMFF049C07Sequence481008093 (11)gb|ADZ29096.1|5e-801-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]409001233 (12)
JMSF009J18Sequence382008093 (11)gb|ADZ29096.1|3e-401-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]687001233 (12)gb|ADZ29096.1|4e-1061-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMSF016A08Sequence421008093 (11)gb|ADZ29096.1|7e-691-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]745001233 (12)gb|ADZ29096.1|8e-1191-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMSF026P17Sequence664008093 (11)gb|ADZ29096.1|3e-1281-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]741001233 (12)gb|ADZ29096.1|2e-1171-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMSF041M18Sequence815008093 (11)gb|ADZ29096.1|4e-1591-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]790001233 (12)gb|ADZ29096.1|1e-1401-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]
JMSF050N11Sequence652008093 (11)gb|ADZ29096.1|2e-1161-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]770001233 (12)gb|ADZ29096.1|7e-1201-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase [Ipomoea batatas]

Alignment

This contig is upended


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rJMSF041M18+                                              GCAGAGGCAACATATGTTTGTGAT
                      ____________________________________________________________
consensus                                                 GCAGAGGCAACATATGTTTGTGAT
 
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rJMSF041M18+          TACATTCTTGGGGGTCAGCTTGATGGCTCTAGCTCAACCAAAGAGGCGTTTCTGGAGAAA
rJMSF016A08+                                                               GGAGAAA
rJMSF026P17+                                                                 AGAAN
rJMSF050N11+                                                                 AGAAA
                      ____________________________________________________________
consensus             TACATTCTTGGGGGTCAGCTTGATGGCTCTAGCTCAACCAAAGAGGCGTTTCTGGAGAAA
 
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rJMSF041M18+          TTTAAGTATGCAGTTTCCAAAGGTTTTGATCCGGACTCTGATCTCACTAAAGTTGGTATT
rJMSF016A08+          TTTAAGTATGCAGTTTCTAAAGGTTTTGATCCGGACTCTGATCTCACTNAAGTTGGTATT
rJMSF026P17+          TTTAAGTATGCAGTTTCCAAAGGTTTTGATCCGGACTCTGATCTCACTNAAGTTGGTATT
rJMFF025P04+                                                  ATCTCACTAAAGTTGGTATT
rJMSF009J18+                                                              TTGGTATT
rJMSF050N11+          TTTAAGTATGCAGTTTCCAAAGGTTTTGATCCGGACTCTGATCTCACTAAAGTTGGTATT
rJMFF003C22+                                                                 GTATT
                      ____________________________________________________________
consensus             TTTAAGTATGCAGTTTCCAAAGGTTTTGATCCGGACTCTGATCTCACTAAAGTTGGTATT
 
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rJMSF041M18+          GCTAACCAAACAACAATGTTGAAAGGAGAAACTGAAGAGATGGGCAAGTTAGTTGAGAGG
rJMSF016A08+          GCTAACCAAACAACAATGTTGAAAGGAGAAACTGAAGAGATGGGCAAGTTAGTTGAGAGG
rJMSF026P17+          GCTAACCAAACAACAATGTTGAAAGGNGAANCTGAAGAGATGGGCAAGTTAGTTGAGAGG
rJMFF025P04+          GCTAACCAAACAACAATGTTGAAAGGAGAAACTGAAGAGATGGGCAAGTTAGTTGAGAGG
rJMSF009J18+          GCTAACCAAACAACAATGTTGAAAGGAGAAACTGAAGAGATGGGCAAGTTAGTTGAGAGG
rJMSF050N11+          GCTAACCAAACAACAATGTTGAAAGGAGAAACTGAAGAGATGGGCAAGTTAGTTGAGAGG
rJMFF036O22+                      ACAATGTTGAAAGGAGAAACTGAAGAGATGGGCAAGTTAGTTGAGAGG
rJMFF035P15+                                  GGAGAAACTGAAGAGATGGGCAAGTTAGTTGAGAGG
rJMFF003C22+          GCTAACCAAACAACAATGTTGAAAGGAGAAACTGAAGAGATGGGCAAGTTAGTTGAGAGG
                      ____________________________________________________________
consensus             GCTAACCAAACAACAATGTTGAAAGGAGAAACTGAAGAGATGGGCAAGTTAGTTGAGAGG
 
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rJMSF041M18+          ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
rJMSF016A08+          ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
rJMSF026P17+          ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
rJMFF025P04+          ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
rJMSF009J18+          ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
rJMSF050N11+          ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
rJMFF036O22+          ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
rJMFF035P15+          ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
rJMFF003C22+          ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
rJMFF012N19+                     CAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
                      ____________________________________________________________
consensus             ACTATGATGCGCAAATATGGAGTGGAAAATGTCAATAATCACTTCATAAGTTTCAACACT
 
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rJMSF041M18+          ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
rJMSF016A08+          ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
rJMSF026P17+          ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
rJMFF025P04+          ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
rJMSF009J18+          ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
rJMSF050N11+          ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
rJMFF036O22+          ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
rJMFF035P15+          ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
rJMFF003C22+          ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
rJMFF012N19+          ATTTGTGATGCAACTCAAGAGCGGCAAGATNGCCATGTATAAGCTGGTTGAGGAGCAGCT
                      ____________________________________________________________
consensus             ATTTGTGATGCAACTCAAGAGCGGCAAGAT-GCCATGTATAAGCTGGTTGAGGAGCAGCT
 
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rJMSF041M18+          GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMSF016A08+          GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMSF026P17+          GGATCTTATGTTGGTGATTGGNGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMFF025P04+          GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMSF009J18+          GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMSF050N11+          GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMFF036O22+          GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMFF035P15+          GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMFF003C22+          GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMFF012N19+          GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
rJMFF049B14+                                          CAAGCAACACTTCACACCTACAGGAGAT
                      ____________________________________________________________
consensus             GGATCTTATGTTGGTGATTGGTGGATGGAACTCAAGCAACACTTCACACCTACAGGAGAT
 
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rJMSF041M18+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
rJMSF016A08+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGC
rJMSF026P17+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACNCTGAGCAGAGAGTAGGTCCNGG
rJMFF025P04+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
rJMSF009J18+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
rJMSF050N11+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
rJMFF036O22+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
rJMFF035P15+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
rJMFF003C22+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
rJMFF012N19+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
rJMFF049B14+          TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
                      ____________________________________________________________
consensus             TGCAGAGGAACGTGGGATTCCATCATATTGGATTGACACTGAGCAGAGAGTAGGTCCTGG
 
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rJMSF041M18+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMSF016A08+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMSF026P17+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMFF025P04+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMSF009J18+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMSF050N11+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMFF036O22+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMFF035P15+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMFF003C22+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMFF012N19+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
rJMFF049B14+          AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
                      ____________________________________________________________
consensus             AAACAAAATAAGTTACAAGCTAATGCATGGTGAGTTAGTTGAGAAGGAGAACTTTCTACC
 
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rJMSF041M18+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMSF016A08+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMSF026P17+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMFF025P04+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMSF009J18+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMSF050N11+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMFF036O22+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMFF035P15+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMFF003C22+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMFF012N19+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
rJMFF049B14+          AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
                      ____________________________________________________________
consensus             AAAAGGCCCCATTACGATTGGGGTAACATCTGGTGCATCCACTCCTGATAAGGTTGTTGA
 
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rJMSF041M18+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMSF016A08+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMSF026P17+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMFF025P04+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMSF009J18+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMSF050N11+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMFF036O22+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMFF035P15+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMFF003C22+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMFF012N19+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMFF049C07+                    GTCAGGGTGTNTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
rJMFF049B14+          AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCAGAGTGTCGTAGA
                      ____________________________________________________________
consensus             AGATGTCCTTGTCAGGGTGTTTGATATAAAGCGCGAGGAAGCCCTGCA-AATATCTTAGA
 
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rJMSF041M18+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMSF016A08+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMSF026P17+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMFF025P04+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMSF009J18+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMSF050N11+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMFF036O22+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMFF035P15+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMFF003C22+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMFF012N19+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMFF049C07+          CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
rJMFF049B14+          CTCATTTACACTTTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
                      ____________________________________________________________
consensus             CTCATTTACACTCTGAGACATGAGCATGTTGCTTTACATTCATTACCAAAGGTTTAGGGC
 
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rJMSF041M18+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMSF016A08+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMSF026P17+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTANGCATGGAGTATATATATACACAGG
rJMFF025P04+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMSF009J18+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMSF050N11+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMFF036O22+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMFF035P15+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMFF003C22+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMFF012N19+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMFF049C07+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
rJMFF049B14+          TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
                      ____________________________________________________________
consensus             TTTAGGCTGGGAGTATATGTAATGTAATTGCTCTATGCATGGAGTATATATATACACAGG
 
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rJMSF041M18+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCT                 
rJMSF016A08+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
rJMSF026P17+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAANGCCCTTAAAGAATACTCCCAAG
rJMFF025P04+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
rJMSF009J18+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
rJMSF050N11+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
rJMFF036O22+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
rJMFF035P15+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
rJMFF003C22+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
rJMFF012N19+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
rJMFF049C07+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
rJMFF049B14+          GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
                      ____________________________________________________________
consensus             GTAGTTGAGTGGATAATAGGCCTTTGTATTGATTTAATGCCCTTAAAGAATACTCCCAAG
 
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rJMSF016A08+          AGTATATGCAATGT                                              
rJMSF026P17+          AGTATATGCAATGT                                              
rJMFF025P04+          AGTATATGCAA                                                 
rJMSF009J18+          AGTATATGCAATGTTCCTCCA                                       
rJMSF050N11+          AGTATATGCAATGTTCCTCCAGTAACAAATTTCCAGAT                      
rJMFF036O22+          AGTATATGCAATGTTCCTCCAGTAACAAATTTCCAGATTGCACATTATTCAATTAAAAAC
rJMFF035P15+          AGTATATGCAATGTTCCTCCAGTAACAAATTTCCAGATTGCACATTAT            
rJMFF003C22+          AGTATATGCAATGTTCCTCCAGTAACAAATTTCCAGATTGCACATTATTCAATTAAAAAC
rJMFF012N19+          AGTATATGCAATGTTCCTCCAGTAACAAATTTCCAGATTGCACATTATTCAATTAAAAAC
rJMFF049C07+          AGTATATGCAATGTTCCTCCAGTAACAAATTTCCAGATTGCACATTATTCAATTAAAAAC
rJMFF049B14+          AGTATATGCAATGTTCCTCCAGTAACAAATTTCCAGATTGCACATTATTCAATTAAAAAC
                      ____________________________________________________________
consensus             AGTATATGCAATGTTCCTCCAGTAACAAATTTCCAGATTGCACATTATTCAATTAAAAAC
 
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rJMFF036O22+          T                                                           
rJMFF003C22+          T                                                           
rJMFF012N19+          TTAAAACCTCT                                                 
rJMFF049C07+          TTAAAACCTCTTGCAAACTCTAATGCTAGAAATTTCTGCTTACAGTTTCCTTTTTCTAAG
rJMFF049B14+          TTAAAACCTCTTGCAAACTCTAATGCTAGAAATTTCTGCTTACAGTTTCCTTTTTCTAAG
                      ____________________________________________________________
consensus             TTAAAACCTCTTGCAAACTCTAATGCTAGAAATTTCTGCTTACAGTTTCCTTTTTCTAAG
 
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rJMFF049C07+          CAATTCAAAAAAAAAAAACAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
rJMFF049B14+          CAATTCAAAAAAAAAAAAC-AAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             CAATTCAAAAAAAAAAAACAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG