Contig 001232:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014N24Sequence548009397 (3)794001232 (3)ref|XP_009601118.1|5e-94PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Nicotiana
JMFF049B01Sequence647009397 (3)635001232 (3)ref|XP_002528658.1|7e-24conserved hypothetical protein [Ricinus communis] gb|EEF33724.1| conserved hypot
JMSF029L18Sequence688009397 (3)ref|XP_009601118.1|6e-06PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Nicotiana 745001232 (3)ref|XP_009601118.1|1e-79PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Nicotiana

Alignment

This contig is upended


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rJMFF014N24+                                                                TGCTGC
                      ____________________________________________________________
consensus                                                                   TGCTGC
 
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rJMFF014N24+          ATAATTCCAAGGGTCTCCCTATCAGACTGGGTGAAGTTGATTGCCCTTTCTACTTAAAAA
                      ____________________________________________________________
consensus             ATAATTCCAAGGGTCTCCCTATCAGACTGGGTGAAGTTGATTGCCCTTTCTACTTAAAAA
 
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rJMFF014N24+          CTGGAAGCTGTAAGTATGGAGCCACTTGCCGCTACAATCATCCAGACAGATATACAATCA
                      ____________________________________________________________
consensus             CTGGAAGCTGTAAGTATGGAGCCACTTGCCGCTACAATCATCCAGACAGATATACAATCA
 
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rJMFF014N24+          ATCCACCTGCAGCACATCTTAATGTTGGGGTTGTTAATCCAACTGCCTCACTTTTTCAAA
rJMSF029L18+               CCTGCAGCACATCTTAATGTTGGGGTTGTTAATCCAACTGCCTCACTTTTTCAAA
                      ____________________________________________________________
consensus             ATCCACCTGCAGCACATCTTAATGTTGGGGTTGTTAATCCAACTGCCTCACTTTTTCAAA
 
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rJMFF014N24+          CATTTGACCCTAGATTGACTCAAACAATGTTTGGATTTGCCACAACTATCTACCCACAAC
rJMSF029L18+          CATTTGACCCTAGATTGACTCAAACAATGTTTGGATTTGCCACAACTATCTACCCACAAC
                      ____________________________________________________________
consensus             CATTTGACCCTAGATTGACTCAAACAATGTTTGGATTTGCCACAACTATCTACCCACAAC
 
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rJMFF014N24+          GGCCTGGACAGGTTGAATGTGATTTCTACATGAAAACTGGGGAGTGCAAATTTGGAGAGA
rJMSF029L18+          GGCCTGGACAGGTTGAATGTGATTTCTACATGAAAACTGGGGAGTGCAAATTTGGAGAGA
                      ____________________________________________________________
consensus             GGCCTGGACAGGTTGAATGTGATTTCTACATGAAAACTGGGGAGTGCAAATTTGGAGAGA
 
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rJMFF014N24+          GATGCAGGTTTCACCACCCTCTTGATCATTCATTATCTGTTACATCCTCAATGGAAGGCG
rJMSF029L18+          GATGCAGGTTTCACCACCCTCTTGATCATTCATTATCTGTTACATCCTCAATGGAAGGCG
rJMFF049B01+                                                GTTACATCCTCAATGGAAGGCG
                      ____________________________________________________________
consensus             GATGCAGGTTTCACCACCCTCTTGATCATTCATTATCTGTTACATCCTCAATGGAAGGCG
 
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rJMFF014N24+          AGCAGCAAAATTTTAAGCTCAGTCTTGCAGGGCTACCTAGACGTGAGGGTGCTATACATT
rJMSF029L18+          AGCAGCAAAATTTTAAGCTCAGTCTTGCAGGGCTACCTAGACGTGAGGGTGCTATACATT
rJMFF049B01+          AGCAGCAAAATTTTAAGCTCAGTCTTGCAGGGCTACCTAGACGTGAGGGTGCTATACATT
                      ____________________________________________________________
consensus             AGCAGCAAAATTTTAAGCTCAGTCTTGCAGGGCTACCTAGACGTGAGGGTGCTATACATT
 
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rJMFF014N24+          GTCCGTATTATATGAAAACTGGAATATGCAAGTTTGGAGCAACTTGCAAATTTGATCATC
rJMSF029L18+          GTCCGTATTATATGAAAACTGGAATATGCAAGTTTGGAGCAACTTGCAAATTTGATCATC
rJMFF049B01+          GTCCGTATTATATGAAAACTGGAATATGCAAGTTTGGAGCAACTTGCAAATTTGATCATC
                      ____________________________________________________________
consensus             GTCCGTATTATATGAAAACTGGAATATGCAAGTTTGGAGCAACTTGCAAATTTGATCATC
 
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rJMFF014N24+          CGCCACCAGGGGAGTTAATAGGTGGTACTTCACAGGTAACTTCTACATCTGTTGGTGAAG
rJMSF029L18+          CGCCACCAGGGGAGTTAATAGGTGGTACTTCACAGGTAACTTCTACATCTGTTGGTGAAG
rJMFF049B01+          CGCCACCAGGGGAGTTAATAGGTGGTACTTCACAGGTAACTTCTACATCTGTTGGTGAAG
                      ____________________________________________________________
consensus             CGCCACCAGGGGAGTTAATAGGTGGTACTTCACAGGTAACTTCTACATCTGTTGGTGAAG
 
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rJMFF014N24+          AGGAAGGATATGCGAAATTGGTTGAAGCCATTCAGAAACAGCAGCAATAAACATTTTGTT
rJMSF029L18+          AGGAAGGATATGCGAAATTGGTTGAAGCCATTCAGAAACAGCAGCAATAAACATTTTGTT
rJMFF049B01+          AGGAAGGATATGCGAAATTGGTTGAAGCCATTCAGAAACAGCAGCAATAAACATTTTGTT
                      ____________________________________________________________
consensus             AGGAAGGATATGCGAAATTGGTTGAAGCCATTCAGAAACAGCAGCAATAAACATTTTGTT
 
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rJMFF014N24+          CTGTTCAGCAGAGGATTTGATCCGCTACCTCTTCTAGCCCTGACTACACTCTGAGGGAAC
rJMSF029L18+          CTGTTCAGCAGAGGATTTGATCCGCTACCTCTTCTAGCCCTGACTACACTCTGAGGGAAC
rJMFF049B01+          CTGTTCAGCAGAGGATTTGATCCGCTACCTCTTCTAGCCCTGACTACACTCTGAGGGAAC
                      ____________________________________________________________
consensus             CTGTTCAGCAGAGGATTTGATCCGCTACCTCTTCTAGCCCTGACTACACTCTGAGGGAAC
 
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rJMFF014N24+          TAATAATTGTTTCAGATTTGGTTGATGAGTTATTATATTTTATTTTCAAATTCTGAAGTT
rJMSF029L18+          TAATAATTGTTTCAGATTTGGTTGATGAGTTATTATATTTTATTTTCAAATTCTGAAGTT
rJMFF049B01+          TAATAATTGTTTCAGATTTGGTTGATGAGTTATTATATTTTATTTTCAAATTCTGAAGTT
                      ____________________________________________________________
consensus             TAATAATTGTTTCAGATTTGGTTGATGAGTTATTATATTTTATTTTCAAATTCTGAAGTT
 
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rJMFF014N24+          GGATTGCCTATGTTGTATTCCTTGTAACTGGCGGAGAATAGTAGCTAGCTT         
rJMSF029L18+          GGATTGCCTATGTTGTATTCCTTGTAACTGGCGGAGAATAGTAGCTAGCTTTGAAATGCG
rJMFF049B01+          GGATTGCCTATGTTGTATTCCTTGTAACTGGCGGAGAATAGTAGCTAGCTTTGAAATGCG
                      ____________________________________________________________
consensus             GGATTGCCTATGTTGTATTCCTTGTAACTGGCGGAGAATAGTAGCTAGCTTTGAAATGCG
 
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rJMSF029L18+          TTTATATAGTTGGTGTT                                           
rJMFF049B01+          TTTATATAGTTGGTGTTATGTCTTTTCTAGTGGACGGAGCTCTATAATGATTTGCTACTC
                      ____________________________________________________________
consensus             TTTATATAGTTGGTGTTATGTCTTTTCTAGTGGACGGAGCTCTATAATGATTTGCTACTC
 
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rJMFF049B01+          TTCACTGTGTTTTGACGTTGGTGTGCAGGATGATGACGATTGTGCTATTTTTTTATTTGG
                      ____________________________________________________________
consensus             TTCACTGTGTTTTGACGTTGGTGTGCAGGATGATGACGATTGTGCTATTTTTTTATTTGG
 
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rJMFF049B01+          GAAAATGGTAAAATAATCAAATGATTAAATGGGAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             GAAAATGGTAAAATAATCAAATGATTAAATGGGAAAAAAAAAAAAAAAACTCTCCAGGGT