Contig 001231:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015C24Sequence580002425 (8)ref|XP_011469507.1|1e-84PREDICTED: cinnamoyl-CoA reductase 1-like [Fragaria vesca subsp. vesca]764001231 (10)ref|XP_006345416.1|9e-57PREDICTED: cinnamoyl-CoA reductase 1-like [Solanum tuberosum]
JMFF016A07Sequence565002425 (8)ref|XP_011469507.1|3e-83PREDICTED: cinnamoyl-CoA reductase 1-like [Fragaria vesca subsp. vesca]712001231 (10)ref|XP_009611351.1|9e-70PREDICTED: cinnamoyl-CoA reductase 1-like [Nicotiana tomentosiformis]
JMFF046J11Sequence556002425 (8)ref|XP_011469507.1|9e-82PREDICTED: cinnamoyl-CoA reductase 1-like [Fragaria vesca subsp. vesca]446001231 (10)emb|CBI32940.3|5e-20unnamed protein product [Vitis vinifera]
JMFF049A17Sequence457002425 (8)gb|EYU27030.1|4e-64hypothetical protein MIMGU_mgv1a020119mg, partial [Erythranthe guttata]451001231 (10)emb|CBI32940.3|9e-21unnamed protein product [Vitis vinifera]
JMSF006A18Sequence251001231 (10)gb|EYU34232.1|2e-28hypothetical protein MIMGU_mgv1a0266902mg, partial [Erythranthe guttata]457004277 (4)ref|XP_004136966.1|2e-04PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-spec
JMSF016D11Sequence495002425 (8)ref|XP_011469507.1|8e-52PREDICTED: cinnamoyl-CoA reductase 1-like [Fragaria vesca subsp. vesca]771001231 (10)ref|XP_006345416.1|2e-86PREDICTED: cinnamoyl-CoA reductase 1-like [Solanum tuberosum]
JMSF029E08Sequence672001231 (10)ref|XP_010323594.1|3e-99PREDICTED: alcohol dehydrogenase-like isoform X1 [Solanum lycopersicum]788001231 (10)ref|XP_006345416.1|4e-93PREDICTED: cinnamoyl-CoA reductase 1-like [Solanum tuberosum]
JMSF038M03Sequence635007993 (2)ref|XP_008231478.1|4e-19PREDICTED: cinnamoyl-CoA reductase 1-like [Prunus mume]758001231 (10)ref|XP_009611351.1|1e-66PREDICTED: cinnamoyl-CoA reductase 1-like [Nicotiana tomentosiformis]
JMSF044N02Sequence721002425 (8)ref|XP_010323594.1|1e-106PREDICTED: alcohol dehydrogenase-like isoform X1 [Solanum lycopersicum]702001231 (10)ref|XP_009611351.1|1e-76PREDICTED: cinnamoyl-CoA reductase 1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF006A18-                                               GAGGCATGCAGGCTATTGAATTTA
                      ____________________________________________________________
consensus                                                 GAGGCATGCAGGCTATTGAATTTA
 
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JMSF006A18-           ATTTGGAAATCTGAAGAAGAAGAAAAATATGAGCGGAGAGGAGAAGACAGTATGTGTGAC
JMSF029E08-                                                            GTATGCGTGAC
                      ____________________________________________________________
consensus             ATTTGGAAATCTGAAGAAGAAGAAAAATATGAGCGGAGAGGAGAAGACAGTATGTGTGAC
 
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JMSF006A18-           TGGTGCCTCCGGCTTCATAGCTTCTTGGCTCGTCAAGCTTCTGCTCCACCGCGGTTACAC
JMSF029E08-           CGGTGCTTCCGGCTTCATAGCTTCTTGGCTCGTCAAGCTTTTGCTCCACCGTGGTTACAC
                      ____________________________________________________________
consensus             TGGTGCTTCCGGCTTCATAGCTTCTTGGCTCGTCAAGCTTTTGCTCCACCGTGGTTACAC
 
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JMSF006A18-           CGTCCACGCCACCGTTCGCAACCTCAAGGATCCAAATAAGGTGGCACATCTTCTTGCGTT
JMSF029E08-           CGTCCACGCCACCGTTCGCAGCCTCAAGGATCCAAATAAGGTGTCACATCTTCTTGCATT
                      ____________________________________________________________
consensus             CGTCCACGCCACCGTTCGCAGCCTCAAGGATCCAAATAAGGTGTCACATCTTCTTGCGTT
 
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JMSF006A18-           GGAAGGTGCCAAGGAAAGGTTGCATTTGTTTGAAGCCGACTT                  
JMSF029E08-           AGATGGTGCCAAGGAAAGACTGCATTTGTTTGAAGCCGATTTACTTGATGAAAACTCATT
                      ____________________________________________________________
consensus             GGATGGTGCCAAGGAAAGGTTGCATTTGTTTGAAGCCGATTTACTTGATGAAAACTCATT
 
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JMSF029E08-           TGATGATGCAATTAATGGGTGTGAAGGTGTTTTCCACACAGCATCACCTGTTTCACCATT
                      ____________________________________________________________
consensus             TGATGATGCAATTAATGGGTGTGAAGGTGTTTTCCACACAGCATCACCTGTTTCACCATT
 
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JMSF029E08-           TGCAACTAAGGGAGAACTAGTGGATCCTGCAGTAAAGGGGACACTTAATGTTCTTGGATC
rJMSF029E08+          TGCAACTAAGGGAGAACTAGTGGATCCTGCAGTAAAGGGGACACTTAATGTTCTTGGATC
rJMSF016D11+                                                                TGAATC
                      ____________________________________________________________
consensus             TGCAACTAAGGGAGAACTAGTGGATCCTGCAGTAAAGGGGACACTTAATGTTCTTGGATC
 
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JMSF029E08-           ATGTGTAAGAACACCTTCTGTGAAAAGGGTAGTGGTGACATCTTCAACGGCTTCAGTTAT
rJMSF029E08+          ATGTGTAAGAACACCTTCTGTGAAAAGGGTAGTGGTGACATCTTCAACGGCTTCAGTTAT
rJMSF016D11+          ATGTGTGAGAACACCTTCTGTGNAAAGAATAGTGCTGACGTCCTCAACGGCAACCATTAT
rJMFF015C24+                          TCTGTGAAAAGAATAGTGCTGACGTCCTCAACGGCAACCATTAT
                      ____________________________________________________________
consensus             ATGTGTAAGAACACCTTCTGTGAAAAGGGTAGTGGTGACATCTTCAACGGCTTCAGTTAT
 
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JMSF029E08-           GTACAAATCAAATCCTATAAGTGCAACTGATGTAATCGACGAGAATTGGTTTTCTGATAA
rJMSF029E08+          GTACAAATCAAATCCTATAAGTGCAACTGATGTAATCGACGAGAATTGGTTTTCTGATAA
rJMSF016D11+          GTACAAACCAAATCCTATAAGTCCAACTGACGTAATCGATGACACTTGGTTTTCTGATAA
rJMSF044N02+          GTACAAACCAAATCCTATAAGTCCAACTGACGTAATCGATGACACTTGGTTTTCTGATAA
rJMFF015C24+          GTACAAACCAAATCCTATAAGTCCAACTGACGTAATCGATGACACTTGGTTTTCTGATAA
rJMFF016A07+                                                                  ATAA
                      ____________________________________________________________
consensus             GTACAAATCAAATCCTATAAGTGCAACTGATGTAATCGATGAGACTTGGTTTTCTGATAA
 
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JMSF029E08-           AGAATTTGCAGAGGAAACAAAGCAATGGTATATTTTGTCTAAAGTCCTTGCCGAGGAAGC
rJMSF029E08+          AGAATTTGCAGAGGAAACAAAGCAATGGTATATTTTGTCTAAAGTCCTTGCCGAGGAAGC
rJMSF016D11+          AGAATTTGCAGAGGAAACAAAGCAATGGTATATCTTGTCTAAAGTCTTTGCTGAGGAAGC
rJMSF038M03+                              AGCAATGGTATATCTTGTCTAAAGTCTTTGCTGAGGAAGC
rJMSF044N02+          AGAATTTGCAGAGGAAACAAAGCAATGGTATATCTTGTCTAAAGTCTTTGCTGAGGAAGC
rJMFF015C24+          AGAATTTGCAGAGGAAACAAAGCAATGGTATATCTTGTCTAAAGTCTTTGCTGAGGAAGC
rJMFF016A07+          AGAATTTGCAGAGGAAACAAAGCAATGGTATATCTTGTCTAAAGTCTTTGCTGAGGAAGC
                      ____________________________________________________________
consensus             AGAATTTGCAGAGGAAACAAAGCAATGGTATATCTTGTCTAAAGTCTTTGCTGAGGAAGC
 
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JMSF029E08-           AGCATGGAAATACGCAGGGGAGAATATGATTGACATGGTTTCACTTCATCCTTGTCTTGT
rJMSF029E08+          AGCATGGAAATACGCAGGGGAGAATATGATTGACATGGTTTCACTTCATCCTTGTCTTGT
rJMSF016D11+          AGCATGGAAATATGCTGGGGAGAATAGGATCGACATGGTTTCACTGCACCCTGCTCTTGT
rJMSF038M03+          AGCATGGAAATATGCTGGGGAGAATAGGATCGACATGGTTTCACTGCACCCTGCTCTTGT
rJMSF044N02+          AGCATGGAAATATGCTGGGGAGAATAGGATCGACATGGTTTCACTGCACCCTGCTCTTGT
rJMFF015C24+          AGCATGGAAATATGCTGGGGAGAATAGGATCGACATGGTTTCACTGCACCCTGCTCTTGT
rJMFF016A07+          AGCATGGAAATATGCTGGGGAGAATAGGATCGACATGGTTTCACTGCACCCTGCTCTTGT
                      ____________________________________________________________
consensus             AGCATGGAAATATGCTGGGGAGAATAGGATCGACATGGTTTCACTGCACCCTGCTCTTGT
 
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JMSF029E08-           TATAGGCCCTCTTTTACAACCAATTCTTAATTTTTCAAGTGAACTGATTCTGGACACC  
rJMSF029E08+          TATAGGCCCTCTTTTACAACCAATTCTTAATTTTTCAAGTGAACTGATTCTGGACACCAT
rJMSF016D11+          TATTGGCCCTCTTTTACAACCAATTCTTAATTTTTCAAGTGAGATGATTCTGGACACCAT
rJMSF038M03+          TATTGGCCCTCTTTTACAACCAATTCTTAATTTTTCAAGTGAGATGATTCTGGACACCAT
rJMSF044N02+          TATTGGCCCTCTTTTACAACCAATTCTTAATTTTTCAAGTGAGATGATTCTGGACACCAT
rJMFF015C24+          TATTGGCCCTCTTTTACAACCAATTCTTAATTTTTCAAGTGAGATGATTCTGGACACCAT
rJMFF016A07+          TATTGGCCCTCTTTTACAACCAATTCTTAATTTTTCAAGTGAGATGATTCTGGACACCAT
                      ____________________________________________________________
consensus             TATTGGCCCTCTTTTACAACCAATTCTTAATTTTTCAAGTGAGATGATTCTGGACACCAT
 
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rJMSF029E08+          AAAAGAAGGAAAGGATTTCATGTTTTCTCCAGTCATGAATTGTTGTGTTGATGTTAGAGA
rJMSF016D11+          AAAAGAAGGAAGGGAGTTCATGTCTTCCCCATTC---AATTGCTATGTTGATGTTAGAGA
rJMSF038M03+          AAAAGAAGGAAGGGAGTTCATGTCTTCCCCATTC---AATTGCTATGTTGATGTTAGAGA
rJMSF044N02+          AAAAGAAGGAAGGGAGTTCATGTCTTCCCCATTC---AATTGCTATGTTGATGTTAGAGA
rJMFF015C24+          AAAAGAAGGAAGGGAGTTCATGTCTTCCCCATTC---AATTGCTATGTTGATGTTAGAGA
rJMFF016A07+          AAAAGAAGGAAGGGAGTTCATGTCTTCCCCATTC---AATTGCTATGTTGATGTTAGAGA
                      ____________________________________________________________
consensus             AAAAGAAGGAAGGGAGTTCATGTCTTCCCCATTC---AATTGCTATGTTGATGTTAGAGA
 
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rJMSF029E08+          CGTCGCAAATGCACATATCCGAGCATTTGAGGTACCTTCCGCCAGTGGAAGATACTGTTT
rJMSF016D11+          CGTCGCAAATGCACATATCGAAGCATTTGAGGTACCTTCTGCCAGTGGAAGATACTGTTT
rJMSF038M03+          CGTCGCAAATGCACATATCGAAGCATTTGAGGTACCTTCTGCCAGTGGAAGATACTGTTT
rJMSF044N02+          CGTCGCAAATGCACATATCGAAGCATTTGAGGTACCTTCTGCCAGTGGAAGATACTGTTT
rJMFF015C24+          CGTCGCAAATGCACATATCGAAGCATTTGAGGTACCTTCTGCCAGTGGAAGATACTGTTT
rJMFF016A07+          CGTCGCAAATGCACATATCGAAGCATTTGAGGTACCTTCTGCCAGTGGAAGATACTGTTT
                      ____________________________________________________________
consensus             CGTCGCAAATGCACATATCGAAGCATTTGAGGTACCTTCTGCCAGTGGAAGATACTGTTT
 
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rJMSF029E08+          GGTTGGGGAAACAGTGCACTTTTCTCAGGTTTTGAAGATTGTTGGCCAACTTTATCCCTC
rJMSF016D11+          GGTTGGGGAAACAATGCAGACTTCTGAGGTTTTGAAGATTGTTAGCCAGCTTTATCCCTC
rJMSF038M03+          GGTTGGGGAAACAATGCAGACTTCTGAGGTTTTGAAGATTGTTAGCCAGCTTTATCCCTC
rJMSF044N02+          GGTTGGGGAAACAATGCAGACTTCTGAGGTTTTGAAGATTGTTAGCCAGCTTTATCCCTC
rJMFF015C24+          GGTTGGGGAAACAATGCAGACTTCTGAGG-TTTGAAGATTGTTAGCCAGCTTTATCCCTC
rJMFF016A07+          GGTTGGGGAAACAATGCAGACTTCTGAGGTTTTGAAGATTGTTAGCCAGCTTTATCCCTC
rJMFF046J11+                                        TTTGAAGATTGTTAGCCAGCTTTATCCCTC
rJMFF049A17+                                   GAGGTTTTGAAGATTGTTAGCCAGCTTTATCCCTC
                      ____________________________________________________________
consensus             GGTTGGGGAAACAATGCAGACTTCTGAGGTTTTGAAGATTGTTAGCCAGCTTTATCCCTC
 
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rJMSF029E08+          TCTTGTCATTCCTGCAGAGAAATCTAAAGGAGACTTGCCTATAGTGCCACCATTCAAAGT
rJMSF016D11+          TCTTCCCATTCC---CGAGAAATATAAAGGAGACTTGCCTATAATGCCAACATTCAAAGT
rJMSF038M03+          TCTTCCCATTCC---CGAGAAATATAAAGGAGACTTGCCTATAATGCCAACATTCAAAGT
rJMSF044N02+          TCTTCCCATTCC---CGAGAAATATAAAGGAGACTTGCCTATAATGCCAACATTCAAAGT
rJMFF015C24+          TCTTCCCATTCC---CGAGAAATATAAAGGAGACTTGCCTATAATGCCAACATTCAAAGT
rJMFF016A07+          TCTTCCCATTCC---CGAGAAATATAAAGGAGACTTGCCTATAATGCCAACATTCAAAGT
rJMFF046J11+          TCTTCCCATTCC---CGAGAAATATAAAGGAGACTTGCCTATAATGCCAACATTCAAAGT
rJMFF049A17+          TCTTCCCATTCC---CGAGAAATATAAAGGAGACTTGCCTATAATGCCAACATTCAAAGT
                      ____________________________________________________________
consensus             TCTTCCCATTCC---CGAGAAATATAAAGGAGACTTGCCTATAATGCCAACATTCAAAGT
 
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rJMSF029E08+          ATCCCAGGACAAGGCCAAAAGCTTGGGTATCAACTTCACTTCTTTAGAAGTGAGCCTTAA
rJMSF016D11+          ATCCCAAGACAAGGCAAAAAGCTTGGGTATCAACTTCACTCCTTTAGAAGTGAGCCTTAA
rJMSF038M03+          ATCCCAAGACAAGGCAAAAAGCTTGGGTATCAACTTCACTCCTTTAGAAGTGAGCCTTAA
rJMSF044N02+          ATCCCAAGACAAGGCAAAAAGCTTGGGTATCAACTTCACTCCTTTAGAAGTGAGCCTTAA
rJMFF015C24+          ATCCCAAGACAAGGCAAAAAGCTTGGGTATCAACTTCACTCCTTTAGAAGTGAGCCTTAA
rJMFF016A07+          ATCCCAAGACAAGGCAAAAAGCTTGGGTATCAACTTCACTCCTTTAGAAGTGAGCCTTAA
rJMFF046J11+          ATCCCAAGACAAGGCAAAAAGCTTGGGTATCAACTTCACTCCTTTAGAAGTGAGCCTTAA
rJMFF049A17+          ATCCCAAGACAAGGCAAAAAGCTTGGGTATCAACTTCACTCCTTTAGAAGTGAGCCTTAA
                      ____________________________________________________________
consensus             ATCCCAAGACAAGGCAAAAAGCTTGGGTATCAACTTCACTCCTTTAGAAGTGAGCCTTAA
 
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rJMSF029E08+          GGATACTATTGAAAGTTTAAAGGAGAAAAACTTCTTGAGCTTCTAGTTTTTA        
rJMSF016D11+          GGATACTATTGAAAGTTTAAAGGAGAAAAACTTCTTGAGCTTCTAGTTTTTACTTTGATT
rJMSF038M03+          GGATACTATTGAAAGTTTAAAGGAGAAAAACTTCTTGAGCTTCTAGTTTTTACTTTGATT
rJMSF044N02+          GGATACTATTGAAAGTTTAAAGGAGAAAAACTTCTTGAGCTTCTAGTTTTTACTTTGATT
rJMFF015C24+          GGATACTATTGAAAGTTTAAAGGAGAAAAACTTCTTGAGCTTCTAGTTTTTACTTTGATT
rJMFF016A07+          GGATACTATTGAAAGTTTAAAGGAGAAAAACTTCTTGAGCTTCTAGTTTTTACTTTGATT
rJMFF046J11+          GGATACTATTGAAAGTTTAAAGGAGAAAAACTTCTTGAGCTTCTAGTTTTTACTTTGATT
rJMFF049A17+          GGATACTATTGAAAGTTTAAAGGAGAAAAACTTCTTGAGCTTCTAGTTTTTACTTTGATT
                      ____________________________________________________________
consensus             GGATACTATTGAAAGTTTAAAGGAGAAAAACTTCTTGAGCTTCTAGTTTTTACTTTGATT
 
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rJMSF016D11+          TGTCATGAAGCTCTGAAAACTATGAGCATAAAAGTTGTAAGGGAATGTCTTAGCTTTCCA
rJMSF038M03+          TGTCATGAAGCTCTGAAAACTATGAGCATAAAAGTTGTAAGGGAATGTCTTAGCTTTCCA
rJMSF044N02+          TGTCATGAAGCTCTGAAAACTATGAGCATAAAAGTTGTAAGGGAATGTCTTAGCTTTCCA
rJMFF015C24+          TGTCATGAAGCTCTGAAAACTATGAGCATAAAAGTTGTAAGGGAATGTCTTAGCTTTCCA
rJMFF016A07+          TGTCATGAAGCTCTGAAAACTATGAGCATAAAAGTTGTAAGGGAATGTCTTAGCTTTCCA
rJMFF046J11+          TGTCATGAAGCTCTGAAAACTATGAGCATAAAAGTTGTAAGGGAATGTCTTAGCTTTCCA
rJMFF049A17+          TGTCATGAAGCTCTGAAAACTATGAGCATAAAAGTTGTAAGGGAATGTCTTAGCTTTCCA
                      ____________________________________________________________
consensus             TGTCATGAAGCTCTGAAAACTATGAGCATAAAAGTTGTAAGGGAATGTCTTAGCTTTCCA
 
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rJMSF016D11+          TTGACTATTGAACCACTTTCAA                                      
rJMSF038M03+          TTGACTATTGAACCACTTTCAAACAGTGGTAACTGATTGCTACGTACT            
rJMSF044N02+          TTGACTATTGAACCACTTTCAAACAGTGGTAACTGATTGCTACGTACT            
rJMFF015C24+          TTGACTATTGAACCACTTTC-AACAGTGGTAACTGATTGCTACGTACTGTTCCTTCTTTC
rJMFF016A07+          TTGACTATTGAACCACTTTC-AACAGTGGTAACTGATTGCTACGTACTGTTCCTTCTTTC
rJMFF046J11+          TTGACTATTGAACCACTTTC-AACAGTGGTAACTGATTGCTACGTACTGTTCCTTCTTTC
rJMFF049A17+          TTGACTATTGAACCACTTTC-AACAGTGGTAACTGATTGCTACGTACTGTTCCTTCTTTC
                      ____________________________________________________________
consensus             TTGACTATTGAACCACTTTC-AACAGTGGTAACTGATTGCTACGTACTGTTCCTTCTTTC
 
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rJMFF015C24+          CTCGGATT                                                    
rJMFF016A07+          CTCGGATTGTTAAATAAAATTGTTTACTCCATCGTAACAAAAATAATGTAAACAT     
rJMFF046J11+          CTCGGATTGTTAAATAAAATTGTTTACTCCATCGTAACAAAAATAATGTAAACATTGAAT
rJMFF049A17+          CTCGGATTGTTAAATAAAATTGTTTACTCCATCGTAACAAAAATAATGTAAACATTGAAT
                      ____________________________________________________________
consensus             CTCGGATTGTTAAATAAAATTGTTTACTCCATCGTAACAAAAATAATGTAAACATTGAAT
 
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rJMFF046J11+          GTTTTTATTCCATCGTAACATATAAGAAGATTAGAAAAAAAAAAAAAAACTCTCCAGGGT
rJMFF049A17+          GTTTTTATTCCATCGTAACATATAAGAAGATTAGAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             GTTTTTATTCCATCGTAACATATAAGAAGATTAGAAAAAAAAAAAAAAACTCTCCAGGGT