Contig 001230:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015E16Sequence617001792 (2)ref|XP_006343941.1|1e-36PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM717001230 (2)ref|XP_010259181.1|1e-70PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM
JMFF049A14Sequence641001792 (2)ref|XP_006343941.1|6e-43PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM156001230 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+                                                        TGCGGGGTTAGGAG
                      ____________________________________________________________
consensus                                                           TGCGGGGTTAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          TTGCTGCCGCTGCTGCATATGCTGTTTTTAAGGAACTTATATTTGAGCCAAAAGAGTACA
                      ____________________________________________________________
consensus             TTGCTGCCGCTGCTGCATATGCTGTTTTTAAGGAACTTATATTTGAGCCAAAAGAGTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          AAATTTTTGGGAAGGCTCTCGATAGGATTCAACATGACAGCCAGGTTAGGGTGAGAATTG
                      ____________________________________________________________
consensus             AAATTTTTGGGAAGGCTCTCGATAGGATTCAACATGACAGCCAGGTTAGGGTGAGAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          GATCCCCTATTACTGGGTATGGATCAGAAAGTAGGAACCGTGCAGCTCGCCAACGCATTC
                      ____________________________________________________________
consensus             GATCCCCTATTACTGGGTATGGATCAGAAAGTAGGAACCGTGCAGCTCGCCAACGCATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          CAAACAGAATATGGACTGATGAGGATGGGGTTGAACACGTTGAGGTCAATTTCTATATTC
                      ____________________________________________________________
consensus             CAAACAGAATATGGACTGATGAGGATGGGGTTGAACACGTTGAGGTCAATTTCTATATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          GGGGACCACATGGAGCTGGCAAAGTTTTTGCAGAGATGTTCCAAGACAAAGAAGAGAAGC
                      ____________________________________________________________
consensus             GGGGACCACATGGAGCTGGCAAAGTTTTTGCAGAGATGTTCCAAGACAAAGAAGAGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          AGTGGAAGTTCACCTATTTGATCGTTCAGATCAACTCACCTTCCCCGGCACAACTGATGC
                      ____________________________________________________________
consensus             AGTGGAAGTTCACCTATTTGATCGTTCAGATCAACTCACCTTCCCCGGCACAACTGATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          TCGAGTCTTATGTCCCAGCCTGAATAAAAACCGCTAAATGTCTTGCTGCATTCTGTCTCT
                      ____________________________________________________________
consensus             TCGAGTCTTATGTCCCAGCCTGAATAAAAACCGCTAAATGTCTTGCTGCATTCTGTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          GACACCCTTCAATCACACAAATAGTTCTCCAATTTTTTACTTACCAAGATGTGATCAAGG
                      ____________________________________________________________
consensus             GACACCCTTCAATCACACAAATAGTTCTCCAATTTTTTACTTACCAAGATGTGATCAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          ACAAATTCTTGAATGGGGTGTGTTTTCTGATTTTGATGGGATGCAACAATTGGTATCAAC
                      ____________________________________________________________
consensus             ACAAATTCTTGAATGGGGTGTGTTTTCTGATTTTGATGGGATGCAACAATTGGTATCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          CCCACAGTCTGCTGTTATTCATTTTTCATGCCAGCCATGGTGTTGAAATAGGCATGCTGT
rJMFF049A14+                                  TTCATGCCAGCCATGGTGTTGAAATAGGCATGCTGT
                      ____________________________________________________________
consensus             CCCACAGTCTGCTGTTATTCATTTTTCATGCCAGCCATGGTGTTGAAATAGGCATGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          CACCTTACATCTTTGTTTTTTGATATTTTCAAAGCTCATGTAATGCATGGTGCATTGACA
rJMFF049A14+          CCCCTTACATCTTTGTTTTTTGATATTTTCAAAGCTCATGTAATGCATGGTGCATTGACA
                      ____________________________________________________________
consensus             CCCCTTACATCTTTGTTTTTTGATATTTTCAAAGCTCATGTAATGCATGGTGCATTGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015E16+          ATGGGATAGGAGTTTATTCTTACATGTTTCTTGATATAAAATG                 
rJMFF049A14+          ATGGGATAGGAGTTTATTCTTACATGTTTCTTGATATAAAATGCAATGCAACTTGAAGTT
                      ____________________________________________________________
consensus             ATGGGATAGGAGTTTATTCTTACATGTTTCTTGATATAAAATGCAATGCAACTTGAAGTT