Contig 001229:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030H12Sequence449013177 (4)ref|XP_004250900.1|1e-07PREDICTED: F-box protein At2g32560 isoform X2 [Solanum lycopersicum]722001229 (3)ref|XP_009590639.1|2e-80PREDICTED: F-box protein At2g32560 [Nicotiana tomentosiformis]
JMFF041L22Sequence650013177 (4)ref|XP_010313246.1|6e-30PREDICTED: F-box protein At2g32560 isoform X1 [Solanum lycopersicum]605001229 (3)ref|XP_009590639.1|2e-49PREDICTED: F-box protein At2g32560 [Nicotiana tomentosiformis]
JMFF048N15Sequence355013177 (4)283001229 (3)

Alignment

This contig is upended


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rJMFF030H12+                                       TCCGCCCCATGGAAGAAGGGCGGCTGCAATA
                      ____________________________________________________________
consensus                                          TCCGCCCCATGGAAGAAGGGCGGCTGCAATA
 
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rJMFF030H12+          GAGAAAGGCGTGACTTGGGATAGATTAAGAGCTCCCCCTATCGACACCTCTCCGCATTAT
                      ____________________________________________________________
consensus             GAGAAAGGCGTGACTTGGGATAGATTAAGAGCTCCCCCTATCGACACCTCTCCGCATTAT
 
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rJMFF030H12+          CTTCATATCTCTCTTTGCTTGAATGAATTGCGACCCGGAGATCACATCGAGATCCAATGG
rJMFF041L22+                                                               CCAATGG
                      ____________________________________________________________
consensus             CTTCATATCTCTCTTTGCTTGAATGAATTGCGACCCGGAGATCACATCGAGATCCAATGG
 
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rJMFF030H12+          AGGAGAAACAAAGAATTCCCTTATGGCTGGTGGTATGGCGTGGTTGGCCACTTGGAAACG
rJMFF041L22+          AGGAGAAACAAAGAATTCCCTTATGGCTGGTGGTATGGCGTGGTTGGCCACTTGGAAACG
                      ____________________________________________________________
consensus             AGGAGAAACAAAGAATTCCCTTATGGCTGGTGGTATGGCGTGGTTGGCCACTTGGAAACG
 
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rJMFF030H12+          TGCGATAGGAACCAGATTTACTGCCGTTGTCATGAAAGTGACACTGTGGTGCTGGAGTTT
rJMFF041L22+          TGCGATAGGAACCAGATTTACTGCCGTTGTCATGAAAGTGACACTGTGGTGCTGGAGTTT
                      ____________________________________________________________
consensus             TGCGATAGGAACCAGATTTACTGCCGTTGTCATGAAAGTGACACTGTGGTGCTGGAGTTT
 
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rJMFF030H12+          AACCAGTACAGTCCTGGTTCGCGGTGGAGGACAAAGATGATTAGCAGAGGAGAACATCGG
rJMFF041L22+          AACCAGTACAGTCCTGGTTCGCGGTGGAGGACAAAGATGATTAGCAGAGGAGAACATCGG
                      ____________________________________________________________
consensus             AACCAGTACAGTCCTGGTTCGCGGTGGAGGACAAAGATGATTAGCAGAGGAGAACATCGG
 
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rJMFF030H12+          GAGGAAGGAAACGAGGGCGATGGGTTCTATGGAGGAATACGCAAACTTGACAGCAACGCC
rJMFF041L22+          GAGGAAGGAAACGAGGGCGATGGGTTCTATGGAGGAATACGCAAACTTGACAGCAACGCC
                      ____________________________________________________________
consensus             GAGGAAGGAAACGAGGGCGATGGGTTCTATGGAGGAATACGCAAACTTGACAGCAACGCC
 
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rJMFF030H12+          GAAATTTCTATGTGGAGGCAGCACTGGCCTGCTGATATGTTGGAATAGATGATTTTGCAG
rJMFF041L22+          GAAATTTCTATGTGGAGGCAGCACTGGCCTGCTGATATGTTGGAATAGATGATTTTGCAG
                      ____________________________________________________________
consensus             GAAATTTCTATGTGGAGGCAGCACTGGCCTGCTGATATGTTGGAATAGATGATTTTGCAG
 
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rJMFF030H12+          AAAGAATGAGTTTATGCAGTTTGGCAGATCAGAACAGTTTTGAATGGTCTAAAACAGAAG
rJMFF041L22+          AAAGAATGAGTTTATGCAGTTTGGCAGATCAGAACAGTTTTGAATGGTCTAAAACAGAAG
rJMFF048N15+                           AGTTTGGCAGATCAGAACAGTTTTGAATGGTCTAAAACAGAAG
                      ____________________________________________________________
consensus             AAAGAATGAGTTTATGCAGTTTGGCAGATCAGAACAGTTTTGAATGGTCTAAAACAGAAG
 
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rJMFF030H12+          GAAGTATGAAGAAGAAGAAGGCCAGAAGGGTGTTTTGGCAATGCCACAAGTTGCCTTTCT
rJMFF041L22+          GAAGTATGAAGAAGAAGAAGGCCAGAAGGGTGTTTTGGCAATGCCACAAGTTGCCTTTCT
rJMFF048N15+          GAAGTATGAAGAAGAAGAAGGCCAGAAGGGTGTTTTGGCAATGCCACAAGTTGCCTTTCT
                      ____________________________________________________________
consensus             GAAGTATGAAGAAGAAGAAGGCCAGAAGGGTGTTTTGGCAATGCCACAAGTTGCCTTTCT
 
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rJMFF030H12+          CCACAGATCTTAGTGGTTATTGAACAATTTATTACTCATTAATTGTTTCC-ACTTTATAC
rJMFF041L22+          CCACAGATCTTAGTGGTTATTGAACAATTTATTACTCATTAATTGTTTCC-ACTTTATAC
rJMFF048N15+          CCACAGATCTTAGTGGTTATTGAACAATGTATTACTCATTATTTGTTTCCTACTTTATAC
                      ____________________________________________________________
consensus             CCACAGATCTTAGTGGTTATTGAACAATTTATTACTCATTAATTGTTTCC-ACTTTATAC
 
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rJMFF030H12+          ATAATTTGTTCAGTAGATGTTCTTAGCTCCCTTCAGTTCCTCTTGTAGAGACTTTGAAGC
rJMFF041L22+          ATAATTTGTTCAGTAGATGTTCTTAGCTCCCTTCAGTTCCTCTTGTAGAGACTTTGAAGC
rJMFF048N15+          ATAATTTGTTCAGTAGATGTTCTTAGCTCCCTTCAGTTCCTCTTGTAGAGACTTTGAAGC
                      ____________________________________________________________
consensus             ATAATTTGTTCAGTAGATGTTCTTAGCTCCCTTCAGTTCCTCTTGTAGAGACTTTGAAGC
 
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rJMFF030H12+          AATAGATTTTTGAACCTTTCCTCTTACC                                
rJMFF041L22+          AATAGATTTTTGAACCTTTCCTCTTACC                                
rJMFF048N15+          AATAGATTTTTGAACCTTTCCTCTTACCNAGTTTAGGTATTCTTTTAATAATCTTTACAC
                      ____________________________________________________________
consensus             AATAGATTTTTGAACCTTTCCTCTTACCNAGTTTAGGTATTCTTTTAATAATCTTTACAC