Contig 001225:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024C04Sequence529012193 (4)emb|CDP10503.1|7e-53unnamed protein product [Coffea canephora]774001225 (4)gb|EYU34935.1|1e-80hypothetical protein MIMGU_mgv1a004458mg [Erythranthe guttata]
JMFF048D18Sequence443012193 (4)emb|CDP10503.1|5e-47unnamed protein product [Coffea canephora]462001225 (4)gb|EYU34935.1|9e-37hypothetical protein MIMGU_mgv1a004458mg [Erythranthe guttata]
JMSF049M24Sequence650012193 (4)emb|CDP10503.1|1e-72unnamed protein product [Coffea canephora]745001225 (4)gb|EYU34935.1|2e-79hypothetical protein MIMGU_mgv1a004458mg [Erythranthe guttata]
JMSF050M24Sequence599012193 (4)emb|CDP10503.1|4e-65unnamed protein product [Coffea canephora]665001225 (4)gb|EYU34935.1|9e-74hypothetical protein MIMGU_mgv1a004458mg [Erythranthe guttata]

Alignment

This contig is upended


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rJMSF049M24+                                  AAACACAGCNTGCTGGAGCAAGCATATGCTTGTAAG
rJMFF024C04+           AAACAAGTACAAAATGATACCCAAAACACAGCTTGCTGGAGCAAGCATATGCTTGTAAG
                      ____________________________________________________________
consensus              AAACAAGTACAAAATGATACCCAAAACACAGCTTGCTGGAGCAAGCATATGCTTGTAAG
 
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rJMSF049M24+          CTCTTCTGGCTTCCTGATAATTTTTATGAAAAAGTAGAAGAAGGGAGCCTCATTCTTAAG
rJMSF050M24+                        TGATAATTTTTATGAAAAAGTAGAAGAAGGGAGCCTCATTCTTAAG
rJMFF024C04+          CTCTTCTGGCTTCCTGATAATTTTTATGAAAAAGTAGAAGAAGGGAGCCTCATTCTTAAG
                      ____________________________________________________________
consensus             CTCTTCTGGCTTCCTGATAATTTTTATGAAAAAGTAGAAGAAGGGAGCCTCATTCTTAAG
 
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rJMSF049M24+          CAATCCAACAACCTCAGTTTCTGCAAACAAGGCCTACTTCTTGATTCAGATCAATCTGAG
rJMSF050M24+          CAATCCAACAACCTCAGTTTCTGCAAACAAGGCCTACTTCTTGATTCAGATCAATCTGAG
rJMFF024C04+          CAATCCAACAACCTCAGTTTCTGCAAACAAGGCCTACTTCTTGATTCAGATCAATCTGAG
                      ____________________________________________________________
consensus             CAATCCAACAACCTCAGTTTCTGCAAACAAGGCCTACTTCTTGATTCAGATCAATCTGAG
 
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rJMSF049M24+          CCTATAAAGGCTGACCTTGTCATTCTTGCCACCGGATATAAAAGCCAAGAAAAGCTCAGA
rJMSF050M24+          CCTATAAAGGCTGACCTTGTCATTCTTGCCACCGGATATAAAAGCCAAGAAAAGCTCAGA
rJMFF024C04+          CCTATAAAGGCTGACCTTGTCATTCTTGCCACCGGATATAAAAGCCAAGAAAAGCTCAGA
                      ____________________________________________________________
consensus             CCTATAAAGGCTGACCTTGTCATTCTTGCCACCGGATATAAAAGCCAAGAAAAGCTCAGA
 
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rJMSF049M24+          AATCTTTTCACCTCTAAAACCTTTCAGAACTACATCATCAGCCCCACTTCCTCACTACTT
rJMSF050M24+          AATCTTTTCACCTCTAAAACCTTTCAGAACTACATCATCAGCCCCACTTCCTCACTACTT
rJMFF024C04+          AATCTTTTCACCTCTAAAACCTTTCAGAACTACATCATCAGCCCCACTTCCTCACTACTT
                      ____________________________________________________________
consensus             AATCTTTTCACCTCTAAAACCTTTCAGAACTACATCATCAGCCCCACTTCCTCACTACTT
 
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rJMSF049M24+          GCTCTATACAGGCAAATGATTCCTCCGCGGATTCCTGGGATAGCAATAATAGGGCATTCA
rJMSF050M24+          GCTCTATACAGGCAAATGATTCCTCCGCGGATTCCTGGGATAGCAATAATAGGGCATTCA
rJMFF024C04+          GCTCTATACAGGCAAATGATTCCTCCGCGGATTCCTGGGATAGCAATAATAGGGCATTCA
                      ____________________________________________________________
consensus             GCTCTATACAGGCAAATGATTCCTCCGCGGATTCCTGGGATAGCAATAATAGGGCATTCA
 
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rJMSF049M24+          GAGAGTTTTGCAAACCTTTATACCTTTGATGTGAGATGCCAATGGCTGGCACATTTTCTT
rJMSF050M24+          GAGAGTTTTGCAAACCTTTATACCTTTGATGTGAGATGCCAATGGCTGGCACATTTTCTT
rJMFF024C04+          GAGAGTTTTGCAAACCTTTATACCTTTGATGTGAGATGCCAATGGCTGGCACATTTTCTT
rJMFF048D18+                            TATACCTTTGATGTGAGATGCCAATGGCTGGCACATTTTCTT
                      ____________________________________________________________
consensus             GAGAGTTTTGCAAACCTTTATACCTTTGATGTGAGATGCCAATGGCTGGCACATTTTCTT
 
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rJMSF049M24+          GATGAGAAATTGAAGATGCCAAGCATAAAGGAGATGGAGAAGGATGTTGAGGAGTGGGAA
rJMSF050M24+          GATGAGAAATTGAAGATGCCAAGCATAAAGGAGATGGAGAAGGATGTTGAGGAGTGGGAA
rJMFF024C04+          GATGAGAAATTGAAGATGCCAAGCATAAAGGAGATGGAGAAGGATGTTGAGGAGTGGGAA
rJMFF048D18+          GATGAGAAATTGAAGATGCCAAGCATAAAGGAGATGGAGAAGGATGTTGAGGAGTGGGAA
                      ____________________________________________________________
consensus             GATGAGAAATTGAAGATGCCAAGCATAAAGGAGATGGAGAAGGATGTTGAGGAGTGGGAA
 
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rJMSF049M24+          AAATACATGAGAAAATACTCAGGGGAGGTTTACAGAGGGCCATGCATTGGGGGTCTGCAT
rJMSF050M24+          AAATACATGAGAAAATACTCAGGGGAGGTTTACAGAGGGCCATGCATTGGGGGTCTGCAT
rJMFF024C04+          AAATACATGAGAAAATACTCAGGGGAGGTTTACAGAGGGCCATGCATTGGGGGTCTGCAT
rJMFF048D18+          AAATACATGAGAAAATACTCAGGGGAGGTTTACAGAGGGCCATGCATTGGGGGTCTGCAT
                      ____________________________________________________________
consensus             AAATACATGAGAAAATACTCAGGGGAGGTTTACAGAGGGCCATGCATTGGGGGTCTGCAT
 
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rJMSF049M24+          ATATGGTATAATGATCAGCTGTGCAGAGATGTTGGGTGCAACCCAAGAAGAAACAAGGGG
rJMSF050M24+          ATATGGTATAATGATCAGCTGTGCAGAGATGTTGGGTGCAACCCAAGAAGAAACAAGGGG
rJMFF024C04+          ATATGGTATAATGATCAGCTGTGCAGAGATGTTGGGTGCAACCCAAGAAGAAACAAGGGG
rJMFF048D18+          ATACTGTATAATGATCAGCTGTGCAGAGATGTTGGGTGCAACCCAAGAAGAAACAAGGGG
                      ____________________________________________________________
consensus             ATATGGTATAATGATCAGCTGTGCAGAGATGTTGGGTGCAACCCAAGAAGAAACAAGGGG
 
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rJMSF049M24+          TGGCTATTGGACTTGGTACACCCCTATGCTCCACCAGACTATGTTGCATTTGCTACTACT
rJMSF050M24+          TGGCTATTGGACTTGGTACACCCCTATGCTCCACCAGACTATGTTGCATTTGCTACTACT
rJMFF024C04+          TGGCTATTGGACTTGGTACACCCCTATGCTCCACCAGACTATGTTGCATTTGCTACTACT
rJMFF048D18+          TGGCTATTGGACTTGGTACACCCCTATGCTCCACCAGACTATGTTGCATTTGCTACTACT
                      ____________________________________________________________
consensus             TGGCTATTGGACTTGGTACACCCCTATGCTCCACCAGACTATGTTGCATTTGCTACTACT
 
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rJMSF049M24+          CCAAAATAATTTTAGTTTAATTTAATTTAATTTAATTTGTTGGATCTGTAATAAGGGGGA
rJMSF050M24+          CCAAAATAATTTTAGTTTAATTTAATTTAATTTAATTTGTTGGATCTGTAATAAGGGGGA
rJMFF024C04+          CCAAAATAATTTTAGTTTAATTTAATTTAATTTAATTTGTTGGATCTGTAATAAGGGGGA
rJMFF048D18+          CCAAAATAATTTTAGTTTAATTTAATTTAATTTAATTTGTTGGATCTGTAATAAGGGGGA
                      ____________________________________________________________
consensus             CCAAAATAATTTTAGTTTAATTTAATTTAATTTAATTTGTTGGATCTGTAATAAGGGGGA
 
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rJMSF049M24+          TTAATTGCCATGTCATGCCTACAAGCATGCATGT                          
rJMSF050M24+          TTAATTGCCATGTCATGCC                                         
rJMFF024C04+          TTAATTGCCATGTCATGCCTACAAGCATGCATGTTGTTGTTGACCCTTAAGAA       
rJMFF048D18+          TTAATTGCCATGTCATGCCTACAAGCATGCATGTTGTTGTTGACCCTTAAGAATAATTTA
                      ____________________________________________________________
consensus             TTAATTGCCATGTCATGCCTACAAGCATGCATGTTGTTGTTGACCCTTAAGAATAATTTA
 
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rJMFF048D18+          TTTACTTGTCATTCTAGTAAAAAAAAAAAAAAAACTCTCCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             TTTACTTGTCATTCTAGTAAAAAAAAAAAAAAAACTCTCCCAGGGTGATCCGCCATAAGG