Contig 001221:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-                                                              TCCGCCGGA
                      ____________________________________________________________
consensus                                                                TCCGCCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           CGGTTTACTCCACACGCTTTGCGGAACGCCGGCCTACGTCGCGCCGGAGATTCTGTCGAA
                      ____________________________________________________________
consensus             CGGTTTACTCCACACGCTTTGCGGAACGCCGGCCTACGTCGCGCCGGAGATTCTGTCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           GAAAGGCTACGACGGAGCCAAAGTCGACGTCTGGTCGTGTGGAGTCATCCTCTACGTTCT
                      ____________________________________________________________
consensus             GAAAGGCTACGACGGAGCCAAAGTCGACGTCTGGTCGTGTGGAGTCATCCTCTACGTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           CACCGCCGGATTCCTGCCGTTCAACGATCCGAATTTGATGGTGATGTATAAGAAGATTTA
                      ____________________________________________________________
consensus             CACCGCCGGATTCCTGCCGTTCAACGATCCGAATTTGATGGTGATGTATAAGAAGATTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           CAAGGGCGAGTTCCGGTACCCTAAATGGATGTCGCCGGATCTCAAACGCCTTTTATCTCG
                      ____________________________________________________________
consensus             CAAGGGCGAGTTCCGGTACCCTAAATGGATGTCGCCGGATCTCAAACGCCTTTTATCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           AATTCTCGACACCAATCCGGAGACGAGGATCACCATCGACGAGATCATCGAAGATCCGTG
                      ____________________________________________________________
consensus             AATTCTCGACACCAATCCGGAGACGAGGATCACCATCGACGAGATCATCGAAGATCCGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           GTTCCGGAAAGGATCCAAAGGAAAGCTGAAATTCTACGACGAATTCCTGCAAGTCAACAA
rJMFF047J11+              CGGAAAGGATCCAAAGGAAAGCTGAAATTCTACGACGAATTCCTGCAAGTCAACAA
                      ____________________________________________________________
consensus             GTTCCGGAAAGGATCCAAAGGAAAGCTGAAATTCTACGACGAATTCCTGCAAGTCAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           GGAAGAAGGTCCGAGCCCTAGCAGCGCGTCCTGTTTAAACGCCTTCAACCTAATATCCTT
rJMFF047J11+          GGAAGAAGGTCCGAGCCCTAGCAGCGCGTCCTGTTTAAACGCCTTCAACCTAATATCCTT
                      ____________________________________________________________
consensus             GGAAGAAGGTCCGAGCCCTAGCAGCGCGTCCTGTTTAAACGCCTTCAACCTAATATCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           CTCCTCCGGGCTGGACCTATCCGGATTGTTCGACGGCGCGTCAAGCTCCGTCACCGACTC
rJMFF047J11+          CTCCTCCGGGCTGGACCTATCCGGATTGTTCGACGGCGCGTCAAGCTCCGTCACCGACTC
                      ____________________________________________________________
consensus             CTCCTCCGGGCTGGACCTATCCGGATTGTTCGACGGCGCGTCAAGCTCCGTCACCGACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           CGAGAGAATAGTGGTGGAGTCGGCGCCGGAGAAAGTGATGGAGCGAGTCGAGAGATTCGC
rJMFF047J11+          CGAGAGAATAGTGGTGGAGTCGGCGCCGGAGAAAGTGATGGAGCGAGTCGAGAGATTCGC
                      ____________________________________________________________
consensus             CGAGAGAATAGTGGTGGAGTCGGCGCCGGAGAAAGTGATGGAGCGAGTCGAGAGATTCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           TGCGGCGGAGAAGATCAGACTGAGGAAAAGGAAGGAATTGNGAATCGATCTGGAAGGGCA
rJMFF047J11+          TGCGGCGGAGAAGATCAGACTGAGGAAAAGGAAGGAATTGGGAATCGATCTGGAAGGGCA
                      ____________________________________________________________
consensus             TGCGGCGGAGAAGATCAGACTGAGGAAAAGGAAGGAATTGGGAATCGATCTGGAAGGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016N04-           GAATGGGAAATTCATCG                                           
rJMFF047J11+          GAATGGGAAATTCATCGCCAGCTTGGAGGTTTATCGTTTGAACGATCGTATGGTCGTGGT
                      ____________________________________________________________
consensus             GAATGGGAAATTCATCGCCAGCTTGGAGGTTTATCGTTTGAACGATCGTATGGTCGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF047J11+          GGAAGGCAAAAGGACGGCCGGCGACCCCGAAATGTTCAGAGAGTCATGGAGGGAAAAGAT
                      ____________________________________________________________
consensus             GGAAGGCAAAAGGACGGCCGGCGACCCCGAAATGTTCAGAGAGTCATGGAGGGAAAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF047J11+          TAAGCCGGCGATTTTAAGCCGATCGGAGAATCAGGTTTCCGGTAGCTGCTAGACTACTTC
                      ____________________________________________________________
consensus             TAAGCCGGCGATTTTAAGCCGATCGGAGAATCAGGTTTCCGGTAGCTGCTAGACTACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF047J11+          ACCGCCGCCGGCGGGATCTAGAACAACGTTCGTACTTACGGACATTAAATTATCATTACA
                      ____________________________________________________________
consensus             ACCGCCGCCGGCGGGATCTAGAACAACGTTCGTACTTACGGACATTAAATTATCATTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF047J11+          TTATTATGATTATTATATTATATGTATAAAAAATATTTCTATTAATTATTATTTGATCAT
                      ____________________________________________________________
consensus             TTATTATGATTATTATATTATATGTATAAAAAATATTTCTATTAATTATTATTTGATCAT