Contig 001220:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047H18Sequence602010319 (3)ref|XP_009777886.1|4e-12PREDICTED: probable plastidic glucose transporter 3 [Nicotiana sylvestris] ref|588001220 (3)
JMSF004D19Sequence297022016170001220 (3)
JMSF030E21Sequence651010319 (3)632001220 (3)ref|XP_008353709.1|1e-42PREDICTED: probable plastidic glucose transporter 2 [Malus domestica]

Alignment

This contig is upended


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rJMSF030E21+             CTGGGCCAGTACCTAGTCTTCTCCTGTCAGAGATATTCCCTGGGCGGATTAGGGCAA
                      ____________________________________________________________
consensus                CTGGGCCAGTACCTAGTCTTCTCCTGTCAGAGATATTCCCTGGGCGGATTAGGGCAA
 
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rJMSF030E21+          AGGCAATGGCTATCTGCATGGCTGTGCATTGGGTCATAAATTTTTTCGTTGGTCTTTTGT
                      ____________________________________________________________
consensus             AGGCAATGGCTATCTGCATGGCTGTGCATTGGGTCATAAATTTTTTCGTTGGTCTTTTGT
 
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rJMSF030E21+          TTCTCCGTATGCTAGAACAACTTGGGCCGCAAGTTGTGTATACAACGTTTGCCTCATTTT
                      ____________________________________________________________
consensus             TTCTCCGTATGCTAGAACAACTTGGGCCGCAAGTTGTGTATACAACGTTTGCCTCATTTT
 
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rJMSF030E21+          GCTTGATAGCAGTGGTCTTTGTGCGGAAGAATGTGGTGGAAACGAAGGGGAAAACACTTC
                      ____________________________________________________________
consensus             GCTTGATAGCAGTGGTCTTTGTGCGGAAGAATGTGGTGGAAACGAAGGGGAAAACACTTC
 
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rJMSF030E21+          AAGAAATCGAGTTTGCCCTCGTCCTGTCTCATTAGTTTGGGGATGGATCTATGCACATCC
                      ____________________________________________________________
consensus             AAGAAATCGAGTTTGCCCTCGTCCTGTCTCATTAGTTTGGGGATGGATCTATGCACATCC
 
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rJMSF030E21+          CAGCTGTTTGTGAATCAGTACATTGGACACAGGTACAGAACCCTCCGTTCTCATATGCAC
                      ____________________________________________________________
consensus             CAGCTGTTTGTGAATCAGTACATTGGACACAGGTACAGAACCCTCCGTTCTCATATGCAC
 
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rJMSF030E21+          CAATTACTCTCGCCATTCAATGCAGGATGTGGACTCTAGAATCTGCAATGCTCTTCAGTG
                      ____________________________________________________________
consensus             CAATTACTCTCGCCATTCAATGCAGGATGTGGACTCTAGAATCTGCAATGCTCTTCAGTG
 
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rJMSF030E21+          TGGAGGTCTGTGCATGCATACTCTACTACTAGTATAGTATATATACACAAAACAAGTACG
rJMFF047H18+                     GCATGCATACTCTACTACTAGTATAGTATATATACACAACACAAGTACG
                      ____________________________________________________________
consensus             TGGAGGTCTGTGCATGCATACTCTACTACTAGTATAGTATATATACACAACACAAGTACG
 
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rJMSF030E21+          CATATTTATAGGGTAAATGGGACGTGTGATATTAGTCACAGTGACAATGTGAGGTTGTGT
rJMFF047H18+          CATATTTATAGGGTAAATGGGACGTGTGATATTAGTCACAGTGACAATGTGAGGTTGTGT
                      ____________________________________________________________
consensus             CATATTTATAGGGTAAATGGGACGTGTGATATTAGTCACAGTGACAATGTGAGGTTGTGT
 
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rJMSF030E21+          ACAAGTAGGAAAATAGCGTAAGATCAGCTCCTCATTAGTGTCCATGAATAATAGTTTGGT
rJMSF004D19+                                                      TGAATAATAGTTTGGT
rJMFF047H18+          ACAAGTAGGAAAATAGCGTAAGATCAGCTCCTCATTAGTGTCCATGAATAATAGTTTGGT
                      ____________________________________________________________
consensus             ACAAGTAGGAAAATAGCGTAAGATCAGCTCCTCATTAGTGTCCATGAATAATAGTTTGGT
 
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rJMSF030E21+          GTGGGATGCCCTTAGCTTGGGTTCCAGATAATAGT                         
rJMSF004D19+          GTGGGATGCCCTTAGCATGGGNTCCAGATAATAGTTGGAGTGATGCAAGAAACNCAAATA
rJMFF047H18+          GTGGGATGCCCTTAGCTTGGGTTCCAGATAATAGTTGGAGTGATGCAAGAAACACAAATA
                      ____________________________________________________________
consensus             GTGGGATGCCCTTAGCTTGGGTTCCAGATAATAGTTGGAGTGATGCAAGAAACACAAATA
 
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rJMSF004D19+          ATTCCTCCCNTACCNTTACACTTTGTAACACNAGAATTCTTNAGACTTTNTTTTTTGAAA
rJMFF047H18+          ATTCCTCCATTACCATTACA-TTTGTAACACAAGAATTCTTGAGACTTTTTTTTTTGAAA
                      ____________________________________________________________
consensus             ATTCCTCCCTTACCATTACACTTTGTAACACAAGAATTCTTGAGACTTTTTTTTTTGAAA
 
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rJMSF004D19+          TATTGTTACTCGGTNTCATGCGGGAAATTT                              
rJMFF047H18+          TATTGTTACTCGGTTTCATGCGGGAAATTTTGTAATGGGATTTCAGGCACTATATTTATC
                      ____________________________________________________________
consensus             TATTGTTACTCGGTTTCATGCGGGAAATTTTGTAATGGGATTTCAGGCACTATATTTATC
 
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rJMFF047H18+          AGTTCTTATTTTTAAGTCTACTTGGCATACCTCCTTTTACTTATGTATCTCTAGGAGTGA
                      ____________________________________________________________
consensus             AGTTCTTATTTTTAAGTCTACTTGGCATACCTCCTTTTACTTATGTATCTCTAGGAGTGA
 
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rJMFF047H18+          GATTAGATGCGGACAGGTTGCTAGGTGTGAACACGTGGGATGTACTGGCAAGCAATTATG
                      ____________________________________________________________
consensus             GATTAGATGCGGACAGGTTGCTAGGTGTGAACACGTGGGATGTACTGGCAAGCAATTATG
 
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rJMFF047H18+          CATTGTAAAGTATGTCTAAATGCATAGTGCACTTCTTGATTCTCATTGATTGTCAAGTCT
                      ____________________________________________________________
consensus             CATTGTAAAGTATGTCTAAATGCATAGTGCACTTCTTGATTCTCATTGATTGTCAAGTCT
 
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rJMFF047H18+          CAGACATTTAGAAATTAAAAATGCTTGACGGTGTAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             CAGACATTTAGAAATTAAAAATGCTTGACGGTGTAAAAAAAAAAAAAAACTCTCCAGGGT