Contig 001219:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036J24Sequence505001734 (4)ref|XP_006363581.1|1e-56PREDICTED: COBRA-like protein 7-like [Solanum tuberosum]684001219 (4)ref|XP_006363581.1|2e-69PREDICTED: COBRA-like protein 7-like [Solanum tuberosum]
JMFF046F16Sequence460001734 (4)ref|XP_006363581.1|4e-49PREDICTED: COBRA-like protein 7-like [Solanum tuberosum]383001219 (4)emb|CDO98803.1|2e-12unnamed protein product [Coffea canephora]
JMFF047C17Sequence488001734 (4)ref|XP_006363581.1|1e-53PREDICTED: COBRA-like protein 7-like [Solanum tuberosum]373001219 (4)
JMSF043G05Sequence748001734 (4)ref|XP_006363581.1|1e-117PREDICTED: COBRA-like protein 7-like [Solanum tuberosum]786001219 (4)ref|XP_006363581.1|4e-89PREDICTED: COBRA-like protein 7-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF043G05+           CCCGCCAATACAGCCAGCACTTGTAGCACCAAAGCGCCCGCGCTTCTCCTCCCCGCCCA
                      ____________________________________________________________
consensus              CCCGCCAATACAGCCAGCACTTGTAGCACCAAAGCGCCCGCGCTTCTCCTCCCCGCCCA
 
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rJMSF043G05+          GTCCCTGTTGGTTCCTTTCGAGAACAGGACTAAATTGTCCTTAGCCTGGGCCGGGATTAA
                      ____________________________________________________________
consensus             GTCCCTGTTGGTTCCTTTCGAGAACAGGACTAAATTGTCCTTAGCCTGGGCCGGGATTAA
 
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rJMSF043G05+          CCATTTCCCCGTCCCGAACCCTCTACCGTGTCCAGATAACTGCGGCGTTAGTATCAACTG
rJMFF036J24+                                       GTCCAGATAACTGCGGCGTTAGTATCAACTG
                      ____________________________________________________________
consensus             CCATTTCCCCGTCCCGAACCCTCTACCGTGTCCAGATAACTGCGGCGTTAGTATCAACTG
 
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rJMSF043G05+          GCATTTGTTCACGGACTACCGGGGCGGGTGGTCTGCCCGGATCACGCTCTTCAACTGGGA
rJMFF036J24+          GCATTTGTTCACGGACTACCGGGGCGGGTGGTCTGCCCGGATCACGCTCTTCAACTGGGA
                      ____________________________________________________________
consensus             GCATTTGTTCACGGACTACCGGGGCGGGTGGTCTGCCCGGATCACGCTCTTCAACTGGGA
 
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rJMSF043G05+          CGACTCTGCATTCGCCGATTGGTTCGCCGCAATTGAATTGGACAAAGCTGCCCCCGGCTT
rJMFF036J24+          CGACTCTGCATTCGCCGATTGGTTCGCCGCAATTGAATTGGACAAAGCTGCCCCCGGCTT
                      ____________________________________________________________
consensus             CGACTCTGCATTCGCCGATTGGTTCGCCGCAATTGAATTGGACAAAGCTGCCCCCGGCTT
 
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rJMSF043G05+          CGAGAAGGTCTATTCCTTCAACGGGAGCACACTAAGTGGCGTGGACAACACGATTTTCAT
rJMFF036J24+          CGAGAAGGTCTATTCCTTCAACGGGAGCACACTAAGTGGCGTGGACAACACGATTTTCAT
                      ____________________________________________________________
consensus             CGAGAAGGTCTATTCCTTCAACGGGAGCACACTAAGTGGCGTGGACAACACGATTTTCAT
 
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rJMSF043G05+          GCAGGGCCTTCCCGGGTTGAACTATTTGGTAGGAGAGGCAGACGGGGCGAATCCTGAGAG
rJMFF036J24+          GCAGGGCCTTCCCGGGTTGAACTATTTGGTAGGAGAGGCAGACGGGGCGAATCCTGAGAG
                      ____________________________________________________________
consensus             GCAGGGCCTTCCCGGGTTGAACTATTTGGTAGGAGAGGCAGACGGGGCGAATCCTGAGAG
 
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rJMSF043G05+          GGATCCCAGAGTACCAGGTAAACAGCAGTCTGTAATTTCGTTCTCGAAGAAGAACATTCC
rJMFF036J24+          GGATCCCAGAGTACCAGGTAAACAGCAGTCTGTAATTTCGTTCTCGAAGAAGAACATTCC
rJMFF046F16+                                                             GAACATTCC
                      ____________________________________________________________
consensus             GGATCCCAGAGTACCAGGTAAACAGCAGTCTGTAATTTCGTTCTCGAAGAAGAACATTCC
 
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rJMSF043G05+          CGGTATCAACGTGGCTGCTGGTGACGGGTTCCCGACCAAGGTGTTCTTCAATGGAGAAGA
rJMFF036J24+          CGGTATCAACGTGGCTGCTGGTGACGGGTTCCCGACCAAGGTGTTCTTCAATGGAGAAGA
rJMFF046F16+          CGGTATCAACGTGGCTGCTGGTGACGGGTTCCCGACCAAGGTGTTCTTCAATGGAGAAGA
rJMFF047C17+                                                         TCAATGGAGAAGA
                      ____________________________________________________________
consensus             CGGTATCAACGTGGCTGCTGGTGACGGGTTCCCGACCAAGGTGTTCTTCAATGGAGAAGA
 
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rJMSF043G05+          GTGTTCACTGCCGAAAATTCTCCCGAAAAGCGGGTCATTTAGAGTGAGCTCATCCATGCT
rJMFF036J24+          GTGTTCACTGCCGAAAATTCTCCCGAAAAGCGGGTCATTTAGAGTGAGCTCATCCATGCT
rJMFF046F16+          GTGTTCACTGCCGAAAATTCTCCCGAAAAGCGGGTCATTTAGAGTGAGCTCATCCATGCT
rJMFF047C17+          GTGTTCACTGCCGAAAATTCTCCCGAAAAGCGGGTCATTTAGAGTGAGCTCATCCATGCT
                      ____________________________________________________________
consensus             GTGTTCACTGCCGAAAATTCTCCCGAAAAGCGGGTCATTTAGAGTGAGCTCATCCATGCT
 
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rJMSF043G05+          CACTTCCACCATCCTTGCTCTCCTGGTCTTCATGTTGTTAAGACTATAAACTGCACTGTC
rJMFF036J24+          CACTTCCACCATCCTTGCTCTCCTGGTCTTCATGTTGTTAAGACTATAAACTGCACTGTC
rJMFF046F16+          CACTTCCACCATCCTTGCTCTCCTGGTCTTCATGTTGTTAAGACTATAAACTGCACTGTC
rJMFF047C17+          CACTTCCACCATCCTTGCTCTCCTGGTCTTCATGTTGTTAAGACTATAAACTGCACTGTC
                      ____________________________________________________________
consensus             CACTTCCACCATCCTTGCTCTCCTGGTCTTCATGTTGTTAAGACTATAAACTGCACTGTC
 
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rJMSF043G05+          TTATTTCTTCATTCTTTAGACTGATTGTGGAGTCTTCAAGCTATACACCCAGAAGACAAA
rJMFF036J24+          TTATTTCTTCATTCTTTAGACTGATTGTGGAGTCTTCAAGCTATACACCCAGAAGACAAA
rJMFF046F16+          TTATTTCTTCATTCTTTAGACTGATTGTGGAGTCTTCAAGCTATACACCCAGAAGACAAA
rJMFF047C17+          TTATTTCTTCATTCTTTAGACTGATTGTGGAGTCTTCAAGCTATACACCCAGAAGACAAA
                      ____________________________________________________________
consensus             TTATTTCTTCATTCTTTAGACTGATTGTGGAGTCTTCAAGCTATACACCCAGAAGACAAA
 
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rJMSF043G05+          TGATTGTATGTAATTTTTGTGCAAAGGATTTTGCCACTCAGTTCTCTGAGTCCAATTTGT
rJMFF036J24+          TGATTGTATGTAATTTTTGTGCAAAGGATTTTGCCACTCAGTTCTCTGAGTCCAATTTGT
rJMFF046F16+          TGATTGTATGTAATTTTTGTGCAAAGGATTTTGCCACTCAGTTCTCTGAGTCCAATTTGT
rJMFF047C17+          TGATTGTATGTAATTTTTGTGCAAAGGATTTTGCCACTCAGTTCTCTGAGTCCAATTTGT
                      ____________________________________________________________
consensus             TGATTGTATGTAATTTTTGTGCAAAGGATTTTGCCACTCAGTTCTCTGAGTCCAATTTGT
 
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rJMSF043G05+          GTAGGCT                                                     
rJMFF036J24+          GTAGGCTGATATACATGATGTAATCATTGACATCTAATACCGCTTATTTCAAT       
rJMFF046F16+          GTAGGCTGATATACATGATGTAATCATTGACATCTAATACCGCTTATTTCAATTCTTCAG
rJMFF047C17+          GTAGGCTGATATACATGATGTAATCATTGACATCTAATACCGCTTATTTCAATTCTTCAG
                      ____________________________________________________________
consensus             GTAGGCTGATATACATGATGTAATCATTGACATCTAATACCGCTTATTTCAATTCTTCAG
 
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rJMFF046F16+          TTTCATTTTTTTTT                                              
rJMFF047C17+          TTTCATTTTTTTTTXXXXXXXXXXXXXXXXXXGAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TTTCATTTTTTTTTNNNNNNNNNNNNNNNNNNGAAAAAAAAAAAAAAAACTCTCCAGGGT