Contig 001217:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF047B21+                                                      TTGGATCCCGATTACT
                      ____________________________________________________________
consensus                                                         TTGGATCCCGATTACT
 
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rJMSF047B21+          ACAGGTCGTTCCGGCTGAACGAGAAGAGCGATGTGTATAGCTTCGGGGTGGTTTTGTTGG
                      ____________________________________________________________
consensus             ACAGGTCGTTCCGGCTGAACGAGAAGAGCGATGTGTATAGCTTCGGGGTGGTTTTGTTGG
 
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rJMSF047B21+          AGCTGATAACCGGGATGAAAGCTGTGGATCAGACGAGGGAGAAGAGTGAGATGACGTTGG
                      ____________________________________________________________
consensus             AGCTGATAACCGGGATGAAAGCTGTGGATCAGACGAGGGAGAAGAGTGAGATGACGTTGG
 
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rJMSF047B21+          CGGATATGGTGGTTCCCAAGATTCAAATGGGGTTGCTGCACCAGGTGCTCGACCCCGTCC
                      ____________________________________________________________
consensus             CGGATATGGTGGTTCCCAAGATTCAAATGGGGTTGCTGCACCAGGTGCTCGACCCCGTCC
 
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rJMSF047B21+          TCGTGGTCGACGGGGAGGCCAAGGAAGGCGTTGGCGCTGTGGCGGAGCTTGCGTTCCGGT
                      ____________________________________________________________
consensus             TCGTGGTCGACGGGGAGGCCAAGGAAGGCGTTGGCGCTGTGGCGGAGCTTGCGTTCCGGT
 
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rJMSF047B21+          GCGTGGCTGCGGACAAGGATGATCGGCCCGACGCCAGGGAGGTGGCGGCCGAGCTGCGGC
                      ____________________________________________________________
consensus             GCGTGGCTGCGGACAAGGATGATCGGCCCGACGCCAGGGAGGTGGCGGCCGAGCTGCGGC
 
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rJMSF047B21+          GGATCAGGAGCCGTGCTCGGGGGAGTGGCGTTTTGAGGACTTCCAATTCCAGCAATGCCG
rJMFF046P04+                                                                     G
                      ____________________________________________________________
consensus             GGATCAGGAGCCGTGCTCGGGGGAGTGGCGTTTTGAGGACTTCCAATTCCAGCAATGCCG
 
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rJMSF047B21+          TAGTTCCTGATGGAGCTGGGCTAATAATTGATTGAGTGGAAATTTGCATCTATTTCTCGC
rJMFF046P04+          TAGTTCCTGATGGAGCTGGGCTAATAATTGATTGAGTGGAAATTTGCATCTATTTCTCGC
                      ____________________________________________________________
consensus             TAGTTCCTGATGGAGCTGGGCTAATAATTGATTGAGTGGAAATTTGCATCTATTTCTCGC
 
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rJMSF047B21+          TATTTGATCGGTCAAGGTCTCCCATTGACTCCGGTTCTTGGTGGGATTCAAGGTCAAGGT
rJMFF046P04+          TATTTGATCGGTCAAGGTCTCCCATTGACTCCGGTTCTTGGTGGGATTCAAGGTCAAGGT
                      ____________________________________________________________
consensus             TATTTGATCGGTCAAGGTCTCCCATTGACTCCGGTTCTTGGTGGGATTCAAGGTCAAGGT
 
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rJMSF047B21+          CTCCTACTTACCCCGGATTCTCGGTAGAATTCAAACTCCCACACTGTCACTGGAGCTGGT
rJMFF046P04+          CTCCTACTTACCCCGGATTCTCGGTAGAATTCAAACTCCCACACTGTCACTGGAGCTGGT
                      ____________________________________________________________
consensus             CTCCTACTTACCCCGGATTCTCGGTAGAATTCAAACTCCCACACTGTCACTGGAGCTGGT
 
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rJMSF047B21+          CAAGGTCTCCTATTGATCCCGCCCCCCGATAGCTCCCACTGTGACTGGAGCAAAGTTTTA
rJMFF046P04+          CAAGGTCTCCTATTGATCCCGCCCCCCGATAGCTCCCACTGTGACTGGAGCAAAGTTTTA
                      ____________________________________________________________
consensus             CAAGGTCTCCTATTGATCCCGCCCCCCGATAGCTCCCACTGTGACTGGAGCAAAGTTTTA
 
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rJMSF047B21+          AGGTGATCGATCAAACTAATTAAGCTAGCCCCTCAGGGAGGGCATTGCATCTGTTTCTTT
rJMFF046P04+          AGGTGATCGATCAAACTAATTAAGCTAGCCCCTCAGGGAGGGCATTGCATCTGTTTCTTT
                      ____________________________________________________________
consensus             AGGTGATCGATCAAACTAATTAAGCTAGCCCCTCAGGGAGGGCATTGCATCTGTTTCTTT
 
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rJMSF047B21+          GCATTGTGATAGAATGTAAATACATAAATTCTT                           
rJMFF046P04+          GCATTGTGATAGAATGTAAATACATAAATTCTTGGTTTCCTTGAACTACTTTCATTTCAT
                      ____________________________________________________________
consensus             GCATTGTGATAGAATGTAAATACATAAATTCTTGGTTTCCTTGAACTACTTTCATTTCAT
 
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rJMFF046P04+          GCATAATTGCAAATGGTCTATTCTGCAAAAATAATAAGACACAAAATCTATCAATCAACC
                      ____________________________________________________________
consensus             GCATAATTGCAAATGGTCTATTCTGCAAAAATAATAAGACACAAAATCTATCAATCAACC