Contig 001216:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046J23Sequence525001580 (7)gb|AAG50783.1|AC079027_63e-21hypothetical protein, 3' partial [Arabidopsis thaliana]521001216 (5)ref|XP_002316767.2|6e-29hypothetical protein POPTR_0011s09280g [Populus trichocarpa] gb|EEE97379.2| hypo
JMSF007B04Sequence298001580 (7)769001216 (5)gb|KDP39134.1|7e-75hypothetical protein JCGZ_00891 [Jatropha curcas]
JMSF040O10Sequence614001580 (7)gb|AAG50783.1|AC079027_62e-29hypothetical protein, 3' partial [Arabidopsis thaliana]854001216 (5)ref|XP_002280015.1|362PREDICTED: uncharacterized protein LOC100253742 [Vitis vinifera] emb|CBI26640.3|
JMSF043F04Sequence778001580 (7)ref|XP_009592787.1|239PREDICTED: uncharacterized protein LOC104089563 [Nicotiana tomentosiformis]748001216 (5)gb|KDP39134.1|1e-76hypothetical protein JCGZ_00891 [Jatropha curcas]
JMSF044F09Sequence817001580 (7)ref|XP_009592787.1|239PREDICTED: uncharacterized protein LOC104089563 [Nicotiana tomentosiformis]825001216 (5)ref|XP_002280015.1|342PREDICTED: uncharacterized protein LOC100253742 [Vitis vinifera] emb|CBI26640.3|

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040O10+ TTCCTAATCGGTACCTTGGAAT
                      ____________________________________________________________
consensus TTCCTAATCGGTACCTTGGAAT
 
. : . : . : . : . : . :
rJMSF040O10+ AACACCTACTTATTTATGGCAAACTCAACTCCTGCAGTCACCACTATCCATGGACATGGC
rJMSF044F09+ TTTATGGCAAACTCAACTCCTGCAGTCACCACTATCCATGGACATGGC
                      ____________________________________________________________
consensus AACACCTACTTATTTATGGCAAACTCAACTCCTGCAGTCACCACTATCCATGGACATGGC
 
. : . : . : . : . : . :
rJMSF040O10+ AGAATACCAGATATTGCTTTCACGTGAGGTTGGGAGTCGGTTAGATGCTAAATGTGATAA
rJMSF044F09+ AGAATACCAGATATTGCTTTCACGTGAGGTTGGGAGTCGGTTAGATGCTAAATGTGATAA
                      ____________________________________________________________
consensus AGAATACCAGATATTGCTTTCACGTGAGGTTGGGAGTCGGTTAGATGCTAAATGTGATAA
 
. : . : . : . : . : . :
rJMSF040O10+ GTTAGCAAATGTTGTTGCTATAGACGACATCGATCCATCAGCTAGTAATCAAATACCAAC
rJMSF044F09+ GTTAGCAAATGTTGTTGCTATAGACGACATCGATCCATCAGCTAGTAATCAAATACCAAC
                      ____________________________________________________________
consensus GTTAGCAAATGTTGTTGCTATAGACGACATCGATCCATCAGCTAGTAATCAAATACCAAC
 
. : . : . : . : . : . :
rJMSF040O10+ TGCTCGTCTTCCAGAAAGGGTAAAATTGATAATTGAGGAGATTGAGAGAGAAGAAGCAAC
rJMSF044F09+ TGCTCGTCTTCCAGAAAGGGTAAAATTGATAATTGAGGAGATTGAGAGAGAAGAAGCAAC
rJMSF043F04+ TTGAGGAGATTGAGAGAGAAGAAGCAAC
                      ____________________________________________________________
consensus TGCTCGTCTTCCAGAAAGGGTAAAATTGATAATTGAGGAGATTGAGAGAGAAGAAGCAAC
 
. : . : . : . : . : . :
rJMSF040O10+ CCTGCGTGAAGATTTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
rJMSF044F09+ CCTGCGTGAAGATTTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
rJMSF043F04+ CCTGCGTGAAGATTTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
rJMSF007B04+ TTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
                      ____________________________________________________________
consensus CCTGCGTGAAGATTTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
 
. : . : . : . : . : . :
rJMSF040O10+ GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
rJMSF044F09+ GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
rJMSF043F04+ GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
rJMSF007B04+ GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
                      ____________________________________________________________
consensus GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
 
. : . : . : . : . : . :
rJMSF040O10+ ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
rJMSF044F09+ ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
rJMSF043F04+ ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
rJMSF007B04+ ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
                      ____________________________________________________________
consensus ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
 
. : . : . : . : . : . :
rJMSF040O10+ GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCAGCACT
rJMSF044F09+ GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCGGCACT
rJMSF043F04+ GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCGGCACT
rJMSF007B04+ GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCAGCACT
                      ____________________________________________________________
consensus GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCGGCACT
 
. : . : . : . : . : . :
rJMSF040O10+ CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
rJMSF044F09+ CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
rJMSF043F04+ CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
rJMSF007B04+ CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
rJMFF046J23+ TGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
                      ____________________________________________________________
consensus CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
 
. : . : . : . : . : . :
rJMSF040O10+ AGCGGCCACTCGCCTCCGCGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
rJMSF044F09+ AGCGGCCACCCGCCTCCGTGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
rJMSF043F04+ AGCGGCCACCCGCCTCCGTGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
rJMSF007B04+ AGCGGCCACTCGCCTCCGCGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
rJMFF046J23+ AGCGGCCACTCGCCTCCGCGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
                      ____________________________________________________________
consensus AGCGGCCACTCGCCTCCGCGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
 
. : . : . : . : . : . :
rJMSF040O10+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
rJMSF044F09+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
rJMSF043F04+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
rJMSF007B04+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
rJMFF046J23+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
                      ____________________________________________________________
consensus ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
 
. : . : . : . : . : . :
rJMSF040O10+ AATGGACCTGAAACGTTTGCCTGCTTATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
rJMSF044F09+ AATGGACCTGAAACGTTTGCCTGCTCATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
rJMSF043F04+ AATGGACCTGAAACGTTTGCCTGCTCATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
rJMSF007B04+ AATGGACCTGAAACGTTTGCCTGCTTATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
rJMFF046J23+ AATGGACCTGAAACGTTTGCCTGCTTATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
                      ____________________________________________________________
consensus AATGGACCTGAAACGTTTGCCTGCTTATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
 
. : . : . : . : . : . :
rJMSF040O10+ CCACTCCAGGAGATGAATGCAGTAGAGGATTTAAGTTTCAAGAGCTCATTGTTGTGTGTA
rJMSF044F09+ CCACTCCAGGAGAT----------GAGGATTTGAGTTACAAGAGCTCATTGTTGTGTGTA
rJMSF043F04+ CCACTCCAGGAGAT----------GAGGATTTGAGTTACAAGAGCTCATTGTTGTGTGTA
rJMSF007B04+ CCACTCCAGGAGATGAATGCAGTAGAGGATTTAAGTTTCAAGAGCTCATTGTTGTGTGTA
rJMFF046J23+ CCACTCCAGGAGATGAATGCAGTAGAGGATTTAAGTTTCAAGAGCTCATTGTTGTGTGTA
                      ____________________________________________________________
consensus CCACTCCAGGAGATGAATGCAGTAGAGGATTTAAGTTTCAAGAGCTCATTGTTGTGTGTA
 
. : . : . : . : . : . :
rJMSF040O10+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATT
rJMSF044F09+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
rJMSF043F04+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
rJMSF007B04+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
rJMFF046J23+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
                      ____________________________________________________________
consensus TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
 
. : . : . : . : . : . :
rJMSF044F09+ CAACACT
rJMSF043F04+ CAACACTAATTAAATACCATGTCTAATAGTAAAATATTTGATTAAAAATTTGGTCTTAAA
rJMSF007B04+ CAACACTAATT----------TCTAATAGTAAAATATTTGATTAAAAATTTGGTCTTAAA
rJMFF046J23+ CAACACTAATT----------TCTAATAGTAAAATATTTGATTAAAAATTTGGTCTTAAA
                      ____________________________________________________________
consensus CAACACTAATT----------TCTAATAGTAAAATATTTGATTAAAAATTTGGTCTTAAA
 
. : . : . : . : . : . :
rJMSF043F04+ TAGCATTTTTTATTTCCCAAATGTATAGTTCTGTAGCA-TTTTTTATTTACTTGACGATC
rJMSF007B04+ TAGCATTTTTTATTTCCC-AATGTATAGTTCTGTAGCATTTTTTTATTTACTTGACGATC
rJMFF046J23+ TAGCATTTTTTATTTCCC-AATGTATAGTTCTGTAGCA-TTTTTTATTTACTTGACGATC
                      ____________________________________________________________
consensus TAGCATTTTTTATTTCCC-AATGTATAGTTCTGTAGCA-TTTTTTATTTACTTGACGATC
 
. : . : . : . : . : . :
rJMSF043F04+ AATGCCCGTGT
rJMSF007B04+ AATGCCCGTGTTGATACTT
rJMFF046J23+ AATGCCCGTGTTGATACTTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus AATGCCCGTGTTGATACTTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG