| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF046J23 | Sequence | 525 | 001580 (7) | gb|AAG50783.1|AC079027_6 | 3e-21 | hypothetical protein, 3' partial [Arabidopsis thaliana] | 521 | 001216 (5) | ref|XP_002316767.2| | 6e-29 | hypothetical protein POPTR_0011s09280g [Populus trichocarpa] gb|EEE97379.2| hypo |
| JMSF007B04 | Sequence | 298 | 001580 (7) | 769 | 001216 (5) | gb|KDP39134.1| | 7e-75 | hypothetical protein JCGZ_00891 [Jatropha curcas] | |||
| JMSF040O10 | Sequence | 614 | 001580 (7) | gb|AAG50783.1|AC079027_6 | 2e-29 | hypothetical protein, 3' partial [Arabidopsis thaliana] | 854 | 001216 (5) | ref|XP_002280015.1| | 362 | PREDICTED: uncharacterized protein LOC100253742 [Vitis vinifera] emb|CBI26640.3| |
| JMSF043F04 | Sequence | 778 | 001580 (7) | ref|XP_009592787.1| | 239 | PREDICTED: uncharacterized protein LOC104089563 [Nicotiana tomentosiformis] | 748 | 001216 (5) | gb|KDP39134.1| | 1e-76 | hypothetical protein JCGZ_00891 [Jatropha curcas] |
| JMSF044F09 | Sequence | 817 | 001580 (7) | ref|XP_009592787.1| | 239 | PREDICTED: uncharacterized protein LOC104089563 [Nicotiana tomentosiformis] | 825 | 001216 (5) | ref|XP_002280015.1| | 342 | PREDICTED: uncharacterized protein LOC100253742 [Vitis vinifera] emb|CBI26640.3| |
This contig is upended
. : . : . : . : . : . :
rJMSF040O10+ TTCCTAATCGGTACCTTGGAAT
____________________________________________________________
consensus TTCCTAATCGGTACCTTGGAAT
. : . : . : . : . : . :
rJMSF040O10+ AACACCTACTTATTTATGGCAAACTCAACTCCTGCAGTCACCACTATCCATGGACATGGC
rJMSF044F09+ TTTATGGCAAACTCAACTCCTGCAGTCACCACTATCCATGGACATGGC
____________________________________________________________
consensus AACACCTACTTATTTATGGCAAACTCAACTCCTGCAGTCACCACTATCCATGGACATGGC
. : . : . : . : . : . :
rJMSF040O10+ AGAATACCAGATATTGCTTTCACGTGAGGTTGGGAGTCGGTTAGATGCTAAATGTGATAA
rJMSF044F09+ AGAATACCAGATATTGCTTTCACGTGAGGTTGGGAGTCGGTTAGATGCTAAATGTGATAA
____________________________________________________________
consensus AGAATACCAGATATTGCTTTCACGTGAGGTTGGGAGTCGGTTAGATGCTAAATGTGATAA
. : . : . : . : . : . :
rJMSF040O10+ GTTAGCAAATGTTGTTGCTATAGACGACATCGATCCATCAGCTAGTAATCAAATACCAAC
rJMSF044F09+ GTTAGCAAATGTTGTTGCTATAGACGACATCGATCCATCAGCTAGTAATCAAATACCAAC
____________________________________________________________
consensus GTTAGCAAATGTTGTTGCTATAGACGACATCGATCCATCAGCTAGTAATCAAATACCAAC
. : . : . : . : . : . :
rJMSF040O10+ TGCTCGTCTTCCAGAAAGGGTAAAATTGATAATTGAGGAGATTGAGAGAGAAGAAGCAAC
rJMSF044F09+ TGCTCGTCTTCCAGAAAGGGTAAAATTGATAATTGAGGAGATTGAGAGAGAAGAAGCAAC
rJMSF043F04+ TTGAGGAGATTGAGAGAGAAGAAGCAAC
____________________________________________________________
consensus TGCTCGTCTTCCAGAAAGGGTAAAATTGATAATTGAGGAGATTGAGAGAGAAGAAGCAAC
. : . : . : . : . : . :
rJMSF040O10+ CCTGCGTGAAGATTTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
rJMSF044F09+ CCTGCGTGAAGATTTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
rJMSF043F04+ CCTGCGTGAAGATTTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
rJMSF007B04+ TTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
____________________________________________________________
consensus CCTGCGTGAAGATTTGTATTCATCAGACAGAAAATTTGCAGAATATTACAACGTTTTGGA
. : . : . : . : . : . :
rJMSF040O10+ GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
rJMSF044F09+ GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
rJMSF043F04+ GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
rJMSF007B04+ GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
____________________________________________________________
consensus GCAGATACTAGGAGTGCTTATCAAGCTTGTCAAAGATATAAAGTTGAAACATCAGCATAA
. : . : . : . : . : . :
rJMSF040O10+ ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
rJMSF044F09+ ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
rJMSF043F04+ ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
rJMSF007B04+ ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
____________________________________________________________
consensus ATATGATGAGCTGCAAAAAACTTGGCTGAGCAAAAGATGTGATACCATGAGTGCAAAATT
. : . : . : . : . : . :
rJMSF040O10+ GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCAGCACT
rJMSF044F09+ GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCGGCACT
rJMSF043F04+ GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCGGCACT
rJMSF007B04+ GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCAGCACT
____________________________________________________________
consensus GAGGGTTTTAGAGCACATTCTCCTGCTTGAGACTTATACACCAGACACAATTCCGGCACT
. : . : . : . : . : . :
rJMSF040O10+ CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
rJMSF044F09+ CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
rJMSF043F04+ CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
rJMSF007B04+ CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
rJMFF046J23+ TGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
____________________________________________________________
consensus CCATAAAATAAGGAAATATTTGGTTGAATCTACAGAAGAAGCTTCACTTGCATATAATAA
. : . : . : . : . : . :
rJMSF040O10+ AGCGGCCACTCGCCTCCGCGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
rJMSF044F09+ AGCGGCCACCCGCCTCCGTGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
rJMSF043F04+ AGCGGCCACCCGCCTCCGTGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
rJMSF007B04+ AGCGGCCACTCGCCTCCGCGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
rJMFF046J23+ AGCGGCCACTCGCCTCCGCGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
____________________________________________________________
consensus AGCGGCCACTCGCCTCCGCGAGTATCAGGGTGTTGATCCGCACTTTGACATGATTGCCAG
. : . : . : . : . : . :
rJMSF040O10+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
rJMSF044F09+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
rJMSF043F04+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
rJMSF007B04+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
rJMFF046J23+ ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
____________________________________________________________
consensus ACAATACCATGACATAGTCAAGAAATTGGAAAATATGCGTTGGACTATCCAGCAAGTCGA
. : . : . : . : . : . :
rJMSF040O10+ AATGGACCTGAAACGTTTGCCTGCTTATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
rJMSF044F09+ AATGGACCTGAAACGTTTGCCTGCTCATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
rJMSF043F04+ AATGGACCTGAAACGTTTGCCTGCTCATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
rJMSF007B04+ AATGGACCTGAAACGTTTGCCTGCTTATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
rJMFF046J23+ AATGGACCTGAAACGTTTGCCTGCTTATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
____________________________________________________________
consensus AATGGACCTGAAACGTTTGCCTGCTTATCCTGGAGCCTGAGGTATATTGATTCTGTCTTT
. : . : . : . : . : . :
rJMSF040O10+ CCACTCCAGGAGATGAATGCAGTAGAGGATTTAAGTTTCAAGAGCTCATTGTTGTGTGTA
rJMSF044F09+ CCACTCCAGGAGAT----------GAGGATTTGAGTTACAAGAGCTCATTGTTGTGTGTA
rJMSF043F04+ CCACTCCAGGAGAT----------GAGGATTTGAGTTACAAGAGCTCATTGTTGTGTGTA
rJMSF007B04+ CCACTCCAGGAGATGAATGCAGTAGAGGATTTAAGTTTCAAGAGCTCATTGTTGTGTGTA
rJMFF046J23+ CCACTCCAGGAGATGAATGCAGTAGAGGATTTAAGTTTCAAGAGCTCATTGTTGTGTGTA
____________________________________________________________
consensus CCACTCCAGGAGATGAATGCAGTAGAGGATTTAAGTTTCAAGAGCTCATTGTTGTGTGTA
. : . : . : . : . : . :
rJMSF040O10+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATT
rJMSF044F09+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
rJMSF043F04+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
rJMSF007B04+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
rJMFF046J23+ TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
____________________________________________________________
consensus TTGCATTTTATCAAGTTGTCTAATATACACATCCTGTTGCAACAAGAGCATTTAGAGTTG
. : . : . : . : . : . :
rJMSF044F09+ CAACACT
rJMSF043F04+ CAACACTAATTAAATACCATGTCTAATAGTAAAATATTTGATTAAAAATTTGGTCTTAAA
rJMSF007B04+ CAACACTAATT----------TCTAATAGTAAAATATTTGATTAAAAATTTGGTCTTAAA
rJMFF046J23+ CAACACTAATT----------TCTAATAGTAAAATATTTGATTAAAAATTTGGTCTTAAA
____________________________________________________________
consensus CAACACTAATT----------TCTAATAGTAAAATATTTGATTAAAAATTTGGTCTTAAA
. : . : . : . : . : . :
rJMSF043F04+ TAGCATTTTTTATTTCCCAAATGTATAGTTCTGTAGCA-TTTTTTATTTACTTGACGATC
rJMSF007B04+ TAGCATTTTTTATTTCCC-AATGTATAGTTCTGTAGCATTTTTTTATTTACTTGACGATC
rJMFF046J23+ TAGCATTTTTTATTTCCC-AATGTATAGTTCTGTAGCA-TTTTTTATTTACTTGACGATC
____________________________________________________________
consensus TAGCATTTTTTATTTCCC-AATGTATAGTTCTGTAGCA-TTTTTTATTTACTTGACGATC
. : . : . : . : . : . :
rJMSF043F04+ AATGCCCGTGT
rJMSF007B04+ AATGCCCGTGTTGATACTT
rJMFF046J23+ AATGCCCGTGTTGATACTTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus AATGCCCGTGTTGATACTTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG