Contig 001215:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034I21Sequence574006206 (6)emb|CAN66483.1|5e-41hypothetical protein VITISV_015390 [Vitis vinifera]587001215 (4)gb|ABN10955.2|5e-68auxin response factor 8 [Ipomoea nil]
JMFF040E12Sequence557006206 (6)emb|CAN66483.1|1e-37hypothetical protein VITISV_015390 [Vitis vinifera]775001215 (4)ref|XP_009789648.1|1e-85PREDICTED: auxin response factor 8-like [Nicotiana sylvestris]
JMFF046H18Sequence418002046 (28)356001215 (4)gb|ABN10955.2|3e-05auxin response factor 8 [Ipomoea nil]
JMSF001O08Sequence202002046 (28)763001215 (4)ref|XP_009789648.1|8e-86PREDICTED: auxin response factor 8-like [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+                                                        CTACTAGTGCTTCA
rJMFF040E12+                                              TTGTCAAGTGCTACTAGTGCTTCA
                      ____________________________________________________________
consensus                                                 TTGTCAAGTGCTACTAGTGCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          GTTGATGCAGATGCAGACATGTCCTCGGTGCAATTAGGGGCTTCTGGGTTTCAGAATTCT
rJMFF040E12+          GTTGATGCAGATGCAGACATGTCCTCGGTGCAATTAGGGGCTTCTGGGTTTCAGAATTCT
                      ____________________________________________________________
consensus             GTTGATGCAGATGCAGACATGTCCTCGGTGCAATTAGGGGCTTCTGGGTTTCAGAATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          CTGTATGATTACATGCAAGACTCTTCCGAGTTGATGCATAGTGCAGGACCAGTTGACCCA
rJMFF040E12+          CTGTATGATTACATGCAAGACTCTTCCGAGTTGATGCATAGTGCAGGACCAGTTGACCCA
                      ____________________________________________________________
consensus             CTGTATGATTACATGCAAGACTCTTCCGAGTTGATGCATAGTGCAGGACCAGTTGACCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          CTTACCCCAACTAGTGCATTTGTCAAGGTTTACAAATCGGGATCTGTTGGGAGGTCACTG
rJMFF034I21+                               GTCAAGGTTTACAAATCGGGATCTGTTGGGAGGTCACTG
rJMFF040E12+          CTTACCCCAACTAGTGCATTTGTCAAGGTTTACAAATCGGGATCTGTTGGGAGGTCACTG
                      ____________________________________________________________
consensus             CTTACCCCAACTAGTGCATTTGTCAAGGTTTACAAATCGGGATCTGTTGGGAGGTCACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          GACATCACCCGGTTCAACAGCTATCATGAGCTTCGTCAAGAACTGGGTCAGATGTATGGG
rJMFF034I21+          GACATCACCCGGTTCAACAGCTATCATGAGCTTCGTCAAGAACTGGGTCAGATGTATGGG
rJMFF040E12+          GACATCACCCGGTTCAACAGCTATCATGAGCTTCGTCAAGAACTGGGTCAGATGTATGGG
                      ____________________________________________________________
consensus             GACATCACCCGGTTCAACAGCTATCATGAGCTTCGTCAAGAACTGGGTCAGATGTATGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          ATCGAAGGGTTGCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGG
rJMFF034I21+          ATCGAAGGGTTGCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGG
rJMFF040E12+          ATCGAAGGGTTGCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGG
                      ____________________________________________________________
consensus             ATCGAAGGGTTGCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          GAGAATGATATTCTTCTTCTTGGAGACGACCCATGGGAGGCTTTTGTGAATAATGTGTGG
rJMFF034I21+          GAGAATGATATTCTTCTTCTTGGAGACGACCCATGGGAGGCTTTTGTGAATAATGTGTGG
rJMFF040E12+          GAGAATGATATTCTTCTTCTTGGAGACGACCCATGGGAGGCTTTTGTGAATAATGTGTGG
                      ____________________________________________________________
consensus             GAGAATGATATTCTTCTTCTTGGAGACGACCCATGGGAGGCTTTTGTGAATAATGTGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          TACATCAAAATCCTTTCACCCGAGGATGTGCAAACACTGGGGAAGCAAGAAGCTGAGTCC
rJMFF034I21+          TACATCAAAATCCTTTCACCCGAGGATGTGCAAACACTGGGGAAGCAAGAAGCTGAGTCC
rJMFF040E12+          TACATCAAAATCCTTTCACCCGAGGATGTGCAAACACTGGGGAAGCAAGAAGCTGAGTCC
                      ____________________________________________________________
consensus             TACATCAAAATCCTTTCACCCGAGGATGTGCAAACACTGGGGAAGCAAGAAGCTGAGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          CTTAGCCGGAACGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
rJMFF034I21+          CTTAGCCGGAATGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
rJMFF040E12+          CTTAGCCGGAATGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
rJMFF046H18+              GCCGGAATGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
                      ____________________________________________________________
consensus             CTTAGCCGGAATGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
rJMFF034I21+          TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
rJMFF040E12+          TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
rJMFF046H18+          TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
                      ____________________________________________________________
consensus             TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
rJMFF034I21+          TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
rJMFF040E12+          TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
rJMFF046H18+          TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
                      ____________________________________________________________
consensus             TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
rJMFF034I21+          ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
rJMFF040E12+          ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
rJMFF046H18+          ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
                      ____________________________________________________________
consensus             ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCTTTTAGATTGCGAATCTGAAC
rJMFF034I21+          CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCCTTTAGATTGCGAATCTGAAC
rJMFF040E12+          CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCCTTTAGATTGCGAATCTGAAC
rJMFF046H18+          CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCTTTTAGATTGCGAATCTGAAC
                      ____________________________________________________________
consensus             CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCTTTTAGATTGCGAATCTGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001O08+          CTCCTGAAATTTCTTGCTGTT                                       
rJMFF034I21+          CTCCTGAA                                                    
rJMFF040E12+          CTCCTGAAATTTCTTGCTGTT                                       
rJMFF046H18+          CTCCTGAAATTTCTTGCTGTTTCTTCAAAACCTTAAATATAAATTGCTTATCTTGCATTG
                      ____________________________________________________________
consensus             CTCCTGAAATTTCTTGCTGTTTCTTCAAAACCTTAAATATAAATTGCTTATCTTGCATTG