Contig 001215:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034I21Sequence574006206 (6)emb|CAN66483.1|5e-41hypothetical protein VITISV_015390 [Vitis vinifera]587001215 (4)gb|ABN10955.2|5e-68auxin response factor 8 [Ipomoea nil]
JMFF040E12Sequence557006206 (6)emb|CAN66483.1|1e-37hypothetical protein VITISV_015390 [Vitis vinifera]775001215 (4)ref|XP_009789648.1|1e-85PREDICTED: auxin response factor 8-like [Nicotiana sylvestris]
JMFF046H18Sequence418002046 (28)356001215 (4)gb|ABN10955.2|3e-05auxin response factor 8 [Ipomoea nil]
JMSF001O08Sequence202002046 (28)763001215 (4)ref|XP_009789648.1|8e-86PREDICTED: auxin response factor 8-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF001O08+ CTACTAGTGCTTCA
rJMFF040E12+ TTGTCAAGTGCTACTAGTGCTTCA
                      ____________________________________________________________
consensus TTGTCAAGTGCTACTAGTGCTTCA
 
. : . : . : . : . : . :
rJMSF001O08+ GTTGATGCAGATGCAGACATGTCCTCGGTGCAATTAGGGGCTTCTGGGTTTCAGAATTCT
rJMFF040E12+ GTTGATGCAGATGCAGACATGTCCTCGGTGCAATTAGGGGCTTCTGGGTTTCAGAATTCT
                      ____________________________________________________________
consensus GTTGATGCAGATGCAGACATGTCCTCGGTGCAATTAGGGGCTTCTGGGTTTCAGAATTCT
 
. : . : . : . : . : . :
rJMSF001O08+ CTGTATGATTACATGCAAGACTCTTCCGAGTTGATGCATAGTGCAGGACCAGTTGACCCA
rJMFF040E12+ CTGTATGATTACATGCAAGACTCTTCCGAGTTGATGCATAGTGCAGGACCAGTTGACCCA
                      ____________________________________________________________
consensus CTGTATGATTACATGCAAGACTCTTCCGAGTTGATGCATAGTGCAGGACCAGTTGACCCA
 
. : . : . : . : . : . :
rJMSF001O08+ CTTACCCCAACTAGTGCATTTGTCAAGGTTTACAAATCGGGATCTGTTGGGAGGTCACTG
rJMFF034I21+ GTCAAGGTTTACAAATCGGGATCTGTTGGGAGGTCACTG
rJMFF040E12+ CTTACCCCAACTAGTGCATTTGTCAAGGTTTACAAATCGGGATCTGTTGGGAGGTCACTG
                      ____________________________________________________________
consensus CTTACCCCAACTAGTGCATTTGTCAAGGTTTACAAATCGGGATCTGTTGGGAGGTCACTG
 
. : . : . : . : . : . :
rJMSF001O08+ GACATCACCCGGTTCAACAGCTATCATGAGCTTCGTCAAGAACTGGGTCAGATGTATGGG
rJMFF034I21+ GACATCACCCGGTTCAACAGCTATCATGAGCTTCGTCAAGAACTGGGTCAGATGTATGGG
rJMFF040E12+ GACATCACCCGGTTCAACAGCTATCATGAGCTTCGTCAAGAACTGGGTCAGATGTATGGG
                      ____________________________________________________________
consensus GACATCACCCGGTTCAACAGCTATCATGAGCTTCGTCAAGAACTGGGTCAGATGTATGGG
 
. : . : . : . : . : . :
rJMSF001O08+ ATCGAAGGGTTGCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGG
rJMFF034I21+ ATCGAAGGGTTGCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGG
rJMFF040E12+ ATCGAAGGGTTGCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGG
                      ____________________________________________________________
consensus ATCGAAGGGTTGCTTGAAGACCCTCAAAGATCAGGCTGGCAGCTTGTATTCGTCGACAGG
 
. : . : . : . : . : . :
rJMSF001O08+ GAGAATGATATTCTTCTTCTTGGAGACGACCCATGGGAGGCTTTTGTGAATAATGTGTGG
rJMFF034I21+ GAGAATGATATTCTTCTTCTTGGAGACGACCCATGGGAGGCTTTTGTGAATAATGTGTGG
rJMFF040E12+ GAGAATGATATTCTTCTTCTTGGAGACGACCCATGGGAGGCTTTTGTGAATAATGTGTGG
                      ____________________________________________________________
consensus GAGAATGATATTCTTCTTCTTGGAGACGACCCATGGGAGGCTTTTGTGAATAATGTGTGG
 
. : . : . : . : . : . :
rJMSF001O08+ TACATCAAAATCCTTTCACCCGAGGATGTGCAAACACTGGGGAAGCAAGAAGCTGAGTCC
rJMFF034I21+ TACATCAAAATCCTTTCACCCGAGGATGTGCAAACACTGGGGAAGCAAGAAGCTGAGTCC
rJMFF040E12+ TACATCAAAATCCTTTCACCCGAGGATGTGCAAACACTGGGGAAGCAAGAAGCTGAGTCC
                      ____________________________________________________________
consensus TACATCAAAATCCTTTCACCCGAGGATGTGCAAACACTGGGGAAGCAAGAAGCTGAGTCC
 
. : . : . : . : . : . :
rJMSF001O08+ CTTAGCCGGAACGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
rJMFF034I21+ CTTAGCCGGAATGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
rJMFF040E12+ CTTAGCCGGAATGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
rJMFF046H18+ GCCGGAATGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
                      ____________________________________________________________
consensus CTTAGCCGGAATGTGGTGGAAAGGATGAACACTAGCGGTGCTGATGGTCGGGACTTTCTC
 
. : . : . : . : . : . :
rJMSF001O08+ TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
rJMFF034I21+ TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
rJMFF040E12+ TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
rJMFF046H18+ TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
                      ____________________________________________________________
consensus TCTGGACTTCCATCTCTAGGATCGCTCGAGTACTGAGATTCACCTTTACCTTTGGTATCT
 
. : . : . : . : . : . :
rJMSF001O08+ TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
rJMFF034I21+ TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
rJMFF040E12+ TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
rJMFF046H18+ TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
                      ____________________________________________________________
consensus TCCAAAGATCTGCCTCATATCATATCCCCACCAGACTTCATTAGCTTTGGTCTGTCTGTC
 
. : . : . : . : . : . :
rJMSF001O08+ ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
rJMFF034I21+ ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
rJMFF040E12+ ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
rJMFF046H18+ ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
                      ____________________________________________________________
consensus ACAGTCTCCCATTTGTATCCTGTAGTTTTCTTTTGCAATGGTGTTGTAGGAGTTAAGTCT
 
. : . : . : . : . : . :
rJMSF001O08+ CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCTTTTAGATTGCGAATCTGAAC
rJMFF034I21+ CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCCTTTAGATTGCGAATCTGAAC
rJMFF040E12+ CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCCTTTAGATTGCGAATCTGAAC
rJMFF046H18+ CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCTTTTAGATTGCGAATCTGAAC
                      ____________________________________________________________
consensus CCTTTTACTGAAGAGGTTAAGTCTCCACGATCAGACATCTTTTAGATTGCGAATCTGAAC
 
. : . : . : . : . : . :
rJMSF001O08+ CTCCTGAAATTTCTTGCTGTT
rJMFF034I21+ CTCCTGAA
rJMFF040E12+ CTCCTGAAATTTCTTGCTGTT
rJMFF046H18+ CTCCTGAAATTTCTTGCTGTTTCTTCAAAACCTTAAATATAAATTGCTTATCTTGCATTG
                      ____________________________________________________________
consensus CTCCTGAAATTTCTTGCTGTTTCTTCAAAACCTTAAATATAAATTGCTTATCTTGCATTG