Contig 001203:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045D17Sequence647004941 (5)ref|XP_009610243.1|1e-89PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen605001203 (5)gb|AAB38796.1|8e-44farnesyltransferase beta subunit, partial [Nicotiana glutinosa]
JMFF045N15Sequence647004941 (5)ref|XP_009610243.1|3e-85PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen578001203 (5)gb|AAB38796.1|1e-43farnesyltransferase beta subunit, partial [Nicotiana glutinosa]
JMSF001H10Sequence481004941 (5)ref|XP_009610243.1|1e-57PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen683001203 (5)ref|XP_010315876.1|1e-49PREDICTED: farnesyl protein transferase subunit B isoform X2 [Solanum lycopersi
JMSF004L07Sequence385004941 (5)emb|CDI30234.1|2e-35protein farnesyltransferase beta-subunit [Nicotiana tabacum]381001203 (5)gb|AAB38796.1|2e-38farnesyltransferase beta subunit, partial [Nicotiana glutinosa]
JMSF033A16Sequence606004941 (5)ref|XP_009610243.1|7e-54PREDICTED: protein farnesyltransferase subunit beta isoform X3 [Nicotiana tomen701001203 (5)gb|AAB69757.1|9e-66farnesyl-protein transferase beta subunit [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF033A16+                       AGGAGTGGAAGGTGGATTCCAAGGGAGAACAAATAAGTTGGTAGATG
                      ____________________________________________________________
consensus                          AGGAGTGGAAGGTGGATTCCAAGGGAGAACAAATAAGTTGGTAGATG
 
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rJMSF033A16+          GNTGCTATTCATTTTGGCAGGGTGGAGTGGCTGCGATATTACAAAGATTGCATTTGAATG
rJMSF001H10+                        TGGCAGGGTGGAGTGGCTGCGATATTACAAAGATTGCATTTGAATG
                      ____________________________________________________________
consensus             GNTGCTATTCATTTTGGCAGGGTGGAGTGGCTGCGATATTACAAAGATTGCATTTGAATG
 
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rJMSF033A16+          CTATGGAGTGTGACTCTGTCACAGGGAGTGACCATGGTTCTGTTGCATCTAGTTCCTCTG
rJMSF001H10+          CTATGGAGTGTGACTCTGTCACAGGGAGTGACCATGGTTCTGTTGCATCTAGTTCCTCTG
                      ____________________________________________________________
consensus             CTATGGAGTGTGACTCTGTCACAGGGAGTGACCATGGTTCTGTTGCATCTAGTTCCTCTG
 
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rJMSF033A16+          ATGGAGAAGACCACCTTGAAGGAACATCCACTCACACGGATGAATCTTTTCATCTCAGGC
rJMSF001H10+          ATGGAGAAGACCACCTTGAAGGAACATCCACTCACACGGATGAATCTTTTCATCTCAGGC
rJMFF045N15+                                                                 CAGGC
rJMFF045D17+                                                                 CAGGC
                      ____________________________________________________________
consensus             ATGGAGAAGACCACCTTGAAGGAACATCCACTCACACGGATGAATCTTTTCATCTCAGGC
 
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rJMSF033A16+          AGGGAGCTGGACCAGGCCATGATGCTTTTGAACCAGTGAAGAACTTGAACAACATTGGTT
rJMSF001H10+          AGGGAGCTGGACCAGGCCATGATGCTTTTGAACCAGTGAAGAACTTGAACAACATTGGTT
rJMFF045N15+          AGGGAGCTGGACCAGGCCATGATGCTTTTGAACCAGTGAAGAACTTGAACAACATTGGTT
rJMFF045D17+          AGGGAGCTGGACCAGGCCATGATGCTTNTGAACCAGTGAAGAACTTGAACAACATTGGTT
                      ____________________________________________________________
consensus             AGGGAGCTGGACCAGGCCATGATGCTTTTGAACCAGTGAAGAACTTGAACAACATTGGTT
 
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rJMSF033A16+          ATGAGTTTATCAATGGACATGCTTCTAGGAGACCTCTATTTGACAACCTAAATTTGCAAC
rJMSF001H10+          ATGAGTTTATCAATGGACATGCTTNTAGGAGACCTCTATTTGACAACCTAAATTTGCAAC
rJMFF045N15+          ATGAGTTTATCAATGGACATGCTTCTAGGAGACCTCTATTTGACAACCTAAATTTGCAAC
rJMSF004L07+                                           CTCTATTTGACAACCTAAATTTGCAAC
rJMFF045D17+          ATGAGTTTATCAATGGACATGCTTCTAGGAGACCTCTATTTGACAACCTAAATTTGCAAC
                      ____________________________________________________________
consensus             ATGAGTTTATCAATGGACATGCTTCTAGGAGACCTCTATTTGACAACCTAAATTTGCAAC
 
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rJMSF033A16+          GCTACATCATACTTTGCTCACAGGTAGAGGGCGGTTTCAGGGACAAACCAGGGAAGGCCA
rJMSF001H10+          GCTACATCATACTTTGCTCACAGGTAGAGGGCGGTTTCAGGGACAAACCAGGGAAGGCCA
rJMFF045N15+          GCTACATCATACTTTGCTCACAGGTAGAGGGCGGTTTCAGGGACAAACCAGGGAAGGCCA
rJMSF004L07+          GCTACATCATACTTTGCTCACAGGTAGAGGGCGGTTTCAGGGACAAACCAGGGAAGGCCA
rJMFF045D17+          GCTACATCATACTTTGCTCACAGGTAGAGGGCGGTTTCAGGGACAAACCAGGGAAGGCCA
                      ____________________________________________________________
consensus             GCTACATCATACTTTGCTCACAGGTAGAGGGCGGTTTCAGGGACAAACCAGGGAAGGCCA
 
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rJMSF033A16+          GAGATCACTACCATACATGTTACTGCCTGAGTGGTCTTTCGATTTCTCAGTATAGCTGTG
rJMSF001H10+          GAGATCACTACCATACATGTTACTGCCTGAGTGGTCTTTCGATTTCTCAGTATAGCTGTG
rJMFF045N15+          GAGATCACTACCATACATGTTACTGCCTGAGTGGTCTTTCGATTTCTCAGTATAGCTGTG
rJMSF004L07+          GAGATCACTACCATACATGTTACTGCCTGAGTGGTCTTTCGATTTCTCAGTATAGCTGTG
rJMFF045D17+          GAGATCACTACCATACATGTTACTGCCTGAGTGGTCTTTCGATTTCTCAGTATAGCTGTG
                      ____________________________________________________________
consensus             GAGATCACTACCATACATGTTACTGCCTGAGTGGTCTTTCGATTTCTCAGTATAGCTGTG
 
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rJMSF033A16+          CAAGTGATTTTGGCACTCCGCCTTTGCCCCGGGACATCTTGGGTCCTTATTCCAACAACC
rJMSF001H10+          CAAGTGATTTTGGCACTCCGCCTTTGCCCCGGGACATCTTGGGTCCTTATTCCAACAACC
rJMFF045N15+          CAAGTGATTTTGGCACTCCGCCTTTGCCCCGGGACATCTTGGGTCCTTATTCCAACAACC
rJMSF004L07+          CAAGTGATTTTGGCACTCCGCCTTTGCCCCGGGACATCTTGGGTCCTTATTCCAACAACC
rJMFF045D17+          CAAGTGATTTTGGCACTCCGCCTTTGCCCCGGGACATCTTGGGTCCTTATTCCAACAACC
                      ____________________________________________________________
consensus             CAAGTGATTTTGGCACTCCGCCTTTGCCCCGGGACATCTTGGGTCCTTATTCCAACAACC
 
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rJMSF033A16+          TAGTCGAACGGATTCACCCTCTATTCAACATTGTCATAGATTGTTACTATGAGGCTCGTG
rJMSF001H10+          TAGTCGAACGGATTCACCCTCTATTCAACATTGTCATAGATTGTTACTATGAGGCTCGTG
rJMFF045N15+          TAGTCGAACGGATTCACCCTCTATTCAACATTGTCATAGATTGTTACTATGAGGCTCGTG
rJMSF004L07+          TAGTCGAACGGATTCACCCTCTATTCAACATTGTCATAGATTGTTACTATGAGGCTCGTG
rJMFF045D17+          TAGTCGAACGGATTCACCCTCTATTCAACATTGTCATAGATTGTTACTATGAGGCTCGTG
                      ____________________________________________________________
consensus             TAGTCGAACGGATTCACCCTCTATTCAACATTGTCATAGATTGTTACTATGAGGCTCGTG
 
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rJMSF033A16+          AATTCTTCTCAGGTCTGTGAGGATCTTTTCCCTTTTTTTTTGTACCATAACATGTACTCC
rJMSF001H10+          AATTNTTCTCAGGTCTGTGAGGATCTTTTCCCTTTTTTTTTGTACCATAACATGTACTCC
rJMFF045N15+          AATTCTTCTCAGGTCTGTGAGGATCTTTTCCCTTTTTTTTTGTACCATAACATGTACTCC
rJMSF004L07+          AATTCTTCTCAGGTCTGTGAGGATCTTTTCCCTTTTTTTTTGTACCATAACATGTACTCC
rJMFF045D17+          AATTCTTCTCAGGTCTGTGAGGATCTTTTCCCTTTTTTTTTGTACCATAACATGTACTCC
                      ____________________________________________________________
consensus             AATTCTTCTCAGGTCTGTGAGGATCTTTTCCCTTTTTTTTTGTACCATAACATGTACTCC
 
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rJMSF033A16+          GTACAATGGTTTCCCTCCAGTGTCCTTCCACAGCAGCGCCGTGAGGGAAGGATT      
rJMSF001H10+          GTACAATGGTTTCCCTCCAGTGTCCTTCCACAGCAGCGCCGTGAGGGAAGGATTTGCAGT
rJMFF045N15+          GTACAATGGTTTCCCTCCAGTGTCCTTCCACAGCAGCGCCGTGAGGGAAGGATTTGCAGT
rJMSF004L07+          GTACAATGGTTTCCCTCCAGTGTCCTTCCACAGCAGCGCCGTGAGGGAAGGATT      
rJMFF045D17+          GTACAATGGTTTCCCTCCAGTGTCCTTCCACAGCAGCGCCGTGAGGGAAGGATTTGCAGT
                      ____________________________________________________________
consensus             GTACAATGGTTTCCCTCCAGTGTCCTTCCACAGCAGCGCCGTGAGGGAAGGATTTGCAGT
 
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rJMSF001H10+          GTTTATTATAGTGAAATTACTTGTTCGAAATCCTTCC                       
rJMFF045N15+          GTTTATTATAGTGAAATTACTTGTTCGAAATCCTTCCTATATATATTTTTTTTTCCATCA
rJMFF045D17+          GTTTATTATAGTGAAATTACTTGTTCGAAATCCTTCCTATATATATTTTTTTTTCCATCA
                      ____________________________________________________________
consensus             GTTTATTATAGTGAAATTACTTGTTCGAAATCCTTCCTATATATATTTTTTTTTCCATCA
 
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rJMFF045N15+          AATTATAGGCGCCGTACTACATCTTTTTGTGCC                           
rJMFF045D17+          AATAATAGGCGCCGTACTACATCTTTTTGTGCCAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             AATTATAGGCGCCGTACTACATCTTTTTGTGCCAAAAAAAAAAAAAAAACTCTCCAGGGT