Contig 001197:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001A15Sequence394001197 (4)ref|XP_009470923.1|5e-21PREDICTED: CCR4-NOT transcription complex subunit 11 [Nipponia nippon]
JMFF018N19Sequence572013350 (5)ref|XP_009762552.1|8e-69PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2 [Nicotiana sylv760001197 (4)ref|XP_009762550.1|4e-123PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X1 [Nicotiana sylv
JMFF025O15Sequence631013350 (5)ref|XP_009597617.1|5e-92PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2 [Nicotiana tome766001197 (4)ref|XP_009762550.1|5e-125PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X1 [Nicotiana sylv
JMFF044C17Sequence634013350 (5)ref|XP_009762552.1|1e-79PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2 [Nicotiana sylv621001197 (4)ref|XP_006349655.1|4e-79PREDICTED: CCR4-NOT transcription complex subunit 11-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF018N19+                                                    TATGAGCTTTTGTGGGAT
rJMFF025O15+                                              TACAATTATGAGCTTTTGTGGGAT
                      ____________________________________________________________
consensus                                                 TACAATTATGAGCTTTTGTGGGAT
 
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rJMFF018N19+          CATGGAATGTGTGCTGATACTAGAGGGGCAGCAATGAGAGATTTGATTGCAAAAGCTTTG
rJMFF025O15+          CATGGAATGTGTGCTGATACTAGAGGGGCAGCAATGAGAGATTTGATTGCAAAAGCTTTG
                      ____________________________________________________________
consensus             CATGGAATGTGTGCTGATACTAGAGGGGCAGCAATGAGAGATTTGATTGCAAAAGCTTTG
 
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rJMFF018N19+          AAGGGACCACTTGCTCCTACCCAACAAGAGGAAGTTCTACTGGAGTTGGCAAATGACCCA
rJMFF025O15+          AAGGGACCACTTGCTCCTACCCAACAAGAGGAAGTTCTACTGGAGTTGGCAAATGACCCA
                      ____________________________________________________________
consensus             AAGGGACCACTTGCTCCTACCCAACAAGAGGAAGTTCTACTGGAGTTGGCAAATGACCCA
 
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rJMFF018N19+          AAGCTTGTATACCGTTGTGGTTTGACACCAAGAAAGCTTCCAGAGCTCGTTGAGAACAAT
rJMFF025O15+          AAGCTTGTATACCGTTGTGGTTTGACACCAAGAAAGCTTCCAGAGCTCGTTGAGAACAAT
rJMFF044C17+                                                TCCAGAGCTCGTGNAGAACAAT
                      ____________________________________________________________
consensus             AAGCTTGTATACCGTTGTGGTTTGACACCAAGAAAGCTTCCAGAGCTCGTTGAGAACAAT
 
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rJMFF018N19+          CCTGTTATTGCAGTAGAAGTTCTTGTGAAGTTAGTGAATTCACCTGAGATTGCCGAATAC
rJMFF025O15+          CCTGTTATTGCAGTAGAAGTTCTTGTGAAGTTAGTGAATTCACCTGAGATTGCCGAATAC
rJMFF044C17+          CCTGTTATTGCAGTAGAAGTTCTTGTGAAGTTAGTGAATTCACCTGAGATTGCCGAATAC
                      ____________________________________________________________
consensus             CCTGTTATTGCAGTAGAAGTTCTTGTGAAGTTAGTGAATTCACCTGAGATTGCCGAATAC
 
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rJMFF018N19+          TTTACAGTTCTTGTCAATATGGAAATGAGTCTTCATTCTATGGAAGTAGTTAACAGGCTC
rJMFF025O15+          TTTACAGTTCTTGTCAATATGGAAATGAGTCTTCATTCTATGGAAGTAGTTAACAGGCTC
rJMFF044C17+          TTTACAGTTCTTGTCAATATGGAAATGAGTCTTCATTCTATGGAAGTAGTTAACAGGCTC
                      ____________________________________________________________
consensus             TTTACAGTTCTTGTCAATATGGAAATGAGTCTTCATTCTATGGAAGTAGTTAACAGGCTC
 
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rJMFF018N19+          ACCCAAGCAGTTGATTTGCCAACTGAATTCATACATATGTATATCACCAACTGTATATCT
rJMFF025O15+          ACCCAAGCAGTTGATTTGCCAACTGAATTCATACATATGTATATCACCAACTGTATATCT
rJMFF044C17+          ACCCAAGCAGTTGATTTGCCAACTGAATTCATACATATGTATATCACCAACTGTATATCT
                      ____________________________________________________________
consensus             ACCCAAGCAGTTGATTTGCCAACTGAATTCATACATATGTATATCACCAACTGTATATCT
 
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rJMFF018N19+          TCCTGTGAGAATATCAAGGATAGGTATATGCAGAACAGA-CTTGTAAGGCTTGTCTGTGT
rJMFF025O15+          TCCTGTGAGAATATCAAGGATAGGTATATGCAGAACAGA-CTTGTAAGGCTTGTCTGTGT
rJMFF001A15+              GTGAGAATATCAAGGATAGGTATATGCAGANCAGACCTNGTAAGNCTNGTCNGTGT
rJMFF044C17+          TCCTGTGAGAATATCAAGGATAGGTATATGCAGAACAGA-CTTGTAAGGCTTGTCTGTGT
                      ____________________________________________________________
consensus             TCCTGTGAGAATATCAAGGATAGGTATATGCAGAACAGA-CTTGTAAGGCTTGTCTGTGT
 
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rJMFF018N19+          CTTCCTGCAGAGCTTGATCCGGAATAAAATAATTGATGTTAAAGATCTGTTTATTGAAGT
rJMFF025O15+          CTTCCTGCAGAGCTTGATCCGGAATAAAATAATTGATGTTAAAGATCTGTTTATTGAAGT
rJMFF001A15+          CTTCCTGCAGAGCNTGATCCGGAATAAAATAATTGATGTTAAAGATCTGTTTATTGAAGT
rJMFF044C17+          CTTCCTGCAGAGCTTGATCCGGAATAAAATAATTGATGTTAAAGATCTGTTTATTGAAGT
                      ____________________________________________________________
consensus             CTTCCTGCAGAGCTTGATCCGGAATAAAATAATTGATGTTAAAGATCTGTTTATTGAAGT
 
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rJMFF018N19+          CCAAGCGTTTTGTATCGAGTTCTCAAGGATTAGGGAAGCAGCTGGGTTATTTAGATTGCT
rJMFF025O15+          CCAAGCGTTTTGTATCGAGTTCTCAAGGATTAGGGAAGCAGCTGGGTTATTTAGATTGCT
rJMFF001A15+          CCAAGCGTTTTGTATCGAGTTCTCAAGGATTAGGGAAGCAGCTGGGTTATTTAGATTGCT
rJMFF044C17+          CCAAGCGTTTTGTATCGAGTTCTCAAGGATTAGGGAAGCAGCTGGGTTATTTAGATTGCT
                      ____________________________________________________________
consensus             CCAAGCGTTTTGTATCGAGTTCTCAAGGATTAGGGAAGCAGCTGGGTTATTTAGATTGCT
 
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rJMFF018N19+          TAAAAACTTAGAAGAAGGAAAGCAGCCGGATTATGTAGACTGCTTAAAATCTTAGAAGTA
rJMFF025O15+          TAAAAACTTAGAAGAAGGAAAGCAGCCGGATTATGTAGACTGCTTAAAATCTTAGAAGTA
rJMFF001A15+          TAAAAACTTAGAAGAAGGAAAGCAGCCGGATTATGTAGACTGCTTAAAATCTTAGAAGTA
rJMFF044C17+          TAAAAACTTAGAAGAAGGAAAGCAGCCGGATTATGTAGACTGCTTAAAATCTTAGAAGTA
                      ____________________________________________________________
consensus             TAAAAACTTAGAAGAAGGAAAGCAGCCGGATTATGTAGACTGCTTAAAATCTTAGAAGTA
 
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rJMFF018N19+          GGAACCTTAGAATAGCTGCATCTGTCTTTCCTTCATTTCATCACCTTCTATATACTTCTC
rJMFF025O15+          GGAACCTTAGAATAGCTGCATCTGTCTTTCCTTCATTTCATCACCTTCTATATACTTCTC
rJMFF001A15+          GGAACCTTAGAATAGCTGCATCTGTCTTTCCTTCATTTCATCACCTTCTATATACTTCTC
rJMFF044C17+          GGAACCTTAGAATAGCTGCATCTGTCTTTCCTTCATTTCATCACCTTCTATATACTTCTC
                      ____________________________________________________________
consensus             GGAACCTTAGAATAGCTGCATCTGTCTTTCCTTCATTTCATCACCTTCTATATACTTCTC
 
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rJMFF018N19+          TTTGTAGCATATGTACCCATTCCTGTTCTGACCAACATGTATCTTTTTATATCTGGATGA
rJMFF025O15+          TTTGTAGCATATGTACCCATTCCTGTTCTGACCAACATGTATCTTTTTATATCTGGATGA
rJMFF001A15+          TTTGTAGCATATGTACCCATTCCTGTTCTGACCAACATGTATCTTTTTATANNTGGATGA
rJMFF044C17+          TTTGTAGCATATGTACCCATTCCTGTTCTGACCAACATGTATCTTTTTATATCTGGATGA
                      ____________________________________________________________
consensus             TTTGTAGCATATGTACCCATTCCTGTTCTGACCAACATGTATCTTTTTATATCTGGATGA
 
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rJMFF018N19+          TAAGTGTATATCTAGAAGCACTC                                     
rJMFF025O15+          TAAGTGTATATCTAGAAGCACTC                                     
rJMFF001A15+          TAAGTGTATATCTAGAAGCACTC                                     
rJMFF044C17+          TAAGTGTATATCTAGAAGCACTCAATTTTTACCAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TAAGTGTATATCTAGAAGCACTCAATTTTTACCAAAAAAAAAAAAAAAACTCTCCAGGGT