| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018N17 | Sequence | 584 | 005176 (3) | ref|XP_002270073.1| | 9e-92 | PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera] | 791 | 001196 (7) | ref|XP_009788100.1| | 3e-27 | PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Nicotiana sylvestris] |
| JMFF044A06 | Sequence | 626 | 005176 (3) | ref|XP_002270073.1| | 7e-103 | PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera] | 635 | 001196 (7) | |||
| JMFN002A04 | Sequence | 513 | 001196 (7) | ref|XP_011078870.1| | 3e-85 | PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Sesamum indicum] | |||||
| JMFN008I19 | Sequence | 628 | 001196 (7) | ref|XP_011033144.1| | 3e-10 | PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Populus euphratica] | |||||
| JMSF031C13 | Sequence | 506 | 001196 (7) | 445 | 001196 (7) | ||||||
| JMSF032F17 | Sequence | 670 | 005176 (3) | ref|XP_002270073.1| | 7e-111 | PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera] | 751 | 001196 (7) | ref|XP_011033144.1| | 2e-138 | PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Populus euphratica] |
This contig is upended
. : . : . : . : . : . :
rJMSF032F17+ GCATCTTGGATTGTTGTTGGGTGTGGGAGCAC
____________________________________________________________
consensus GCATCTTGGATTGTTGTTGGGTGTGGGAGCAC
. : . : . : . : . : . :
rJMSF032F17+ ATATGCAGGAGCTGAGGAGAGTGAGGTCTGGGATTATGGGTGAGAAGGACAATATGGTGA
____________________________________________________________
consensus ATATGCAGGAGCTGAGGAGAGTGAGGTCTGGGATTATGGGTGAGAAGGACAATATGGTGA
. : . : . : . : . : . :
JMFN002A04- ATT
rJMSF032F17+ CAATGCATGATGTTATGGATGCTCAGTGGGTGTATGATAATTATAGGGATGAGAGTTATT
____________________________________________________________
consensus CAATGCATGATGTTATGGATGCTCAGTGGGTGTATGATAATTATAGGGATGAGAGTTATT
. : . : . : . : . : . :
JMFN002A04- TGAGGAGGGTGATTATGCCGCTGGAAGTACTTCTAACTAGTT-CAAGAGGTTGGTGGTGA
rJMSF032F17+ TGAGGAGGGTGATTATGCCGCTGGAAGTACTTCTAACTAGTTACAAGAGGTTGGTGGTGA
____________________________________________________________
consensus TGAGGAGGGTGATTATGCCGCTGGAAGTACTTCTAACTAGTTACAAGAGGTTGGTGGTGA
. : . : . : . : . : . :
JMFN002A04- AGGATTCTGCCGTGAATGCAATTTGTTATGGTGCGAAGCTGATGATTCCTGGGTTGTTGA
rJMSF032F17+ AGGATTCTGCCGTGAATGCAATTTGTTATGGTGCGAAGCTGATGATTCCTGGGTTGTTGA
____________________________________________________________
consensus AGGATTCTGCCGTGAATGCAATTTGTTATGGTGCGAAGCTGATGATTCCTGGGTTGTTGA
. : . : . : . : . : . :
JMFN002A04- GGTTCGAGAATGATATCGAGGTGGGAGAGGAAGTCGTGTTGATGACGACCAAGGGAGAGG
rJMSF032F17+ GGTTCGAGAATGATATCGAGGTGGGAGAGGAAGTCGTGTTGATGACGACCAAGGGAGAGG
____________________________________________________________
consensus GGTTCGAGAATGATATCGAGGTGGGAGAGGAAGTCGTGTTGATGACGACCAAGGGAGAGG
. : . : . : . : . : . :
JMFN002A04- CCATTGCATTGGGGATTGCGGAAATGACTACATCCGTTATGGCAACTTGTGATCATGGAG
rJMSF032F17+ CCATTGCATTGGGGATTGCGGAAATGACTACATCCGTTATGGCAACTTGTGATCATGGAG
____________________________________________________________
consensus CCATTGCATTGGGGATTGCGGAAATGACTACATCCGTTATGGCAACTTGTGATCATGGAG
. : . : . : . : . : . :
JMFN002A04- TGGTTGCAAAGATTAAGAGGGTGGTGATGGATAGAGACACGTATCCGAGGAAATGGGGTT
rJMSF032F17+ TGGTTGCAAAGATTAAGAGGGTGGTGATGGATAGAGACACGTATCCGAGGAAATGGGGTT
rJMFF018N17+ GAAATGGGGTT
____________________________________________________________
consensus TGGTTGCAAAGATTAAGAGGGTGGTGATGGATAGAGACACGTATCCGAGGAAATGGGGTT
. : . : . : . : . : . :
JMFN002A04- TGGGACCTAGAGCTTCGATGAAGAAGAAATTGATAGCTGATGGGAAGTTGGACAAGCATG
rJMSF032F17+ TGGGACCTAGAGCTTCGATGAAGAAGAAATTGATAGCTGATGGGAAGTTGGACAAGCATG
rJMFF018N17+ TGGGACNTAGAGCTTCGATGAAGAAGAAATTGATAGCTGATGGGAAGTTGGACAAGCATG
____________________________________________________________
consensus TGGGACCTAGAGCTTCGATGAAGAAGAAATTGATAGCTGATGGGAAGTTGGACAAGCATG
. : . : . : . : . : . :
JMFN002A04- GGAAGCCAAACGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
rJMSF032F17+ GGAAGCCAAACGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
JMFN008I19- CGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
rJMFF018N17+ GGAAGCCAAACGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
____________________________________________________________
consensus GGAAGCCAAACGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
. : . : . : . : . : . :
JMFN002A04- GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCAGAGCCAGCAATCACAGAGGGTG
rJMSF032F17+ GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCAGAGCCAGCAATCACAGAGGGTG
JMFN008I19- GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCATAGCCAGCAATCACAGAGGGTG
rJMFF018N17+ GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCAGAGCCAGCAATCACAGAGGGTG
____________________________________________________________
consensus GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCAGAGCCAGCAATCACAGAGGGTG
. : . : . : . : . : . :
JMFN002A04- GTAAGCGGAAATTGGATGAAGGTGATGGAA
rJMSF032F17+ GTAAGCGGAAATTGGATGAAGGTGATGGAAGCCCCGCACAACATGCTGCTAAGAAACCTA
JMFN008I19- GTAAGCGGAAATTGGATGAAGGTGATGGAAGCCCCGCACAACATGCTGCTAAGAAACCTA
rJMFF018N17+ GTAAGCGGAAATTGGATGAAGGTGATGGAAGCCCCGCACAACATGCTGCTAAGAAACCTA
____________________________________________________________
consensus GTAAGCGGAAATTGGATGAAGGTGATGGAAGCCCCGCACAACATGCTGCTAAGAAACCTA
. : . : . : . : . : . :
rJMSF032F17+ AGATATCACAAGTTGAGGAAACTGTGCAAGTGAACGAAACGGACAAGGAGGTG
JMFN008I19- AGATATCACAAGTTGAGGAAACTGTGCAAGTGAACGAAACGGACAAGGAGGTGGAAGTTG
rJMFF018N17+ AGATATCACAAGTTGAGGAAACTGTGCAAGTGAACGAAACGGACAAGGAGGTGGAAGTTG
rJMFF044A06+ CTGTGCAAGTGAACGAAACGGACAAGGAGGTGGAAGTTG
____________________________________________________________
consensus AGATATCACAAGTTGAGGAAACTGTGCAAGTGAACGAAACGGACAAGGAGGTGGAAGTTG
. : . : . : . : . : . :
JMFN008I19- GGATTGAGAAGACTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
rJMFF018N17+ GGATTGAGAAGACTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
rJMSF031C13+ ACTGAGAAGAAGAAGAAGAAAAAGAAAANGNATNGTATGGAAGAGGTNC
JMSF031C13- ACTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
rJMFF044A06+ GGATTGAGAAGNCTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
____________________________________________________________
consensus GGATTGAGAAGACTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
. : . : . : . : . : . :
JMFN008I19- ATTCTGATGAGGAGAAGGAAACCAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
rJMFF018N17+ ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
rJMSF031C13+ ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAANATAAANTAAAACACTGACTCG
JMSF031C13- ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
rJMFF044A06+ ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
____________________________________________________________
consensus ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
. : . : . : . : . : . :
JMFN008I19- GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
rJMFF018N17+ GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
rJMSF031C13+ GCNTCACCCAAGGAGGAGAAGAAAAAGAAGNAGAAAAACAAANATGAACAGNCCGGTGAC
JMSF031C13- GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
rJMFF044A06+ GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
____________________________________________________________
consensus GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
. : . : . : . : . : . :
JMFN008I19- TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
rJMFF018N17+ TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
rJMSF031C13+ TCTTCTTTGCCAGCTGCTGCTGNTGGAACCGNCGATGANTCAAATNGAAGCGAAAAGAAG
JMSF031C13- TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
rJMFF044A06+ TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
____________________________________________________________
consensus TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
. : . : . : . : . : . :
JMFN008I19- AAAGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
rJMFF018N17+ AAGGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
rJMSF031C13+ AAAGAGAANAAGAAGANGAAAAAGNACAANGAAGCCGANGAGGAGTAGNGGCTGCTCAAT
JMSF031C13- AAAGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
rJMFF044A06+ AAAGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
____________________________________________________________
consensus AAAGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
. : . : . : . : . : . :
JMFN008I19- TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
rJMFF018N17+ TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
rJMSF031C13+ TTTGGNCCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTACTCTG
JMSF031C13- TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
rJMFF044A06+ TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
____________________________________________________________
consensus TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
. : . : . : . : . : . :
JMFN008I19- TTGGTCTGCTAA-GACATGTATGTCTGCTCACTTTTATTC
rJMFF018N17+ TTGGTCTGTTAA-GACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
rJMSF031C13+ TTGNTCTGTTAACGACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
JMSF031C13- TTGGTCTGTTAA-GACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
rJMFF044A06+ TTGGTCTGTTAA-GACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
____________________________________________________________
consensus TTGGTCTGTTAA-GACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
. : . : . : . : . : . :
rJMFF018N17+ TCAGTTTTATGAT-CTGTCTGTCTTATTTACTTCCAGTTAAGTTCTTGGGGATTTTTCAA
rJMSF031C13+ TCAGTTTTATGATCCTGTCTGTCTTATTTACTTCCA
JMSF031C13- TCAGTTTTATGAT-CTGTCTGTCTTATTTACTTCCAGTTAAGTTCTTGGGGATTTTTCAA
rJMFF044A06+ TCAGTTTTATGAT-CTGTCTGTCTTATTTACTTCCAGTTAAGTTCTTGGGGATTTTTCAA
____________________________________________________________
consensus TCAGTTTTATGAT-CTGTCTGTCTTATTTACTTCCAGTTAAGTTCTTGGGGATTTTTCAA
. : . : . : . : . : . :
rJMFF018N17+ ACTT
JMSF031C13- ACTTGAATTACTGAGAGATGTTATCCTGGTT
rJMFF044A06+ ACTTGAATTACTGAGAGATGTTATCCTGGTTCATATGTTTTTTTGTTGTTGTTTCTCTAC
____________________________________________________________
consensus ACTTGAATTACTGAGAGATGTTATCCTGGTTCATATGTTTTTTTGTTGTTGTTTCTCTAC
. : . : . : . : . : . :
rJMFF044A06+ TCCAGCATTCTATAAATATATATCCCGTGTTTTACAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus TCCAGCATTCTATAAATATATATCCCGTGTTTTACAAAAAAAAAAAAAACTCTCCAGGGT