Contig 001196:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018N17Sequence584005176 (3)ref|XP_002270073.1|9e-92PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]791001196 (7)ref|XP_009788100.1|3e-27PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Nicotiana sylvestris]
JMFF044A06Sequence626005176 (3)ref|XP_002270073.1|7e-103PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]635001196 (7)
JMFN002A04Sequence513001196 (7)ref|XP_011078870.1|3e-85PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Sesamum indicum]
JMFN008I19Sequence628001196 (7)ref|XP_011033144.1|3e-10PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Populus euphratica]
JMSF031C13Sequence506001196 (7)445001196 (7)
JMSF032F17Sequence670005176 (3)ref|XP_002270073.1|7e-111PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]751001196 (7)ref|XP_011033144.1|2e-138PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF032F17+ GCATCTTGGATTGTTGTTGGGTGTGGGAGCAC
                      ____________________________________________________________
consensus GCATCTTGGATTGTTGTTGGGTGTGGGAGCAC
 
. : . : . : . : . : . :
rJMSF032F17+ ATATGCAGGAGCTGAGGAGAGTGAGGTCTGGGATTATGGGTGAGAAGGACAATATGGTGA
                      ____________________________________________________________
consensus ATATGCAGGAGCTGAGGAGAGTGAGGTCTGGGATTATGGGTGAGAAGGACAATATGGTGA
 
. : . : . : . : . : . :
JMFN002A04- ATT
rJMSF032F17+ CAATGCATGATGTTATGGATGCTCAGTGGGTGTATGATAATTATAGGGATGAGAGTTATT
                      ____________________________________________________________
consensus CAATGCATGATGTTATGGATGCTCAGTGGGTGTATGATAATTATAGGGATGAGAGTTATT
 
. : . : . : . : . : . :
JMFN002A04- TGAGGAGGGTGATTATGCCGCTGGAAGTACTTCTAACTAGTT-CAAGAGGTTGGTGGTGA
rJMSF032F17+ TGAGGAGGGTGATTATGCCGCTGGAAGTACTTCTAACTAGTTACAAGAGGTTGGTGGTGA
                      ____________________________________________________________
consensus TGAGGAGGGTGATTATGCCGCTGGAAGTACTTCTAACTAGTTACAAGAGGTTGGTGGTGA
 
. : . : . : . : . : . :
JMFN002A04- AGGATTCTGCCGTGAATGCAATTTGTTATGGTGCGAAGCTGATGATTCCTGGGTTGTTGA
rJMSF032F17+ AGGATTCTGCCGTGAATGCAATTTGTTATGGTGCGAAGCTGATGATTCCTGGGTTGTTGA
                      ____________________________________________________________
consensus AGGATTCTGCCGTGAATGCAATTTGTTATGGTGCGAAGCTGATGATTCCTGGGTTGTTGA
 
. : . : . : . : . : . :
JMFN002A04- GGTTCGAGAATGATATCGAGGTGGGAGAGGAAGTCGTGTTGATGACGACCAAGGGAGAGG
rJMSF032F17+ GGTTCGAGAATGATATCGAGGTGGGAGAGGAAGTCGTGTTGATGACGACCAAGGGAGAGG
                      ____________________________________________________________
consensus GGTTCGAGAATGATATCGAGGTGGGAGAGGAAGTCGTGTTGATGACGACCAAGGGAGAGG
 
. : . : . : . : . : . :
JMFN002A04- CCATTGCATTGGGGATTGCGGAAATGACTACATCCGTTATGGCAACTTGTGATCATGGAG
rJMSF032F17+ CCATTGCATTGGGGATTGCGGAAATGACTACATCCGTTATGGCAACTTGTGATCATGGAG
                      ____________________________________________________________
consensus CCATTGCATTGGGGATTGCGGAAATGACTACATCCGTTATGGCAACTTGTGATCATGGAG
 
. : . : . : . : . : . :
JMFN002A04- TGGTTGCAAAGATTAAGAGGGTGGTGATGGATAGAGACACGTATCCGAGGAAATGGGGTT
rJMSF032F17+ TGGTTGCAAAGATTAAGAGGGTGGTGATGGATAGAGACACGTATCCGAGGAAATGGGGTT
rJMFF018N17+ GAAATGGGGTT
                      ____________________________________________________________
consensus TGGTTGCAAAGATTAAGAGGGTGGTGATGGATAGAGACACGTATCCGAGGAAATGGGGTT
 
. : . : . : . : . : . :
JMFN002A04- TGGGACCTAGAGCTTCGATGAAGAAGAAATTGATAGCTGATGGGAAGTTGGACAAGCATG
rJMSF032F17+ TGGGACCTAGAGCTTCGATGAAGAAGAAATTGATAGCTGATGGGAAGTTGGACAAGCATG
rJMFF018N17+ TGGGACNTAGAGCTTCGATGAAGAAGAAATTGATAGCTGATGGGAAGTTGGACAAGCATG
                      ____________________________________________________________
consensus TGGGACCTAGAGCTTCGATGAAGAAGAAATTGATAGCTGATGGGAAGTTGGACAAGCATG
 
. : . : . : . : . : . :
JMFN002A04- GGAAGCCAAACGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
rJMSF032F17+ GGAAGCCAAACGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
JMFN008I19- CGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
rJMFF018N17+ GGAAGCCAAACGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
                      ____________________________________________________________
consensus GGAAGCCAAACGAGAAAACACCAACTGAGTGGTTGAGGAATGTTGTTTTGCCCACCGGAG
 
. : . : . : . : . : . :
JMFN002A04- GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCAGAGCCAGCAATCACAGAGGGTG
rJMSF032F17+ GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCAGAGCCAGCAATCACAGAGGGTG
JMFN008I19- GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCATAGCCAGCAATCACAGAGGGTG
rJMFF018N17+ GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCAGAGCCAGCAATCACAGAGGGTG
                      ____________________________________________________________
consensus GGGATTCTATGGTTGCTCAGCTTGCTGCTACTGAGCCAGAGCCAGCAATCACAGAGGGTG
 
. : . : . : . : . : . :
JMFN002A04- GTAAGCGGAAATTGGATGAAGGTGATGGAA
rJMSF032F17+ GTAAGCGGAAATTGGATGAAGGTGATGGAAGCCCCGCACAACATGCTGCTAAGAAACCTA
JMFN008I19- GTAAGCGGAAATTGGATGAAGGTGATGGAAGCCCCGCACAACATGCTGCTAAGAAACCTA
rJMFF018N17+ GTAAGCGGAAATTGGATGAAGGTGATGGAAGCCCCGCACAACATGCTGCTAAGAAACCTA
                      ____________________________________________________________
consensus GTAAGCGGAAATTGGATGAAGGTGATGGAAGCCCCGCACAACATGCTGCTAAGAAACCTA
 
. : . : . : . : . : . :
rJMSF032F17+ AGATATCACAAGTTGAGGAAACTGTGCAAGTGAACGAAACGGACAAGGAGGTG
JMFN008I19- AGATATCACAAGTTGAGGAAACTGTGCAAGTGAACGAAACGGACAAGGAGGTGGAAGTTG
rJMFF018N17+ AGATATCACAAGTTGAGGAAACTGTGCAAGTGAACGAAACGGACAAGGAGGTGGAAGTTG
rJMFF044A06+ CTGTGCAAGTGAACGAAACGGACAAGGAGGTGGAAGTTG
                      ____________________________________________________________
consensus AGATATCACAAGTTGAGGAAACTGTGCAAGTGAACGAAACGGACAAGGAGGTGGAAGTTG
 
. : . : . : . : . : . :
JMFN008I19- GGATTGAGAAGACTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
rJMFF018N17+ GGATTGAGAAGACTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
rJMSF031C13+ ACTGAGAAGAAGAAGAAGAAAAAGAAAANGNATNGTATGGAAGAGGTNC
JMSF031C13- ACTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
rJMFF044A06+ GGATTGAGAAGNCTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
                      ____________________________________________________________
consensus GGATTGAGAAGACTGAGAAGAAGAAGAAGAAAAAGAAAAAGGATGGTATGGAAGAGGTAC
 
. : . : . : . : . : . :
JMFN008I19- ATTCTGATGAGGAGAAGGAAACCAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
rJMFF018N17+ ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
rJMSF031C13+ ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAANATAAANTAAAACACTGACTCG
JMSF031C13- ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
rJMFF044A06+ ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
                      ____________________________________________________________
consensus ATTCTGATGAGGAGAAGGAAAAGAAGGAAAAGAAGAAAGATAAAGTAAAA-ACTGACTCG
 
. : . : . : . : . : . :
JMFN008I19- GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
rJMFF018N17+ GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
rJMSF031C13+ GCNTCACCCAAGGAGGAGAAGAAAAAGAAGNAGAAAAACAAANATGAACAGNCCGGTGAC
JMSF031C13- GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
rJMFF044A06+ GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
                      ____________________________________________________________
consensus GCATCACCCAAGGAGGAGAAGAAAAAGAAGAAGAAAAACAAAGATGAACAGAACGGTGAC
 
. : . : . : . : . : . :
JMFN008I19- TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
rJMFF018N17+ TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
rJMSF031C13+ TCTTCTTTGCCAGCTGCTGCTGNTGGAACCGNCGATGANTCAAATNGAAGCGAAAAGAAG
JMSF031C13- TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
rJMFF044A06+ TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
                      ____________________________________________________________
consensus TCTTCTTTGCCAGCTGCTGCTGGTGGAACCGACGATGAATCAAATAGAAGCGAAAAGAAG
 
. : . : . : . : . : . :
JMFN008I19- AAAGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
rJMFF018N17+ AAGGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
rJMSF031C13+ AAAGAGAANAAGAAGANGAAAAAGNACAANGAAGCCGANGAGGAGTAGNGGCTGCTCAAT
JMSF031C13- AAAGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
rJMFF044A06+ AAAGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
                      ____________________________________________________________
consensus AAAGAGAAGAAGAAGAAGAAAAAGAACAAAGAAGCCGAAGAGGAGTAGAGGCTGCTCAAT
 
. : . : . : . : . : . :
JMFN008I19- TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
rJMFF018N17+ TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
rJMSF031C13+ TTTGGNCCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTACTCTG
JMSF031C13- TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
rJMFF044A06+ TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
                      ____________________________________________________________
consensus TTTGGACCTGGTTGTGACAACTTCAATTCTACCTAAGTGTTGCCAAATTGTACTA-TCTG
 
. : . : . : . : . : . :
JMFN008I19- TTGGTCTGCTAA-GACATGTATGTCTGCTCACTTTTATTC
rJMFF018N17+ TTGGTCTGTTAA-GACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
rJMSF031C13+ TTGNTCTGTTAACGACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
JMSF031C13- TTGGTCTGTTAA-GACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
rJMFF044A06+ TTGGTCTGTTAA-GACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
                      ____________________________________________________________
consensus TTGGTCTGTTAA-GACATGTATGTCTGCTCACTTTTATTCTTCATTTCTGAATTGGTAGC
 
. : . : . : . : . : . :
rJMFF018N17+ TCAGTTTTATGAT-CTGTCTGTCTTATTTACTTCCAGTTAAGTTCTTGGGGATTTTTCAA
rJMSF031C13+ TCAGTTTTATGATCCTGTCTGTCTTATTTACTTCCA
JMSF031C13- TCAGTTTTATGAT-CTGTCTGTCTTATTTACTTCCAGTTAAGTTCTTGGGGATTTTTCAA
rJMFF044A06+ TCAGTTTTATGAT-CTGTCTGTCTTATTTACTTCCAGTTAAGTTCTTGGGGATTTTTCAA
                      ____________________________________________________________
consensus TCAGTTTTATGAT-CTGTCTGTCTTATTTACTTCCAGTTAAGTTCTTGGGGATTTTTCAA
 
. : . : . : . : . : . :
rJMFF018N17+ ACTT
JMSF031C13- ACTTGAATTACTGAGAGATGTTATCCTGGTT
rJMFF044A06+ ACTTGAATTACTGAGAGATGTTATCCTGGTTCATATGTTTTTTTGTTGTTGTTTCTCTAC
                      ____________________________________________________________
consensus ACTTGAATTACTGAGAGATGTTATCCTGGTTCATATGTTTTTTTGTTGTTGTTTCTCTAC
 
. : . : . : . : . : . :
rJMFF044A06+ TCCAGCATTCTATAAATATATATCCCGTGTTTTACAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus TCCAGCATTCTATAAATATATATCCCGTGTTTTACAAAAAAAAAAAAAACTCTCCAGGGT