Contig 001195:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043K09Sequence642000558 (5)ref|XP_002282510.2|9e-78PREDICTED: protein HOTHEAD [Vitis vinifera] emb|CBI34759.3| unnamed protein prod564001195 (2)gb|KDO63592.1|3e-70hypothetical protein CISIN_1g0081631mg, partial [Citrus sinensis] gb|KDO63593.1|
JMFF043O09Sequence640000558 (5)ref|XP_002282510.2|4e-77PREDICTED: protein HOTHEAD [Vitis vinifera] emb|CBI34759.3| unnamed protein prod606001195 (2)gb|KDO63592.1|4e-70hypothetical protein CISIN_1g0081631mg, partial [Citrus sinensis] gb|KDO63593.1|

Alignment

This contig is upended


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rJMFF043K09+                                                                 CAGCG
rJMFF043O09+                                                                ACAGCG
                      ____________________________________________________________
consensus                                                                   ACAGCG
 
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rJMFF043K09+          TTGCGTGAATGGCATCAGAGTCATCGAATCCATAATCGAATCGAAGCCGTTCGCCAAGTT
rJMFF043O09+          TTGCGTGAATGGCATCAGAGTCATCGAATCCATAATCGAATCGAAGCCGTTCGCCAAGTT
                      ____________________________________________________________
consensus             TTGCGTGAATGGCATCAGAGTCATCGAATCCATAATCGAATCGAAGCCGTTCGCCAAGTT
 
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rJMFF043K09+          CCGGCTCGACAACCTTTCCTGGGAGATCCTCTTGAACATGTCCGCCTCGGCGCCGGTGAA
rJMFF043O09+          CCGGCTCGACAACCTTTCCTGGGAGATCCTCTTGAACATGTCCGCCTCGGCGCCGGTGAA
                      ____________________________________________________________
consensus             CCGGCTCGACAACCTTTCCTGGGAGATCCTCTTGAACATGTCCGCCTCGGCGCCGGTGAA
 
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rJMFF043K09+          CCTGCTGCCCAAGCACACAAACGCCTCAATATCATTGGAGCAGTTCTGTAGAGACAGCGT
rJMFF043O09+          CCTGCTGCCCAAGCACACAAACGCCTCAATATCATTGGAGCAGTTCTGTAGAGACAGCGT
                      ____________________________________________________________
consensus             CCTGCTGCCCAAGCACACAAACGCCTCAATATCATTGGAGCAGTTCTGTAGAGACAGCGT
 
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rJMFF043K09+          GATGACAATCTGGCACTATCATGGAGGTTGCCAGGTCGGCAGAGTTGTTGACCACAATTA
rJMFF043O09+          GATGACAATCTGGCACTATCATGGAGGTTGCCAGGTCGGCAGAGTTGTTGACCACAATTA
                      ____________________________________________________________
consensus             GATGACAATCTGGCACTATCATGGAGGTTGCCAGGTCGGCAGAGTTGTTGACCACAATTA
 
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rJMFF043K09+          TAAGGTTTTCGGAGTTAATAACCTTCGAGTCGTTGATGGATCCACGTTTTATTACTCTCC
rJMFF043O09+          TAAGGTTTTCGGAGTTAATAACCTTCGAGTCGTTGATGGATCCACGTTTTATTACTCTCC
                      ____________________________________________________________
consensus             TAAGGTTTTCGGAGTTAATAACCTTCGAGTCGTTGATGGATCCACGTTTTATTACTCTCC
 
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rJMFF043K09+          TGGGACTAATCCTCAGGCCACTGTTATGATGCTCGGAAGGTACATGGGAGTACAGATATT
rJMFF043O09+          TGGGACTAATCCTCAGGCCACTGTTATGATGCTCGGAAGGTACATGGGAGTACAGATATT
                      ____________________________________________________________
consensus             TGGGACTAATCCTCAGGCCACTGTTATGATGCTCGGAAGGTACATGGGAGTACAGATATT
 
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rJMFF043K09+          GAGGGAAAGACTTGCCAGAAAGAAGTCAAAGTGATGATGCTCTGATCTCGATTTTGTTCT
rJMFF043O09+          GAGGGAAAGACTTGCCAGAAAGAAGTCAAAGTGATGATGCTCTGATCTCGATTTTGTTCT
                      ____________________________________________________________
consensus             GAGGGAAAGACTTGCCAGAAAGAAGTCAAAGTGATGATGCTCTGATCTCGATTTTGTTCT
 
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rJMFF043K09+          ATTTATTGTTCTCTCTTCTTTTTCTTTTTTTTTTTTGGTTGAAAAAAATTAAAGCAGGCT
rJMFF043O09+          ATTTATTGTTCTCTCTTCTTTTTCTTTTTTTTTTTTGGTTGAAAAAAATTAAAGCAGGCT
                      ____________________________________________________________
consensus             ATTTATTGTTCTCTCTTCTTTTTCTTTTTTTTTTTTGGTTGAAAAAAATTAAAGCAGGCT
 
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rJMFF043K09+          TATGTGATGTTGATGTGTCAAAATAACTATGAACTGTATGCATTTCATTGAATAAAATAG
rJMFF043O09+          TATGTGATGTTGATGTGTCAAAATAACTATGAACTGTATGCATTTCATTGAATAAAATAG
                      ____________________________________________________________
consensus             TATGTGATGTTGATGTGTCAAAATAACTATGAACTGTATGCATTTCATTGAATAAAATAG
 
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rJMFF043K09+          AAAAAAGGATTTCTGCAAG                                         
rJMFF043O09+          AAAAAAGGATTTCTGCAAGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AAAAAAGGATTTCTGCAAGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG