| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009P24 | Sequence | 562 | 006032 (6) | ref|XP_004240846.1| | 1e-61 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 754 | 001191 (5) | ref|XP_009778770.1| | 4e-110 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] |
| JMFF021I09 | Sequence | 575 | 006032 (6) | ref|XP_004240846.1| | 2e-62 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 724 | 001191 (5) | ref|XP_009778770.1| | 4e-108 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] |
| JMFF030O03 | Sequence | 540 | 006032 (6) | ref|XP_004240846.1| | 1e-57 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 720 | 001191 (5) | ref|XP_009778770.1| | 6e-105 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] |
| JMFF037H22 | Sequence | 564 | 006032 (6) | ref|XP_004240846.1| | 2e-62 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 772 | 001191 (5) | ref|XP_009778770.1| | 1e-104 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] |
| JMFF043J20 | Sequence | 609 | 006032 (6) | ref|XP_004240846.1| | 4e-62 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 563 | 001191 (5) | ref|XP_009590667.1| | 4e-64 | PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein |
This contig is upended
. : . : . : . : . : . :
rJMFF021I09+ CAATAAGGAC
____________________________________________________________
consensus CAATAAGGAC
. : . : . : . : . : . :
rJMFF021I09+ CAATAAGAAAGTGCCTGAAAAAGAAGTGGATGAGAAGGGATAAAGACATTAGTGTAAGTT
rJMFF030O03+ CAATAAGAAAGTGCCTGAAAAAGAAGTGGATGAGAA-GGATAAAGACATTAGTGTAAGTT
rJMFF037H22+ CAATAAGAAAGTGCCTGAAAAAGAAGTGGATGAGAA-GGATAAAGACATTAGTGTAAGTT
rJMFF009P24+ GGATAAAGACATTAGTGTAAGTT
____________________________________________________________
consensus CAATAAGAAAGTGCCTGAAAAAGAAGTGGATGAGAA-GGATAAAGACATTAGTGTAAGTT
. : . : . : . : . : . :
rJMFF021I09+ TGCTTAAAGTACAGATTGGTCATATTCGTAAAGCATGGAAGCATCCATCAGCTGACAGTT
rJMFF030O03+ TGCTTAAAGTACAGATTGGTCATATTCGTAAAGCATGGAAGCATCCATCAGCTGACAGTT
rJMFF037H22+ TGCTTAAAGTACAGATTGGTCATATTCGTAAAGCATGGAAGCATCCATCAGCTGACAGTT
rJMFF009P24+ TGCTTAAAGTACAGATTGGTCATATTCGTAAAGCATGGAAGCATCCATCAGCTGACAGTT
____________________________________________________________
consensus TGCTTAAAGTACAGATTGGTCATATTCGTAAAGCATGGAAGCATCCATCAGCTGACAGTT
. : . : . : . : . : . :
rJMFF021I09+ TACTAGTTGAGGAGATAGATGTTGGGGAAGCTAAATGTCGACAAGTGGTCAGTGGTCTGG
rJMFF030O03+ TACTAGTTGAGGAGATAGATGTTGGGGAAGCTAAATGTCGACAAGTGGTCAGTGGTCTGG
rJMFF037H22+ TACTAGTTGAGGAGATAGATGTTGGGGAAGCTAAATGTCGACAAGTGGTCAGTGGTCTGG
rJMFF009P24+ TACTAGTTGAGGAGATAGATGTTGGGGAAGCTAAATGTCGACAAGTGGTCAGTGGTCTGG
____________________________________________________________
consensus TACTAGTTGAGGAGATAGATGTTGGGGAAGCTAAATGTCGACAAGTGGTCAGTGGTCTGG
. : . : . : . : . : . :
rJMFF021I09+ CAAAGTATTTCACCCCAGAACAAATGACAAATCGCCTAGTGGTGCTTATCACAAACATGA
rJMFF030O03+ CAAAGTATTTCACCCCAGAACAAATGACAAATCGCCTAGTGGTGCTTATCACAAACATGA
rJMFF037H22+ CAAAGTATTTCACCCCAGAACAAATGACAAATCGCCTAGTGGTGCTTATCACAAACATGA
rJMFF009P24+ CAAAGTATTTCACCCCAGAACAAATGACAAATCGCCTAGTGGTGCTTATCACAAACATGA
rJMFF043J20+ AGTGGTGCTTATCACAAACATGA
____________________________________________________________
consensus CAAAGTATTTCACCCCAGAACAAATGACAAATCGCCTAGTGGTGCTTATCACAAACATGA
. : . : . : . : . : . :
rJMFF021I09+ AACCGTCCAAACTTCGAGATGTGGCATCTGAGGGGATGGTACTATGTGCTTCTAATGATG
rJMFF030O03+ AACCGTCCAAACTTCGAGATGTGGCATCTGAGGGGATGGTACTATGTGCTTCTAATGATG
rJMFF037H22+ AACCGTCCAAACTTCGAGATGTGGCATCTGAGGGGATGGTACTATGTGCTTCTAATGATG
rJMFF009P24+ AACCGTCCAAACTTCGAGATGTGGCATCTGAGGGGATGGTACTATGTGCTTCTAATGATG
rJMFF043J20+ AACCGTCCAAACTTCGAGATGTGGCATCTGAGGGGATGGTACTATGTGCTTCTAATGATG
____________________________________________________________
consensus AACCGTCCAAACTTCGAGATGTGGCATCTGAGGGGATGGTACTATGTGCTTCTAATGATG
. : . : . : . : . : . :
rJMFF021I09+ ATCACACAGTTGTGGAGCCTCTAATAGCACCGGAAGGGGCAAAAGTTGGGGAATGTGTGT
rJMFF030O03+ ATCACACAGTTGTGGAGCCTCTAATAGCACCGGAAGGGGCAAAAGTTGGGGAATGTGTGT
rJMFF037H22+ ATCACACAGTTGTGGAGCCTCTAATAGCACCGGAAGGGGCAAAAGTTGGGGAATGTGTGT
rJMFF009P24+ ATCACACAGTTGTGGAGCCTCTAATAGCACCGGAAGGGGCAAAAGTTGGGGAATGTGTGT
rJMFF043J20+ ATCACACAGTTGTGGAGCCTCTAATAGCACCGGAAGGGGCAAAAGTTGGGGAATGTGTGT
____________________________________________________________
consensus ATCACACAGTTGTGGAGCCTCTAATAGCACCGGAAGGGGCAAAAGTTGGGGAATGTGTGT
. : . : . : . : . : . :
rJMFF021I09+ CTTTTTCTGGACATGATGGAAAACCAGAGGATGTATTGAACCCTAAAAAGAAACAGTTTG
rJMFF030O03+ CTTTTTCTGGACATGATGGAAAACCAGAGGATGTATTGAACCCTAAAAAGAAACAGTTTG
rJMFF037H22+ CTTTTTCTGGACATGATGGAAAACCAGAGGATGTATTGAACCCTAAAAAGAAACAGTTTG
rJMFF009P24+ CTTTTTCTGGACATGATGGAAAACCAGAGGATGTATTGAACCCTAAAAAGAAACAGTTTG
rJMFF043J20+ CTTTTTCTGGACATGATGGAAAACCAGAGGATGTATTGAACCCTAAAAAGAAACAGTTTG
____________________________________________________________
consensus CTTTTTCTGGACATGATGGAAAACCAGAGGATGTATTGAACCCTAAAAAGAAACAGTTTG
. : . : . : . : . : . :
rJMFF021I09+ ACAAAATAGCTGTGAACCTCTTCACGGATGACAATGGCGTGGCCACATTCAAGGGTATCC
rJMFF030O03+ ACAAAATAGCTGTGAACCTCTTCACGGATGACAATGGCGTGGCCACATTCAAGGGTATCC
rJMFF037H22+ ACAAAATAGCTGTGAACCTCTTCACGGATGACAATGGCGTGGCCACATTCAAGGGTATCC
rJMFF009P24+ ACAAAATAGCTGTGAACCTCTTCACGGATGACAATGGCGTGGCCACATTCAAGGGTATCC
rJMFF043J20+ ACAAAATAGCTGTGAACCTCTTCACGGATGACAATGGCGTGGCCACATTCAAGGGTATCC
____________________________________________________________
consensus ACAAAATAGCTGTGAACCTCTTCACGGATGACAATGGCGTGGCCACATTCAAGGGTATCC
. : . : . : . : . : . :
rJMFF021I09+ CATTCATGACTTCTGCTGGGCCCTGCACATCCTCCCTCCCTCGTGCTAGCATCAAGTGAT
rJMFF030O03+ CATTCATGACTTCTGCTGGGCCCTGCACATCCTCCCTCCCTCGTGCTAGCATCAAGTGAT
rJMFF037H22+ CATTCATGACTTCTGCTGGGCCCTGCACATCCTCCCTCCCTCGTGCTAGCATCAAGTGAT
rJMFF009P24+ CATTCATGACTTCTGCTGGGCCCTGCACATCCTCCCTCCCTCGTGCTAGCATCAAGTGAT
rJMFF043J20+ CATTCATGACTTCTGCTGGGCCCTGCACATCCTCCCTCCCTCGTGCTAGCATCAAGTGAT
____________________________________________________________
consensus CATTCATGACTTCTGCTGGGCCCTGCACATCCTCCCTCCCTCGTGCTAGCATCAAGTGAT
. : . : . : . : . : . :
rJMFF021I09+ GGACGCACATTTGAAATCTGCGAGATCGCGAAAATTTTCTCAGTTCAACCTAGATATTAT
rJMFF030O03+ GGACGCACATTTGAAATCTGCGAGATCGCGAAAATTTTCTCAGTTCAACCTAGATATTAT
rJMFF037H22+ GGACGCACATTTGAAATCTGCGAGATCGCGAAAATTTTCTCAGTTCAACCTAGATATTAT
rJMFF009P24+ GGACGCACATTTGAAATCTGCGAGATCGCGAAAATTTTCTCAGTTCAACCTAGATATTAT
rJMFF043J20+ GGACGCACATTTGAAATCTGCGAGATCGCGAAAATTTTCTCAGTTCAACCTAGATATTAT
____________________________________________________________
consensus GGACGCACATTTGAAATCTGCGAGATCGCGAAAATTTTCTCAGTTCAACCTAGATATTAT
. : . : . : . : . : . :
rJMFF021I09+ AATGATTATCTTTTGTAGAGCAAACTGCATTTTGTTGGAAAAGTTTTGGTTAGCTGGAGT
rJMFF030O03+ AATGATTATCTTTTGTAGAGCAAACTGCATTTTGTTGGAAAAGTTTTGGTTAGCTGGAGT
rJMFF037H22+ AATGATTATCTTTTGTAGAGCAAACTGCATTTTGTTGGAAAAGTTTTGGTTAGCTGGAGT
rJMFF009P24+ AATGATTATCTTTTGTAGAGCAAACTGCATTTTGTTGGAAAAGTTTTGGTTAGCTGGAGT
rJMFF043J20+ AATGATTATCTTTTGTAGAGCAAACTGCATTTTGTTGGAAAAGTTTTGGTTAGCTGGAGT
____________________________________________________________
consensus AATGATTATCTTTTGTAGAGCAAACTGCATTTTGTTGGAAAAGTTTTGGTTAGCTGGAGT
. : . : . : . : . : . :
rJMFF021I09+ TGTGCTGTATGTTGTAGTATTCTACAGTGATGGGATATGAATGGCGACCGTACC
rJMFF030O03+ TGTGCTGTATGTTGTAGTATTCTACAGTGATGGGATATGAATGGCGACCGTACCTTGAAA
rJMFF037H22+ TGTGCTGTATGTTGTAGTATTCTACAGTGATGGGATATGAATGGCGACCGTACCTTGAAA
rJMFF009P24+ TGTGCTGTATGTTGTAGTATTCTACAGTGATGGGATATGAATGGCGACCGTACCTTGAAA
rJMFF043J20+ TGTGCTGTATGTTGTAGTATTCTACAGTGATGGGATATGAATGGCGACCGTACCTTGAAA
____________________________________________________________
consensus TGTGCTGTATGTTGTAGTATTCTACAGTGATGGGATATGAATGGCGACCGTACCTTGAAA
. : . : . : . : . : . :
rJMFF030O03+ A
rJMFF037H22+ ATCTATGCAGAAATGCCATTGACACGTTTTGTCTT
rJMFF009P24+ ATCTATGCAGAAATGCCATTGACACGTTTTGTCTT
rJMFF043J20+ ATCTATGCAGAAATGCCATTGACACGTTTTGTCTTTGAAAATCTCAAAGATCATGACTGC
____________________________________________________________
consensus ATCTATGCAGAAATGCCATTGACACGTTTTGTCTTTGAAAATCTCAAAGATCATGACTGC