Contig 001188:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015L13Sequence621001188 (5)ref|XP_009600630.1|2e-90PREDICTED: random slug protein 5-like [Nicotiana tomentosiformis]654001188 (5)ref|XP_004235849.1|1e-93PREDICTED: random slug protein 5 [Solanum lycopersicum]
JMFF043G02Sequence618000240 (2)ref|XP_009783051.1|1e-43PREDICTED: transcription factor RF2b-like [Nicotiana sylvestris]633001188 (5)ref|XP_004235849.1|9e-81PREDICTED: random slug protein 5 [Solanum lycopersicum]
JMSF009L07Sequence343001188 (5)ref|XP_006366291.1|3e-29PREDICTED: random slug protein 5-like [Solanum tuberosum]806001188 (5)ref|XP_006341468.1|1e-132PREDICTED: random slug protein 5-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF015L13-                                                            AATACAGAACA
                      ____________________________________________________________
consensus                                                              AATACAGAACA
 
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JMSF009L07-           GAACAGATACTCTCTTCTCCACCTCAGTTTCTGATCTTCCATTTTCAAAAGAAAATTGGC
JMFF015L13-           GAACAGATACTCTCTTCTCCACCTCAGTTTCTGATCTTCCATTTTCAAAAGAAAATTGGC
                      ____________________________________________________________
consensus             GAACAGATACTCTCTTCTCCACCTCAGTTTCTGATCTTCCATTTTCAAAAGAAAATTGGC
 
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JMSF009L07-           AGTGATGGAGGAGAATATGGGAATTGGGGAAAATAATGGGCAGAAAGTGAAAGACGCAGA
JMFF015L13-           AGTGATGGAGGAGAATATGGGAATTGGGGAAAATAATGGGCAGAAAGTGGAAGACGCAGA
rJMSF009L07+                 GAGGAGGATATNGGAATTGGGGAAAATAATGGGCAGAAAGTGAAAGACGCAGA
                      ____________________________________________________________
consensus             AGTGATGGAGGAGAATATGGGAATTGGGGAAAATAATGGGCAGAAAGTGAAAGACGCAGA
 
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JMSF009L07-           AAGCTTTAGCCTTCAAGAGAGGAACAAAGTTGAGCTGATGAGAGCTGTTGTGCAGAAACA
JMFF015L13-           AAGCTTTAGCCTTCAAGAGAGGAACAAAGTTGAGCTGATGAGAGCTGTTGTGCAGAAACA
rJMSF009L07+          AAGCTTTAGCCTTCAAGAGAGGAACAAAGTTGAGCTGATGAGAGCTGTTGTGCAGAAACA
                      ____________________________________________________________
consensus             AAGCTTTAGCCTTCAAGAGAGGAACAAAGTTGAGCTGATGAGAGCTGTTGTGCAGAAACA
 
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JMSF009L07-           AGATCCATCTTCTCAGGAAGTTGACGATTACGCAATGAGAAGATTTCTTCGTGCACGTGA
JMFF015L13-           AGATCCATCTTCTCAGGAAGTTGACGATTACGCAATGAGAAGATTTCTTCGTGCACGTGA
rJMSF009L07+          AGATCCATCTTCTCAGGAAGTTGACGATTACGCAATGAGAAGATTTCTTCGTGCACGTGA
                      ____________________________________________________________
consensus             AGATCCATCTTCTCAGGAAGTTGACGATTACGCAATGAGAAGATTTCTTCGTGCACGTGA
 
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JMSF009L07-           TCTAGACATTGAAAAAGCTTCTGCCATGTTGTTAAAGTATCTCAAATGGAAGCGTACATT
JMFF015L13-           TCTAGACATTGAAAAAGCTTCTGCCATGTTGTTAAAGTATCTCAAATGGAAGCGTACATT
rJMSF009L07+          TCTAGACATTGAAAAAGCTTCTGCCATGTTGTTAAAGTATCTCAAATGGAAGCGTACATT
                      ____________________________________________________________
consensus             TCTAGACATTGAAAAAGCTTCTGCCATGTTGTTAAAGTATCTCAAATGGAAGCGTACATT
 
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JMSF009L07-           TATGCCAAAAGGTTGTATTTCAACCTCAGAAATACAAAA                     
JMFF015L13-           TATGCCAAAAGGTTGTATTTCAACCTCAGAAATACAAAATGAAATAGCCCAAAACAAGAT
rJMSF009L07+          TATGCCAAAAGGTTGTATTTCAACCTCAGAAATACAAAAGGAAATAGCCCAAAACAAGAT
rJMFF015L13+                                  CTCAGAAATACAAAATGAAATAGCCCAAAACAAGAT
                      ____________________________________________________________
consensus             TATGCCAAAAGGTTGTATTTCAACCTCAGAAATACAAAATGAAATAGCCCAAAACAAGAT
 
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JMFF015L13-           GTTTATGCAAGGAGTGGATAAACAAGGACGTCCCATTGCGGTTGTTTATGGTGGTAGACA
rJMSF009L07+          GTTTATGCAAGGAGTGGATAAACAAGGACGTCCCATTGCGGTTGTTTATGGTGGTAGACA
rJMFF015L13+          GTTTATGCAAGGAGTGGATAAACAAGGACGTCCCATTGCGGTTGTTTATGGTGGTAGACA
rJMFF043G02+                                     ACGTCCCATTGCGGTTGTTTATGGTGGTAGACA
                      ____________________________________________________________
consensus             GTTTATGCAAGGAGTGGATAAACAAGGACGTCCCATTGCGGTTGTTTATGGTGGTAGACA
 
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JMFF015L13-           TCTACAAAACAAAGGTGGACTCGAAGAATTTAAACGTTATGTAGCTTTTGGTTTGGACAA
rJMSF009L07+          TCTACAAAACAAAGGTGGACTCGAAGAATTTAAACGTTATGTAGCTTTTGGTTTGGACAA
rJMFF015L13+          TCTACAAAACAAAGGTGGACTCGAAGAATTTAAACGTTATGTAGCTTTTGGTTTGGACAA
rJMFF043G02+          TCTACAAAACAAAGGTGGACTCGAAGAATTTAAACGTTATGTAGCTTTTGGTTTGGACAA
                      ____________________________________________________________
consensus             TCTACAAAACAAAGGTGGACTCGAAGAATTTAAACGTTATGTAGCTTTTGGTTTGGACAA
 
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JMFF015L13-           ATTATGTGCAAGGACATCACCTGGCAAGGAGAAGTTTGTTGTGATTGGAGATCTTGAAGG
rJMSF009L07+          ATTATGTGCAAGGACATCACCTGGCAAGGAGAAGTTTGTTGTGATTGGAGATCTTGAAGG
rJMFF015L13+          ATTATGTGCAAGGACATCACCTGGCAAGGAGAAGTTTGTTGTGATTGGAGATCTTGAAGG
rJMFF043G02+          ATTATGTGCAAGGACATCACCTGGCAAGGAGAAGTTTGTTGTGATTGGAGATCTTGAAGG
                      ____________________________________________________________
consensus             ATTATGTGCAAGGACATCACCTGGCAAGGAGAAGTTTGTTGTGATTGGAGATCTTGAAGG
 
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JMFF015L13-           TTTTGGGTATTCAAACAGTGATGTCAGGGGATATCTTGCATCTCTATCTATTCTACAGGA
rJMSF009L07+          TTTTGGGTATTCAAACAGTGATGTCAGGGGATATCTTGCATCTCTATCTATTCTACAGGA
rJMFF015L13+          TTTTGGGTATTCAAACAGTGATGTCAGGGGATATCTTGCATCTCTATCTATTCTACAGGA
rJMFF043G02+          TTTTGGGTATTCAAACAGTGATGTCAGGGGATATCTTGCATCTCTATCTATTCTACAGGA
                      ____________________________________________________________
consensus             TTTTGGGTATTCAAACAGTGATGTCAGGGGATATCTTGCATCTCTATCTATTCTACAGGA
 
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JMFF015L13-           TTTCTATCCA                                                  
rJMSF009L07+          TTTCTATCCAGAAAGATTAGGAAAATTGTTTGTTGTCCACGTGCCTTACCTGTTCTGGAC
rJMFF015L13+          TTTCTATCCAGAAAGATTAGGAAAATTGTTTGTTGTCCACGTGCCTTACCTGTTCTGGAC
rJMFF043G02+          TTTCTATCCAGAAAGATTAGGAAAATTGTTTGTTGTCCACGTGCCTTACCTGTTCTGGAC
                      ____________________________________________________________
consensus             TTTCTATCCAGAAAGATTAGGAAAATTGTTTGTTGTCCACGTGCCTTACCTGTTCTGGAC
 
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rJMSF009L07+          ATTGTACAAAATTGTGTGCCCTTTCATTGATAACAATACCAAGAAAAAGATCATATTTGT
rJMFF015L13+          ATTGTACAAAATTGTGTGCCCTTTCATTGACAACAATACCAAGAAAAAGATCATATTTGT
rJMFF043G02+          ATTGTACAAAATTGTGTGCCCTTTCATTGACAACAATACCAAGAAAAAGATCATATTTGT
                      ____________________________________________________________
consensus             ATTGTACAAAATTGTGTGCCCTTTCATTGACAACAATACCAAGAAAAAGATCATATTTGT
 
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rJMSF009L07+          AGAAAATAAACGGCTGACGTCAACTTTGTTGGAAGATATTGATGAGAGCCAGCTCCCAGA
rJMFF015L13+          AGAAAATAAACGGCTGACGTCAACTTTGTTGGAAGATATTGATGAGAGCCAGCTCCCAGA
rJMFF043G02+          AGAAAATAAACGGCTGACGTCAACTTTGTTGGAAGATATTGATGAGAGCCAGCTCCCAGA
                      ____________________________________________________________
consensus             AGAAAATAAACGGCTGACGTCAACTTTGTTGGAAGATATTGATGAGAGCCAGCTCCCAGA
 
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rJMSF009L07+          GATCTATGGAGGCAAACAACCCTTAGTCCCTATCCACAATGCCTAATAATAAATCAGTAT
rJMFF015L13+          GATCTATGGAGGCAAACAACCCTTAGTCCCTATCCACAATGCCTAATAATAAATCAGTAT
rJMFF043G02+          GATCTATGGAGGCAAACAACCCTTAGTCCCTATCCACAATGCCTAATAATAAATCAGTAT
                      ____________________________________________________________
consensus             GATCTATGGAGGCAAACAACCCTTAGTCCCTATCCACAATGCCTAATAATAAATCAGTAT
 
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rJMSF009L07+          TAATTGTACTC                                                 
rJMFF015L13+          TAATTGTACTCTTTTAACTATGGTTAAATTTGGAATTGGATCTACTTAAGAATACCGTAT
rJMFF043G02+          TAATTGTACTCTTTTAACTATGGTTAAATTTGGAATTGGATCTACTTAAGAATACCGTAT
                      ____________________________________________________________
consensus             TAATTGTACTCTTTTAACTATGGTTAAATTTGGAATTGGATCTACTTAAGAATACCGTAT
 
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rJMFF015L13+          TCTTATTTCCAAGTATTACTCCATCTCCATCGGTGCCTATGTCATTTGACATGTATGTTT
rJMFF043G02+          TCTTATTTCCAAGTATTACTCCATCTCCATCGGTGCCTATGTCATTTGACATGTATGTTT
                      ____________________________________________________________
consensus             TCTTATTTCCAAGTATTACTCCATCTCCATCGGTGCCTATGTCATTTGACATGTATGTTT
 
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rJMFF015L13+          ATTATTTATGAATCAAAT                                          
rJMFF043G02+          ATTATTTATGAATCAAATTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ATTATTTATGAATCAAATTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG