| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011O01 | Sequence | 594 | 001186 (6) | emb|CDO99437.1| | 1e-20 | unnamed protein product [Coffea canephora] | 731 | 001186 (6) | ref|XP_009631705.1| | 116 | PREDICTED: uncharacterized protein LOC104121413 [Nicotiana tomentosiformis] |
| JMFF042C13 | Sequence | 659 | 001186 (6) | emb|CDO99437.1| | 2e-20 | unnamed protein product [Coffea canephora] | 595 | 001186 (6) | ref|XP_009631705.1| | 116 | PREDICTED: uncharacterized protein LOC104121413 [Nicotiana tomentosiformis] |
| JMFF044H17 | Sequence | 613 | 001186 (6) | emb|CDO99437.1| | 2e-20 | unnamed protein product [Coffea canephora] | 607 | 001186 (6) | ref|XP_009631705.1| | 116 | PREDICTED: uncharacterized protein LOC104121413 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFF044H17- AATCCGCGCAGCGGGGCAGCGCTCCATTCCTTCAACTTT
____________________________________________________________
consensus AATCCGCGCAGCGGGGCAGCGCTCCATTCCTTCAACTTT
. : . : . : . : . : . :
JMFF044H17- CCTCTTCCGCCCTTCTATTCGGTCAAATGGGAGCAATAAAGATGTAGAAATCAAAAATCC
____________________________________________________________
consensus CCTCTTCCGCCCTTCTATTCGGTCAAATGGGAGCAATAAAGATGTAGAAATCAAAAATCC
. : . : . : . : . : . :
JMFF044H17- CAGTGAGAAGTGTCCAAAAATTTCTCTCTCGGACTTCCTCAACAAAAAATTGCACAAAAG
____________________________________________________________
consensus CAGTGAGAAGTGTCCAAAAATTTCTCTCTCGGACTTCCTCAACAAAAAATTGCACAAAAG
. : . : . : . : . : . :
JMFF011O01- CAGAGGAAGGAGAAGCAATTTCTGTCGCCAGTGGGCAG
JMFF044H17- TTCTGTTCTTTCCGGTTCAGTTCAGAGGAAGGAGAAGCAATTTCTGTCGCCAGTGGGCAG
JMFF042C13- CAGAGGAAGGAGAAGCAATTTCTGTCGCCAGTGGGCAG
____________________________________________________________
consensus TTCTGTTCTTTCCGGTTCAGTTCAGAGGAAGGAGAAGCAATTTCTGTCGCCAGTGGGCAG
. : . : . : . : . : . :
JMFF011O01- CAAGGACGCTATAAGATTCCCTAAAGAAAATGGAAATAGCAAGGAAAAAGATTGTGCTCT
JMFF044H17- CAAGGACGCTATAAGATTCCCTAAAGAAAATGGAAATAGCAAGGAAAAAGATTGTGCTCT
JMFF042C13- CAAGGACGCTATAAGATTCCCTAAAGAAAATGGAAATAGCAAGGAAAAAGATTGTGCTCT
rJMFF011O01+ AAATGGAAATAGCAAGGAAAAAGATTGTGCTCT
____________________________________________________________
consensus CAAGGACGCTATAAGATTCCCTAAAGAAAATGGAAATAGCAAGGAAAAAGATTGTGCTCT
. : . : . : . : . : . :
JMFF011O01- TGATGTTATACTTGAAAAGCTTAAGCCATCTGATAAAGGGGAAGAACATGGTGATAGAGG
JMFF044H17- TGATGTTATACTTGAAAAGCTTAAGCCATCTGATAAAGGGGAAGAACATGGTGATAGAGG
JMFF042C13- TGATGTTATACTTGAAAAGCTTAAGCCATCTGATAAAGGGGAAGAACATGGTGATAGAGG
rJMFF011O01+ TGATGTTATACTTGAAAAGCTTAAGCCATCTGATAAAGGGGAAGAACATGGTGATAGAGG
____________________________________________________________
consensus TGATGTTATACTTGAAAAGCTTAAGCCATCTGATAAAGGGGAAGAACATGGTGATAGAGG
. : . : . : . : . : . :
JMFF011O01- TAGTGGTTGTGATGATGAAGCTGTGATTTCTAGCACAGAAGATACGGAAGTATCAAGGAA
JMFF044H17- TAGTGGTTGTGATGATGAAGCTGTGATTTCTAGCACAGAAGATACGGAAGTATCAAGGAA
JMFF042C13- TAGTGGTTGTGATGATGAAGCTGTGATTTCTAGCACAGAAGATACGGAAGTATCAAGGAA
rJMFF011O01+ TAGTGGTTGTGATGATGAAGCTGTGATTTCTAGCACAGAAGATACGGAAGTATCAAGGAA
rJMFF044H17+ CAAGGAA
____________________________________________________________
consensus TAGTGGTTGTGATGATGAAGCTGTGATTTCTAGCACAGAAGATACGGAAGTATCAAGGAA
. : . : . : . : . : . :
JMFF011O01- GAGAAGAAATGTGTTTGAAGGTTAGTCAATTTCTTCCCAAATGTAATCATTTACGTCTGT
JMFF044H17- GAGAAGAAATGTGTTTGAAGGTTAGTCAATTTCTTCCCAAATGTAATCATTTACGTCTGT
JMFF042C13- GAGAAGAAATGTGTTTGAAGGTTAGTCAATTTCTTCCCAAATGTAATCATTTACGTCTGT
rJMFF011O01+ GAGAAGAAATGTGTTTGAAGGTTAGTCAATTTCTTCCCAAATGTAATCATTTACGTCTGT
rJMFF044H17+ GAGAAGAAATGTGTTTGAAGGTTAGTCAATTTCTTCCCAAATGTAATCATTTACGTCTGT
rJMFF042C13+ GAAATGTGTTTGAAGGTTAGTCAATTTCTTCCCAAATGTAATCATTTACGTCTGT
____________________________________________________________
consensus GAGAAGAAATGTGTTTGAAGGTTAGTCAATTTCTTCCCAAATGTAATCATTTACGTCTGT
. : . : . : . : . : . :
JMFF011O01- TTTTAGCATGTCTGTGTGATTGTAGCAAACCGGCAAACCATTCTGCTAATATGATGTATT
JMFF044H17- TTTTAGCATGTCTGTGTGATTGTAGCAAACCGGCAAACCATTCTGCTAATATGATGTATT
JMFF042C13- TTTTAGCATGTCTGTGTGATTGTAGCAAACCGGCAAACCATTCTGCTAATATGATGTATT
rJMFF011O01+ TTTTAGCATGTCTGTGTGATTGTAGCAAACCGGCAAACCATTCTGCTAATATGATGTATT
rJMFF044H17+ TTTTAGCATGTCTGTGTGATTGTAGCAAACCGGCAAACCATTCTGCTAATATGATGTATT
rJMFF042C13+ TTTTAGCATGTCTGTGTGATTGTAGCAAACCGGCAAACCATTCTGCTAATATGATGTATT
____________________________________________________________
consensus TTTTAGCATGTCTGTGTGATTGTAGCAAACCGGCAAACCATTCTGCTAATATGATGTATT
. : . : . : . : . : . :
JMFF011O01- ATTTGCCTCATCACTATTCACTATACATCTTATGTTTTGAATTACAAGGTAATGATGACG
JMFF044H17- ATTTGCCTCATCACTATTCACTATACATCTTATGTTTTGAATTACAAGGTAATGATGACG
JMFF042C13- ATTTGCCTCATCACTATTCACTATACATCTTATGTTTTGAATTACAAGGTAATGATGACG
rJMFF011O01+ ATTTGCCTCATCACTATTCACTATACATCTTATGTTTTGAATTACAAGGTAATGATGACG
rJMFF044H17+ ATTTGCCTCATCACTATTCACTATACATCTTATGTTTTGAATTACAAGGTAATGATGACG
rJMFF042C13+ ATTTGCCTCATCACTATTCACTATACATCTTATGTTTTGAATTACAAGGTAATGATGACG
____________________________________________________________
consensus ATTTGCCTCATCACTATTCACTATACATCTTATGTTTTGAATTACAAGGTAATGATGACG
. : . : . : . : . : . :
JMFF011O01- GGCAATCTGCTCGAA
JMFF044H17- GGCAATCTGCTCGAA
JMFF042C13- GGCAATCTGCTCGAAAGGTTCTTGTAGTCTTGGGAGGGGATTCAAAGAATAAGCAAAGCA
rJMFF011O01+ GGCAATCTGCTCGAAAGGTTCTTGTAGTCTTGGGAGGGGATTCAAAGAATAAGCAAAGCA
rJMFF044H17+ GGCAATCTGCTCGAAAGGTTCTTGTAGTCTTGGGAGGGGATTCAAAGAATAAGCAAAGCA
rJMFF042C13+ GGCAATCTGCTCGAAAGGTTCTTGTAGTCTTGGGAGGGGATTCAAAGAATAAGCAAAGCA
____________________________________________________________
consensus GGCAATCTGCTCGAAAGGTTCTTGTAGTCTTGGGAGGGGATTCAAAGAATAAGCAAAGCA
. : . : . : . : . : . :
JMFF042C13- GAAAAGGGAAGAGTCATGCC
rJMFF011O01+ GAAAAGGGAAGAGTCATGCCACTGTTGAGAAACCAGCTAACTACTTCAATCATTATGCAA
rJMFF044H17+ GAAAAGGGAAGAGTCATGCCACTGTTGAGAAACCAGCTAACTACTTCAATCATTATGCAA
rJMFF042C13+ GAAAAGGGAAGAGTCATGCCACTGTTGAGAAACCAGCTAACTACTTCAATCATTATGCAA
____________________________________________________________
consensus GAAAAGGGAAGAGTCATGCCACTGTTGAGAAACCAGCTAACTACTTCAATCATTATGCAA
. : . : . : . : . : . :
rJMFF011O01+ ATGGAGGTGGGTGGTGGGATTATGGGAAGGAAGGGGTTGACAATGAAGAAGTGGGATGCA
rJMFF044H17+ ATGGAGGTGGGTGGTGGGATTATGGGAAGGAAGGGGTTGACAATGAAGAAGTGGGATGCA
rJMFF042C13+ ATGGAGGTGGGTGGTGGGATTATGGGAAGGAAGGGGTTGACAATGAAGAAGTGGGATGCA
____________________________________________________________
consensus ATGGAGGTGGGTGGTGGGATTATGGGAAGGAAGGGGTTGACAATGAAGAAGTGGGATGCA
. : . : . : . : . : . :
rJMFF011O01+ ATGAAATGTGGGAAGGAAGGGGATGTACCACCTTAGGTGGACTTGATTGGCATTGATTTA
rJMFF044H17+ ATGAAATGTGGGAAGGAAGGGGATGTACCACCTTAGGTGGACTTGATTGGCATTGATTTA
rJMFF042C13+ ATGAAATGTGGGAAGGAAGGGGATGTACCACCTTAGGTGGACTTGATTGGCATTGATTTA
____________________________________________________________
consensus ATGAAATGTGGGAAGGAAGGGGATGTACCACCTTAGGTGGACTTGATTGGCATTGATTTA
. : . : . : . : . : . :
rJMFF011O01+ CATTTGGTCTTAGATAAACTGCATATGATACCTATTGTAAGATAATTTGACTAAAGTGGT
rJMFF044H17+ CATTTGGTCTTAGATAAACTGCATATGATACCTATTGTAAGATAATTTGACTAAAGTGGT
rJMFF042C13+ CATTTGGTCTTAGATAAACTGCATATGATACCTATTGTAAGATAATTTGACTAAAGTGGT
____________________________________________________________
consensus CATTTGGTCTTAGATAAACTGCATATGATACCTATTGTAAGATAATTTGACTAAAGTGGT
. : . : . : . : . : . :
rJMFF011O01+ GTCATTAAAGCATGGTTTGAACTTGAAATGTGGTAGATTTCCACCTGAACTTTCTTGTAT
rJMFF044H17+ GTCATTAAAGCATGGTTTGAACTTGAAATGTGGTAGATTTCCACCTGAACTTTCTTGTAT
rJMFF042C13+ GTCATTAAAGCATGGTTTGAACTTGAAATGTGGTAGATTTCCACCTGAACTTTCTTGTAT
____________________________________________________________
consensus GTCATTAAAGCATGGTTTGAACTTGAAATGTGGTAGATTTCCACCTGAACTTTCTTGTAT
. : . : . : . : . : . :
rJMFF011O01+ AATATTATCAGATGATTCCTATTATCAGGATTAGATAT
rJMFF044H17+ AATATTATCAGATGATTCCTATTATCAGGATTAGATATGATGATAGTAACATTTTCAACT
rJMFF042C13+ AATATTATCAGATGATTCCTATTATCAGGATTAGATATGATGATAGTAACATTTTCAACT
____________________________________________________________
consensus AATATTATCAGATGATTCCTATTATCAGGATTAGATATGATGATAGTAACATTTTCAACT