| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041M01 | Sequence | 639 | 010835 (3) | ref|XP_004234663.1| | 4e-76 | PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Solanum lycope | 535 | 001183 (3) | ref|XP_009783411.1| | 3e-30 | PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Nicotiana sylv |
| JMSF001N19 | Sequence | 297 | 010835 (3) | 764 | 001183 (3) | ref|XP_009783411.1| | 6e-81 | PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Nicotiana sylv | |||
| JMSF039F20 | Sequence | 714 | 010835 (3) | ref|XP_004234663.1| | 6e-92 | PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Solanum lycope | 876 | 001183 (3) | ref|XP_009783411.1| | 4e-101 | PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Nicotiana sylv |
This contig is upended
. : . : . : . : . : . :
rJMSF039F20+ TTTGCNAGATACAATCAATTA
____________________________________________________________
consensus TTTGCNAGATACAATCAATTA
. : . : . : . : . : . :
rJMSF039F20+ TGCCCAGATGTTGGAGGAGGNCTGGTTTGTGCTNTTCTAGCCGTGCATGGACGAACAAGG
____________________________________________________________
consensus TGCCCAGATGTTGGAGGAGGNCTGGTTTGTGCTNTTCTAGCCGTGCATGGACGAACAAGG
. : . : . : . : . : . :
rJMSF039F20+ GATGAAAAAGATGGGAAGAAATTTCGAGCAAACTGGGATATCATCAAGGCTGTTAAAAAT
rJMSF001N19+ AAAAT
____________________________________________________________
consensus GATGAAAAAGATGGGAAGAAATTTCGAGCAAACTGGGATATCATCAAGGCTGTTAAAAAT
. : . : . : . : . : . :
rJMSF039F20+ TCAGTGAGAATCCCTGTACTTGCTAATGGAAATATTCGACACATGGATGACGTACAAAGT
rJMSF001N19+ TCAGTGAGAATCCCTGTACTTGCTAATGGAAATATTCGACACATGGATGACGTACAAAGT
____________________________________________________________
consensus TCAGTGAGAATCCCTGTACTTGCTAATGGAAATATTCGACACATGGATGACGTACAAAGT
. : . : . : . : . : . :
rJMSF039F20+ TGTTTAGAAGAGACCGGTGTAGAGGGTGTTCTTTCAGCCGAGTCTCTTCTCGAGAACCCT
rJMSF001N19+ TGTTTAGAAGAGACCGGTGTAGAGGGTGTTCTTTCAGCCGAGTCTCTTCTCGAGAACCCT
____________________________________________________________
consensus TGTTTAGAAGAGACCGGTGTAGAGGGTGTTCTTTCAGCCGAGTCTCTTCTCGAGAACCCT
. : . : . : . : . : . :
rJMSF039F20+ GCCCTCTTTGCTGGATATATGACAACCGAGTGGACGAATGGAAGTATAGGAATTAAGGAA
rJMSF001N19+ GCCCTCTTTGCTGGATATATGACAACCGAGTGGACGAATGGAAGTATAGGAATTAAGGAA
____________________________________________________________
consensus GCCCTCTTTGCTGGATATATGACAACCGAGTGGACGAATGGAAGTATAGGAATTAAGGAA
. : . : . : . : . : . :
rJMSF039F20+ GATGGCACAGTTGACCAGGCTGAGTTAGTGGTGGAGTATTTGAAGTTTTGTGAGAAATAC
rJMSF001N19+ GATGGCACAGTTGACCAGGCTGAGTTAGTGGTGGAGTATTTGAAGTTTTGTGAGAAATAC
____________________________________________________________
consensus GATGGCACAGTTGACCAGGCTGAGTTAGTGGTGGAGTATTTGAAGTTTTGTGAGAAATAC
. : . : . : . : . : . :
rJMSF039F20+ CCGGTGCCATGGAGAATGATCCGTTCTCATGTGCACAAGATGTTGGGAGAATGGTTCAAG
rJMSF001N19+ CCGGTGCCATGGAGAATGATCCGTTCTCATGTGCACAAGATGTTGGGAGAATGGTTCAAG
rJMFF041M01+ GCCATGGAGAATGATCCGTTCTCATGTGCACAAGATGTTGGGAGAATGGTTCAAG
____________________________________________________________
consensus CCGGTGCCATGGAGAATGATCCGTTCTCATGTGCACAAGATGTTGGGAGAATGGTTCAAG
. : . : . : . : . : . :
rJMSF039F20+ ATCCAGCCAGACGTAAGGGAGGATTTTAATAAACAATCCATTCTTACATTTGAATTTCTT
rJMSF001N19+ ATCCAGCCAGACGTAAGGGAGGATTTTAATAAACAATCCATTCTTACATTTGAATTTCTT
rJMFF041M01+ ATCCAGCCAGACGTAAGGGAGGATTTTAATAAACAATCCATTCTTACATTTGAATTTCTT
____________________________________________________________
consensus ATCCAGCCAGACGTAAGGGAGGATTTTAATAAACAATCCATTCTTACATTTGAATTTCTT
. : . : . : . : . : . :
rJMSF039F20+ TATGGTTTGGTAAATCAGCTAAGGGAACGTGGTGTGCAGATACCTTTATACGTGAAGGAC
rJMSF001N19+ TATGGTTTGGTAAATCAGCTAAGGGAACGTGGTGTGCAGATACCTTTATACGTGAAGGAC
rJMFF041M01+ TATGGTTTGGTAAATCAGCTAAGGGAACGTGGTGTGCAGATACCTTTATACGTGAAGGAC
____________________________________________________________
consensus TATGGTTTGGTAAATCAGCTAAGGGAACGTGGTGTGCAGATACCTTTATACGTGAAGGAC
. : . : . : . : . : . :
rJMSF039F20+ CCTAACAATGAAGGAATGTCTACAAATGGAATAGTTGCATGAGATCTGTTTTCTCATAAC
rJMSF001N19+ CCTAACAATGAAGGAATGTCTACAAATGGAATAGTTGCATGAGATCTGTTTTCTCATAAC
rJMFF041M01+ CCTAACAATGAAGGAATGTCTACAAATGGAATAGTTGCATGAGATCTGTTTTCTCATAAC
____________________________________________________________
consensus CCTAACAATGAAGGAATGTCTACAAATGGAATAGTTGCATGAGATCTGTTTTCTCATAAC
. : . : . : . : . : . :
rJMSF039F20+ GATTTCATTCCAAGAACATCAATTTACTACTTGCTTTTGCTTATTGTTCTTTTGAGTCTT
rJMSF001N19+ GATTTCATTCCAAGAACATCAATTTACTACTTGCTTTTGCTTATTGTTCTTTTGAGTCTT
rJMFF041M01+ GATTTCATTCCAAGAACATCAATTTACTACTTGCTTTTGCTTATTGTTCTTTTGAGTCTT
____________________________________________________________
consensus GATTTCATTCCAAGAACATCAATTTACTACTTGCTTTTGCTTATTGTTCTTTTGAGTCTT
. : . : . : . : . : . :
rJMSF039F20+ ACTTATCAGATGGTTACTGTGGTTCCCCAAATGAACACCGTGAAACCAGGCGGAGAAAGA
rJMSF001N19+ ACTTATCAGATGGTTACTGTGGTTCCCCAAATGAACACCGTGAAACCAGGCGGAGAAAGA
rJMFF041M01+ ACTTATCAGATGGTTACTGTGGTTCCCCAAATGAACCCCGTGAAACCAGGCGGAGAAAGA
____________________________________________________________
consensus ACTTATCAGATGGTTACTGTGGTTCCCCAAATGAACACCGTGAAACCAGGCGGAGAAAGA
. : . : . : . : . : . :
rJMSF039F20+ AGAGCCTGGATATCATTAAATCTCGAGGTTAAAACTTAACCTTTCACTCACTGCATTAGT
rJMSF001N19+ AGAGCCTGGATATCATTAAATCTCGAGGTTAAAACTTAACCTTTCACTCACTGCATTAGT
rJMFF041M01+ AGAGCCTGGATATCATTAAATCTCGAGGTTAAAACTTAACCTTTCACTCACTGCATTAGT
____________________________________________________________
consensus AGAGCCTGGATATCATTAAATCTCGAGGTTAAAACTTAACCTTTCACTCACTGCATTAGT
. : . : . : . : . : . :
rJMSF039F20+ ATTGATAGGAGTTTATACACAAGCATTTGTAATTCACCTGCCTGGATTCCCTGGAAAAAG
rJMSF001N19+ ATTGATAGGAGTTTATACACAAGCATTTGTAATTCACCTGCCTGGATTCCCTGGAAAAAG
rJMFF041M01+ ATTGATAGGAGTTTATACACAAGCATTTGTAATTCACCTGCCTGGATTCCCTGGAAAAAG
____________________________________________________________
consensus ATTGATAGGAGTTTATACACAAGCATTTGTAATTCACCTGCCTGGATTCCCTGGAAAAAG
. : . : . : . : . : . :
rJMSF039F20+ GTTTGTATGTACCTT
rJMSF001N19+ GTTTGTATGTACCTT
rJMFF041M01+ GTTTGTATGTACCTTTATATAGTTTCACATGTATGGTTAATGAGCAGATATTTGAGGCTT
____________________________________________________________
consensus GTTTGTATGTACCTTTATATAGTTTCACATGTATGGTTAATGAGCAGATATTTGAGGCTT