Contig 001180:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041F05Sequence659000570 (2)ref|XP_009790729.1|272PREDICTED: uncharacterized protein LOC104238140 [Nicotiana sylvestris]593001180 (2)emb|CBI37438.3|1e-24unnamed protein product [Vitis vinifera]
JMSF003N05Sequence371000570 (2)ref|XP_009611710.1|5e-10PREDICTED: uncharacterized protein LOC104105161 isoform X2 [Nicotiana tomentosi744001180 (2)emb|CBI37438.3|8e-18unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF003N05+                                                                 AAACT
                      ____________________________________________________________
consensus                                                                    AAACT
 
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rJMSF003N05+          GGAGATGATCTTGGATCAAGTAGAGANGGNGGAGGCACATCTCATCAGGGAAAAACTANT
                      ____________________________________________________________
consensus             GGAGATGATCTTGGATCAAGTAGAGANGGNGGAGGCACATCTCATCAGGGAAAAACTANT
 
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rJMSF003N05+          GAGCATAATGGATTAGAGGTTGGAACTTGCAATTCCANACAAGCAATCANGCAACGTGAC
                      ____________________________________________________________
consensus             GAGCATAATGGATTAGAGGTTGGAACTTGCAATTCCANACAAGCAATCANGCAACGTGAC
 
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rJMSF003N05+          AGCAAGGATGATGGAGTACAATCGACAATTCAGANCCANGATGTTGTGCCAACTATAGCA
                      ____________________________________________________________
consensus             AGCAAGGATGATGGAGTACAATCGACAATTCAGANCCANGATGTTGTGCCAACTATAGCA
 
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rJMSF003N05+          AAGGCTTTACAGGAAGTACCACTAGACAGAGGTACAGAGTTCGATCCGATAAGGCTACAC
rJMFF041F05+                 TACAGGAAGTACCACTAGACAGAGGTACAGAGTTCGATCCGATAAGGCTACAC
                      ____________________________________________________________
consensus             AAGGCTTTACAGGAAGTACCACTAGACAGAGGTACAGAGTTCGATCCGATAAGGCTACAC
 
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rJMSF003N05+          ANACATTTCTGTCCCTGGATTGCATCTAGTAGTGGCTCTGCACCNGGANGGCAACAAACT
rJMFF041F05+          AAACATTTCTGTCCCTGGATTGCATCTAGTAGTGGCTCTGCACCTGGATGGCAACAAACT
                      ____________________________________________________________
consensus             AAACATTTCTGTCCCTGGATTGCATCTAGTAGTGGCTCTGCACCTGGATGGCAACAAACT
 
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rJMSF003N05+          TTATCTGCTTTGGAATCTAATAAGGAGTTTTCTCATCCTTTGACTGGAGATGCCCCTTCG
rJMFF041F05+          TTATCTGCTTTGGAATCTAATAAGGAGTTTTCTCATCCTTTGACTGGAGATGCCCCTTCG
                      ____________________________________________________________
consensus             TTATCTGCTTTGGAATCTAATAAGGAGTTTTCTCATCCTTTGACTGGAGATGCCCCTTCG
 
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rJMSF003N05+          TCATCCCTGATTAAGGTTGATGATCCTGTTGCTTCGGTGAAAAGGCTTTTTATACCTACG
rJMFF041F05+          TCATCCCTGATTAAGGTTGATGATCCTGTTGCTTCGGTGAAAAGGCTTTTTATACCTACG
                      ____________________________________________________________
consensus             TCATCCCTGATTAAGGTTGATGATCCTGTTGCTTCGGTGAAAAGGCTTTTTATACCTACG
 
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rJMSF003N05+          CCNGCAAAAAGAAAGAAGCTTATCCNGTCTAGTTAAACACAATATATTGCCACCAGATTG
rJMFF041F05+          CCTGCAAAAAGAAAGAAGCTTATCCAGTCTAGTTAAACACAATATATTGCCACCAGATTG
                      ____________________________________________________________
consensus             CCTGCAAAAAGAAAGAAGCTTATCCAGTCTAGTTAAACACAATATATTGCCACCAGATTG
 
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rJMSF003N05+          CAAACCAGTGCAGTATGTTACGCTCTCAATTCACAAGAGGAAATGAAAGCAATGCATTTC
rJMFF041F05+          CAAACCAGTGCAGTATGTTACGCTCTCAATTCACAAGAGGAAATGAAAGCAATGCATTTC
                      ____________________________________________________________
consensus             CAAACCAGTGCAGTATGTTACGCTCTCAATTCACAAGAGGAAATGAAAGCAATGCATTTC
 
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rJMSF003N05+          ATAATGGAGATCAATTTTATTNTGAGCCCCNTGGTCCTAGAGATGAGGTGGGGATGAGTT
rJMFF041F05+          ATAATGGAGATCAATTTTATTCTGAGCCCCTTGGTCCTAGAGATGAGGTGGGGATGAGTT
                      ____________________________________________________________
consensus             ATAATGGAGATCAATTTTATTCTGAGCCCCTTGGTCCTAGAGATGAGGTGGGGATGAGTT
 
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rJMSF003N05+          GTCTGNCCAGTTCCTGTATTGCTTGAGATGTCTATTAACANTTTGAAATCGAAATAGAT 
rJMFF041F05+          GTCTGACCAGTTCCTGTATTGCTTGAGATGTCTATTAACATTTTGAAATCGAAATAGATX
                      ____________________________________________________________
consensus             GTCTGACCAGTTCCTGTATTGCTTGAGATGTCTATTAACATTTTGAAATCGAAATAGATN
 
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rJMFF041F05+          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATATCCTTTTTTATGACTGCATTATTTT
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATCCTTTTTTATGACTGCATTATTTT
 
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rJMFF041F05+          ACATTGTAAAAGATCCTATGATAAATATTATTCAAAAGTATGAATCAGTACAAGTTTGCC
                      ____________________________________________________________
consensus             ACATTGTAAAAGATCCTATGATAAATATTATTCAAAAGTATGAATCAGTACAAGTTTGCC