Contig 001178:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041D09Sequence560015294543001178 (3)gb|EYU19304.1|3e-20hypothetical protein MIMGU_mgv1a012341mg [Erythranthe guttata]
JMSF008F05Sequence476001178 (3)gb|KJB34670.1|5e-59hypothetical protein B456_006G077600 [Gossypium raimondii]754001178 (3)ref|XP_007035706.1|1e-79TRNA (guanine-N-7) methyltransferase isoform 1 [Theobroma cacao] ref|XP_00703570

Alignment

This contig is upended


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JMSF008F05-                         TAAACACCACGACCAGGCAGAAAATAGAGAATTCCGGCAGCAACCA
                      ____________________________________________________________
consensus                           TAAACACCACGACCAGGCAGAAAATAGAGAATTCCGGCAGCAACCA
 
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JMSF008F05-           AAATTCGTAAGGAAGAAATATGTTGGAAGGTGAAGGTAATCCTACTTTAAACAAGAAAAC
                      ____________________________________________________________
consensus             AAATTCGTAAGGAAGAAATATGTTGGAAGGTGAAGGTAATCCTACTTTAAACAAGAAAAC
 
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JMSF008F05-           AGGATTGCCTCGGAAACGATTTTACCGTGCAAGGGCTCATAGCAATCCGTTAAGTGATTC
                      ____________________________________________________________
consensus             AGGATTGCCTCGGAAACGATTTTACCGTGCAAGGGCTCATAGCAATCCGTTAAGTGATTC
 
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JMSF008F05-           ACATTTCCCAGTACCCATTTCCCCTGCTCAGGTGGACTATGTTTCTCATTACCCAAAATT
                      ____________________________________________________________
consensus             ACATTTCCCAGTACCCATTTCCCCTGCTCAGGTGGACTATGTTTCTCATTACCCAAAATT
 
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JMSF008F05-           ATCAGATGGCTTAAAAAAGATTGAGTTTGCAGATATAGGGTGTGGATTTGGTGGCCTTTT
rJMSF008F05+                                                                   TTT
                      ____________________________________________________________
consensus             ATCAGATGGCTTAAAAAAGATTGAGTTTGCAGATATAGGGTGTGGATTTGGTGGCCTTTT
 
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JMSF008F05-           GATTGCTCTTTCATCACTCTTTCCTGATACGGTAATGGTTGGAATGGAATTGAGGGATAA
rJMSF008F05+          GATTGCTCTTTCATCACTCTTTCCTGATACGGTAATGGTTGGAATGGAATTGAGGGATAA
                      ____________________________________________________________
consensus             GATTGCTCTTTCATCACTCTTTCCTGATACGGTAATGGTTGGAATGGAATTGAGGGATAA
 
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JMSF008F05-           GGTGACTGAGTATGTGAAAGAACGGATTGTGGCATTGAGGGCAAATAATCCTGGCCAATG
rJMSF008F05+          GGTGACTGAGTATGTGAAAGAACGGATTGTGGCATTGAGGGCAAATAATCCTGGCCAATG
                      ____________________________________________________________
consensus             GGTGACTGAGTATGTGAAAGAACGGATTGTGGCATTGAGGGCAAATAATCCTGGCCAATG
 
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JMSF008F05-           AGAATATATCGGTTGTTCGAACTAATTCCATGAAGTACATTCCAAAATTACTTTGAAAAA
rJMSF008F05+          AGAATATATCGGTTGTTCGAACTAATTCCATGAAGTACATTCC-AAATTACTTTGAAAAA
                      ____________________________________________________________
consensus             AGAATATATCGGTTGTTCGAACTAATTCCATGAAGTACATTCCAAAATTACTTTGAAAAA
 
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JMSF008F05-           GGGCAGCTGA                                                  
rJMSF008F05+          GGGCAGCTGAAAAAGATGTTCTTTTTGTTTCCGGATCCCCACTTTAAAGAGAAGAATCAC
rJMFF041D09+                                                                     C
                      ____________________________________________________________
consensus             GGGCAGCTGAAAAAGATGTTCTTTTTGTTTCCGGATCCCCACTTTAAAGAGAAGAATCAC
 
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rJMSF008F05+          AGGCGACGCGTGATTAGTCCTCACCTGCTAGATGAGTATGCTTATGCTCTTGCTGTTGGT
rJMFF041D09+          AGGCGACGCGTGATTAGTCCTCACCTGATAGATGAGTATGCGTAGGCTCATGCTGTTGGT
                      ____________________________________________________________
consensus             AGGCGACGCGTGATTAGTCCTCACCTGCTAGATGAGTATGCTTATGCTCTTGCTGTTGGT
 
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rJMSF008F05+          GGTATTATATACACGATCACAGACGTGGAGGAGCTTGGGGAGTGGATG--AAGTCGTGTT
rJMFF041D09+          GGTATTAGATACACGATGGCAGACGTGCAGCAGCTTGGGGAGTGGATGACAGTCTGTGTT
                      ____________________________________________________________
consensus             GGTATTATATACACGATGGCAGACGTGGAGGAGCTTGGGGAGTGGATGACAGTTTGTGTT
 
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rJMSF008F05+          TGGAAGATCACCCATTGTTTGAAGCTCTCTCAAATGAAGAGCTCGAAGCTGATCCGGCTG
rJMFF041D09+          TGGAGGGTCACCCATTGTTGGCAGCTGTCTCGAATCAAGAGCTGCAGGTTGATCGGGCTG
                      ____________________________________________________________
consensus             TGGAGGGTCACCCATTGTTTGCAGCTGTCTCGAATGAAGAGCTGGAGGTTGATCGGGCTG
 
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rJMSF008F05+          TCAAACTCTTGACTACTGCAACCGAGGAAGGACAAAAGGTTGCCCGCAATGACGGACAGA
rJMFF041D09+          TCCAACTGTTGAGTCCTGCACCGGAGGAAGGTCAAAAGGTTGACCGCAATGACGGCCACC
                      ____________________________________________________________
consensus             TCCAACTGTTGAGTCCTGCACCGGAGGAAGGTCAAAAGGTTGCCCGCAATGACGGCCAGC
 
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rJMSF008F05+          CGTTCCAAGCTGTTTATAGACGCATTGCTATGCGATGATTCATCATTGCCAATCTGTTTG
rJMFF041D09+          CGTTCCAAGCTGTTTATAAAAGCA-TGTTATGCGATGATTCATCATTGTCAATCTGTCTG
                      ____________________________________________________________
consensus             CGTTCCAAGCTGTTTATAGACGCATTGTTATGCGATGATTCATCATTGTCAATCTGTTTG
 
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rJMSF008F05+          CTGATTGCTCATGCGTTGCAGTTGCAGTTGCAGTTTGGACACTCATC             
rJMFF041D09+          CTGATTGCTCAGGCGTTGCAGTTGCAGCTGCAGTATGGGCACTCATCATAAGTCACGATA
                      ____________________________________________________________
consensus             CTGATTGCTCATGCGTTGCAGTTGCAGTTGCAGTTTGGGCACTCATCATAAGTCACGATA
 
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rJMFF041D09+          GGATGATAAGCCCTATACACTGTGTCTTTTGCATTCTGTTTGGTATTATAGTGGCATAGT
                      ____________________________________________________________
consensus             GGATGATAAGCCCTATACACTGTGTCTTTTGCATTCTGTTTGGTATTATAGTGGCATAGT
 
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rJMFF041D09+          TCAGCTAATAGATTTAATCTTTAGCCCCCGGAATAGCAATTATGGAGGCAGCTAAATATG
                      ____________________________________________________________
consensus             TCAGCTAATAGATTTAATCTTTAGCCCCCGGAATAGCAATTATGGAGGCAGCTAAATATG
 
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rJMFF041D09+          GCATGGCTTCAGAGACGCATTATATTGTGTTGCAATACCTATGTGATTGATATTTTGAAT
                      ____________________________________________________________
consensus             GCATGGCTTCAGAGACGCATTATATTGTGTTGCAATACCTATGTGATTGATATTTTGAAT