| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040M22 | Sequence | 348 | 000884 (6) | ref|XP_009624390.1| | 3e-31 | PREDICTED: two pore calcium channel protein 1A-like [Nicotiana tomentosiformis] | 672 | 001176 (4) | sp|Q75VR0.1|TPC1B_TOBAC | 2e-63 | RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-depende |
| JMSF025C07 | Sequence | 684 | 000884 (6) | ref|NP_001268025.1| | 5e-61 | two pore channel 1 [Vitis vinifera] gb|ACH53197.1| two pore channel 1 [Vitis vin | 764 | 001176 (4) | ref|XP_006357480.1| | 3e-86 | PREDICTED: two pore calcium channel protein 1B-like [Solanum tuberosum] |
| JMSF037N05 | Sequence | 615 | 000884 (6) | ref|NP_001268025.1| | 3e-62 | two pore channel 1 [Vitis vinifera] gb|ACH53197.1| two pore channel 1 [Vitis vin | 670 | 001176 (4) | ref|XP_006357480.1| | 9e-68 | PREDICTED: two pore calcium channel protein 1B-like [Solanum tuberosum] |
| JMSF044A06 | Sequence | 746 | 000884 (6) | ref|XP_010097904.1| | 1e-82 | Two pore calcium channel protein 1A [Morus notabilis] gb|EXB72967.1| Two pore ca | 747 | 001176 (4) | ref|XP_006357480.1| | 7e-89 | PREDICTED: two pore calcium channel protein 1B-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF044A06+ ATAAGGCTCTTGATGCATGTACGAAGTTATCGTGCCTTTGTAGCAA
____________________________________________________________
consensus ATAAGGCTCTTGATGCATGTACGAAGTTATCGTGCCTTTGTAGCAA
. : . : . : . : . : . :
rJMSF044A06+ CATTTTTTGACTCTCATACCAAGTCTCATGCCATACTTAGGGACCATCTTCTGTGTATTG
rJMSF025C07+ TTTTGACTNTCATACCAAGTCTCATGCCATACTTAGGGACCATNTTCTGTGTATTG
____________________________________________________________
consensus CATTTTTTGACTCTCATACCAAGTCTCATGCCATACTTAGGGACCATCTTCTGTGTATTG
. : . : . : . : . : . :
rJMSF044A06+ TGCTTTTANTGCTCTCTTGGTTTACAGATCTTTGGTGGGATGGTCAATGCTGGGAACCCC
rJMSF025C07+ GGCTTTTATTGCTCTCTTGGTTTACAGATCTTTGGTGGGATGGTCAATGCTGGGAACCCC
rJMSF037N05+ TTTGGTGGGATGGTCAATGCTGGGAACCCC
rJMFF040M22+ AACCCC
____________________________________________________________
consensus TGCTTTTATTGCTCTCTTGGTTTACAGATCTTTGGTGGGATGGTCAATGCTGGGAACCCC
. : . : . : . : . : . :
rJMSF044A06+ AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
rJMSF025C07+ AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
rJMSF037N05+ AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
rJMFF040M22+ AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
____________________________________________________________
consensus AATTTAGATGGAACTGATCTTTCTGATAATGACTATTTGCTTTTCAACTTCAATGACTAT
. : . : . : . : . : . :
rJMSF044A06+ CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
rJMSF025C07+ CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
rJMSF037N05+ CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
rJMFF040M22+ CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
____________________________________________________________
consensus CCAAATGGAATGGTGACACTTTTCAATTTGTTGGTGATGGGTAACTGGCAATTGTGGATG
. : . : . : . : . : . :
rJMSF044A06+ CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
rJMSF025C07+ CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
rJMSF037N05+ CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
rJMFF040M22+ CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
____________________________________________________________
consensus CAGAGCTACAAGGAATTGACTGGGACTTCTTGGAGTTATGTCTACTTTATCAGTTTCTAT
. : . : . : . : . : . :
rJMSF044A06+ GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
rJMSF025C07+ GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
rJMSF037N05+ GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
rJMFF040M22+ GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
____________________________________________________________
consensus GTTATCACAGTTTTATGGCTCTTGAATTTGATTGTAGCATTTGTCTTGGAGGCTTTCCAA
. : . : . : . : . : . :
rJMSF044A06+ ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
rJMSF025C07+ ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
rJMSF037N05+ ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
rJMFF040M22+ ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
____________________________________________________________
consensus ACTGAGATGGATATGGAAACTTCAGCAATTTGTGTGGATGGAGAGAACAAGGAAGAAAGA
. : . : . : . : . : . :
rJMSF044A06+ GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
rJMSF025C07+ GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
rJMSF037N05+ GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
rJMFF040M22+ GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
____________________________________________________________
consensus GAAAGGGAGCGACGCCGTAAGTATGGCACAAAGACAAGGAGCCAGCGAGTTGATGCCCTC
. : . : . : . : . : . :
rJMSF044A06+ CTCCATCATATGCTGAGCTCTGAACTGACACAGTGCTCCAGCCCATAATTCTCTCCACTC
rJMSF025C07+ CTCCATCATATGCTGAGCTCTGAACTAACACAGTGCTCCAGCCCATAATTCTCTCCACTC
rJMSF037N05+ CTCCATCATATGCTGAGCTCTGAACTGACACAGTGCTCCAGCCCATAATTCTCTCCACTC
rJMFF040M22+ CTCCATCATATGCTGAGCTCTGAACTGACACAGTGCTCCAGCCCATAATTCTCTCCACTC
____________________________________________________________
consensus CTCCATCATATGCTGAGCTCTGAACTGACACAGTGCTCCAGCCCATAATTCTCTCCACTC
. : . : . : . : . : . :
rJMSF044A06+ CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
rJMSF025C07+ CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
rJMSF037N05+ CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
rJMFF040M22+ CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
____________________________________________________________
consensus CAGGTCATGAATCCCTGACGGAGAAACCAGTACATCATTATCCACTAGGAAGTAGACCTC
. : . : . : . : . : . :
rJMSF044A06+ TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
rJMSF025C07+ TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
rJMSF037N05+ TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
rJMFF040M22+ TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
____________________________________________________________
consensus TCGCATTAGGACGGACGTGTGCAGTTTCAGTTTGTGGATAGGCGCTTGGTGTTTAAATTA
. : . : . : . : . : . :
rJMSF044A06+ TTGTACCATAGTCGCTCAC
rJMSF025C07+ TTGTACCATAGTCGCTCACATGCAAACTGGTGATGGTATTATCAGGAATTCAGGACTTTT
rJMSF037N05+ TTGTACCATAGTCGCTCACATGCAAACTGGTGATGGTATTATCAGGAATTCAGGACTTTT
rJMFF040M22+ TTGTACCATAGTCGCTCACATGCAAACTGGTGATGGTATTATCAGGAATTCAGGACTTTT
____________________________________________________________
consensus TTGTACCATAGTCGCTCACATGCAAACTGGTGATGGTATTATCAGGAATTCAGGACTTTT
. : . : . : . : . : . :
rJMSF025C07+ GTTGGTGAATTTGAACCAGAATATTCTCTGTTGTGACTT
rJMSF037N05+ GTTGGTGAATTTGAACCAGAATATTCTCTGTTGTGACTT
rJMFF040M22+ GTTGGTGAATTTGAACCAGAATATTCTCTGTTGTGACTTTTTCCTTCAGTTTAAAGCACA
____________________________________________________________
consensus GTTGGTGAATTTGAACCAGAATATTCTCTGTTGTGACTTTTTCCTTCAGTTTAAAGCACA