Contig 001175:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040K17Sequence562001175 (3)ref|XP_006358585.1|135PREDICTED: uncharacterized protein LOC102601084 [Solanum tuberosum]567001175 (3)ref|XP_006358585.1|134PREDICTED: uncharacterized protein LOC102601084 [Solanum tuberosum]
JMFN015J04Sequence486001175 (3)ref|XP_010325548.1|114PREDICTED: uncharacterized protein LOC101260559 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFF040K17+                                                CTCCTAAATTAACTTTTAAAAAA
rJMFF040K17-                                          CTAATCTCCTAAATTAACTTTTAAAAAA
                      ____________________________________________________________
consensus                                             CTAATCTCCTAAATTAACTTTTAAAAAA
 
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JMFN015J04+                                                          ATTTAAGATTTTT
JMFF040K17+           GAAAGAAACACTTAAGAAGCTAAAAGCATAACGAAATTATGAACTGAATTTAAGATTTTT
rJMFF040K17-          GAAAGAAACACTTAAGAAGCTAAAAGCATAACGAAATTATGAACTGAATTTAAGATTTTT
                      ____________________________________________________________
consensus             GAAAGAAACACTTAAGAAGCTAAAAGCATAACGAAATTATGAACTGAATTTAAGATTTTT
 
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JMFN015J04+           AGTTTTATCATTAAAAGATCAAGTTCAATAAAGGTACCCCATAACCAAGAGAACAACTTA
JMFF040K17+           AGTTTTATAATTAAAAGATCAAGTTCAATAAAGGTACACCAAAAACAAGAGAAAAACTTA
rJMFF040K17-          AGTTTTATAATTAAAAGATCAAGTTCAATAAAGGTACACCAAAAACAAGAGAAAAACTTA
                      ____________________________________________________________
consensus             AGTTTTATAATTAAAAGATCAAGTTCAATAAAGGTACACCAAAAACAAGAGAAAAACTTA
 
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JMFN015J04+           GCAAACTCACAGGAATCTCCTCACAAACTTCCCCGGAAAATTCAATTCAATTAATCTCCC
JMFF040K17+           GCAAACTCACAGGAATCTCCTCACAAACTTCCCCGGAAAATTCAATTCAATTAATTTCCC
rJMFF040K17-          GCAAACTCACAGGAATCTCCTCACAAACTTCCCCGGAAAATTCAATTCAATTAATTTCCC
                      ____________________________________________________________
consensus             GCAAACTCACAGGAATCTCCTCACAAACTTCCCCGGAAAATTCAATTCAATTAATTTCCC
 
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JMFN015J04+           CTCAAAAGACGACGCGAAACTGTGGGGCATCGGAGCCACTGGCCGGAAGAATCTCCCAGC
JMFF040K17+           CTCAAAAGACGACGCGAAACTGTGGGGCATCGGAGCCACTGGCCGGAAGAATCTCCCAGC
rJMFF040K17-          CTCAAAAGACGACGCGAAACTGTGGGGCATCGGAGCCACTGGCCGGAAGAATCTCCCAGC
                      ____________________________________________________________
consensus             CTCAAAAGACGACGCGAAACTGTGGGGCATCGGAGCCACTGGCCGGAAGAATCTCCCAGC
 
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JMFN015J04+           GGCAGGGCTCGAGCTCTTCGGAAACCGGGCAGTAGCCGGCGAGAGTTACCTTGTCGACGG
JMFF040K17+           GGCAGGGCTCGAGCTCTTCGGAAACCGGGCAGTAGCCGGCGAGAGTTACCTTGTCGACGG
rJMFF040K17-          GGCAGGGCTCGAGCTCTTCGGAAACCGGGCAGTAGCCGGCGAGAGTTACCTTGTCGACGG
                      ____________________________________________________________
consensus             GGCAGGGCTCGAGCTCTTCGGAAACCGGGCAGTAGCCGGCGAGAGTTACCTTGTCGACGG
 
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JMFN015J04+           AAGCGGCGACCGCCCCGACCTTGTAACCGGTGATGTCAAGGGGTCTGGCATCCTCGATGG
JMFF040K17+           AAGCGGCGACCGACCCGAACTCGAAAACGGTGATGTCAAGGGGTCTGGAAACCTCGATGG
rJMFF040K17-          AAGCGGCGACCGACCCGAACTCGAAAACGGTGATGTCAAGGGGTCTGGAAACCTCGATGG
                      ____________________________________________________________
consensus             AAGCGGCGACCGACCCGAACTCGAAAACGGTGATGTCAAGGGGTCTGGAAACCTCGATGG
 
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JMFN015J04+           CTCCGTTCATGCCTGGGGCCTCCTGCCCAGCCTGGGAACAAATCTGGGGCTTGTGGGTTC
JMFF040K17+           CTCCGTTCATGCCTGGGGCCTCCTGCCCAGCCTGGGAAGAAATCTGGGGCTT-CGGGTTC
rJMFF040K17-          CTCCGTTCATGCCTGGGGCCTCCTGCCCAGCCTGGGAAGAAATCTGGGGCTT-CGGGTTC
                      ____________________________________________________________
consensus             CTCCGTTCATGCCTGGGGCCTCCTGCCCAGCCTGGGAAGAAATCTGGGGCTT-CGGGTTC
 
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JMFN015J04+           GGGGCGGGTTTTGAGGTTGAGTTGGAAGAAGAAGAATCAGCTTGTTTGTTGCCGCCTTTC
JMFF040K17+           GGGGCGGGTTTTGAGGTTGAGTTCGAAGAAGAAGAAGAAGCTTGTTTGTTGCCGCCTTTA
rJMFF040K17-          GGGGCGGGTTTTGAGGTTGAGTTCGAAGAAGAAGAAGAAGCTTGTNTGTTGCCGCCTTCA
                      ____________________________________________________________
consensus             GGGGCGGGTTTTGAGGTTGAGTTCGAAGAAGAAGAAGAAGCTTGTTTGTTGCCGCCTTTA
 
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JMFN015J04+           AACCAAGAGAGAATCCCCTTTGTTGTTGAGCTTCCAATTATCAGAGGGTGGAT       
JMFF040K17+           AACCAAGAGAGAATCCCCATTGTTGTTGAGCTTCCAAGAAACAGAGGGTGGAT       
rJMFF040K17-          AACCAAGAGAGAATCCCCATTGTTGTTGAGCTTCCAAGAAACAGAGGGTGGATGACAGAT
                      ____________________________________________________________
consensus             AACCAAGAGAGAATCCCCATTGTTGTTGAGCTTCCAAGAAACAGAGGGTGGATGACAGAT