Contig 001172:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039N07Sequence590019556ref|XP_011093323.1|1e-15PREDICTED: nuclear transcription factor Y subunit A-1-like [Sesamum indicum] re736001172 (2)ref|XP_010324494.1|3e-36PREDICTED: nuclear transcription factor Y subunit A-7 [Solanum lycopersicum]
JMSF037P01Sequence255001172 (2)ref|XP_009778037.1|1e-21PREDICTED: nuclear transcription factor Y subunit A-7-like [Nicotiana sylvestri

Alignment

This contig is upended


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rJMFF039N07+                                                      AAATGGAGGAGGAGCC
                      ____________________________________________________________
consensus                                                         AAATGGAGGAGGAGCC
 
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rJMSF037P01+              TACGTCAACGCGAAACAATATAATGGGATTTTAAGGCGAAGGCGGGTTAGAGCTAA
rJMFF039N07+          TGTNTACGTCAACGCGAAACAATATAATGGGATTTTAAGGCGAAGGCGGGTTAGAGCTAA
                      ____________________________________________________________
consensus             TGTNTACGTCAACGCGAAACAATATAATGGGATTTTAAGGCGAAGGCGGGTTAGAGCTAA
 
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rJMSF037P01+          AGCAGAACTTGAAAAGAAAGCCATCAAAGCCAGACGGCCATATCTTCATGAATCTCGCCA
rJMFF039N07+          AGCAGAACTTGAAAAGAAAGCCATCAAAGCCAGACGGCCATATCTTCATGAATCTCGCCA
                      ____________________________________________________________
consensus             AGCAGAACTTGAAAAGAAAGCCATCAAAGCCAGACGGCCATATCTTCATGAATCTCGCCA
 
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rJMSF037P01+          TCAACATGCACTGAGGAGGGAAAGGGGGTCGGGGGGCCGATTTCTCAATACAAAAAAGCT
rJMFF039N07+          TCAACATGCACTGAGGAGGGAAAGGGGGTCGGGGGGCCGATTTCTCAATACAAAAAAGCT
                      ____________________________________________________________
consensus             TCAACATGCACTGAGGAGGGAAAGGGGGTCGGGGGGCCGATTTCTCAATACAAAAAAGCT
 
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rJMSF037P01+          AAATGATATGAATTCGAAAACAGACGAGCATACGCAATCTGGTGCAACTGCTACAACAAA
rJMFF039N07+          AAATGATATGAATTCGAAAACAGACGAGCATACGCAATCTGGTGCAACTGCTACAACAAA
                      ____________________________________________________________
consensus             AAATGATATGAATTCGAAAACAGACGAGCATACGCAATCTGGTGCAACTGCTACAACAAA
 
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rJMFF039N07+          CTCGGGCCACTCATCGGGTTCAGAGCATTTGTGTACGAACAGCGAAGGGCAGTCTGCTGT
                      ____________________________________________________________
consensus             CTCGGGCCACTCATCGGGTTCAGAGCATTTGTGTACGAACAGCGAAGGGCAGTCTGCTGT
 
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rJMFF039N07+          AAAAGAAATGTGCAGAGCAGACAGCCATGGCTTCCCATCGGTGCATTTTACAGAGTCGAG
                      ____________________________________________________________
consensus             AAAAGAAATGTGCAGAGCAGACAGCCATGGCTTCCCATCGGTGCATTTTACAGAGTCGAG
 
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rJMFF039N07+          CGGGAATGAAAAGGGAAGTTTTCGTCATGGTCATCAAAACTGGAGCTTTATGGGAAACCA
                      ____________________________________________________________
consensus             CGGGAATGAAAAGGGAAGTTTTCGTCATGGTCATCAAAACTGGAGCTTTATGGGAAACCA
 
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rJMFF039N07+          GGCTCCTCACGGTGCGCCACCCAGCAATTGAAAACTCGTTCCTGTGTAATGGAGGGGTAA
                      ____________________________________________________________
consensus             GGCTCCTCACGGTGCGCCACCCAGCAATTGAAAACTCGTTCCTGTGTAATGGAGGGGTAA
 
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rJMFF039N07+          GACAATCCATCCCTTCTTACACGGGTCTGGCAATTCATTCTTGGCTTGTTTTACCTATGT
                      ____________________________________________________________
consensus             GACAATCCATCCCTTCTTACACGGGTCTGGCAATTCATTCTTGGCTTGTTTTACCTATGT
 
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rJMFF039N07+          GGGCAAGATGGGTAGAAACGAATAGACTCGGGCTGTGTCGGTCAGCCATTTGTTTCTATT
                      ____________________________________________________________
consensus             GGGCAAGATGGGTAGAAACGAATAGACTCGGGCTGTGTCGGTCAGCCATTTGTTTCTATT
 
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rJMFF039N07+          GCTTCTTCCCAGTGTTGTAGATATATGCTCTGATATATAGACTGAGAAGTTGTAGTGTGA
                      ____________________________________________________________
consensus             GCTTCTTCCCAGTGTTGTAGATATATGCTCTGATATATAGACTGAGAAGTTGTAGTGTGA
 
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rJMFF039N07+          TTATTTTGTGGTTGGCTTACCACAAAAAAGATAGTGGTGTTGAACTTATAGACAACAAAC
                      ____________________________________________________________
consensus             TTATTTTGTGGTTGGCTTACCACAAAAAAGATAGTGGTGTTGAACTTATAGACAACAAAC