Contig 001171:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019A17Sequence466001743 (4)gb|ADU56817.1|1e-77MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein118001171 (4)
JMFF022B10Sequence511001743 (4)gb|ADU56817.1|6e-89MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein131001171 (4)
JMFF039J03Sequence484001743 (4)gb|ADU56817.1|4e-65MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein146001171 (4)
JMFF039K15Sequence562001743 (4)gb|ADU56817.1|3e-84MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein148001171 (4)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF019A17+                                           TTTTTTTTTTTTTTTTTTTTTTTTTTT
rJMFF022B10+                                      GGNNNTTTTTTTTTTTTTTTNTTTTTTTTTTT
rJMFF039J03+                                           TTTTTTTTTTTTTTTTTTTTTTTTTTT
rJMFF039K15+                                           TTTTTTTTTTTTTTTTTTTTTTTTTTT
                      ____________________________________________________________
consensus                                         GGNNNTTTTTTTTTTTTTTTTTTTTTTTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF019A17+          TTTTTTTTTTTCTTTACCTTTTCTCTCTTTTGTTTAGTGATAAAGACATGCTTTTGATTC
rJMFF022B10+          TTTTTTTTTTTCTATACCTTTTCTCTCTTTTGTTTAGTGATAAAGACATGCTTTTGATTC
rJMFF039J03+          TTTTTTTTTTTCTTTACCTTTTCTCTCTTTTGTTTAGTGATAAAGACATGCTTTTGATTC
rJMFF039K15+          TTTTTTTTTTCTTATACCTTTTCTCTCTTTTGTTTAGTGATAAAGACATGCTTTTGATTC
                      ____________________________________________________________
consensus             TTTTTTTTTTTCTTTACCTTTTCTCTCTTTTGTTTAGTGATAAAGACATGCTTTTGATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF019A17+          AGTGCTGTTATAAGACAACTGGTTAACAT                               
rJMFF022B10+          AGTGCTGTTATAAGACAACTGGTTAACATTAATTCTGTG                     
rJMFF039J03+          AGTGCTGTTATAAGACAACTGGTTAACATTAATTCTGTGTTACAGTAATGACCATAATA 
rJMFF039K15+          AGTGCTGTTATAAGACAACTGGTTAACATTAATTCTGTGTTACAGTAATGACCATAATAA
                      ____________________________________________________________
consensus             AGTGCTGTTATAAGACAACTGGTTAACATTAATTCTGTGTTACAGTAATGACCATAATAA