Contig 001170:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015B12Sequence315001170 (5)gb|ABP35530.1|1e-07glycine and proline-rich protein [Ipomoea batatas]
JMFF039F15Sequence567001170 (5)775001170 (5)gb|ABP35530.1|7e-14glycine and proline-rich protein [Ipomoea batatas]
JMFN004C07Sequence371001170 (5)gb|ABP35530.1|5e-13glycine and proline-rich protein [Ipomoea batatas]
JMFN034K05Sequence613001170 (5)gb|ABP35530.1|1e-11glycine and proline-rich protein [Ipomoea batatas]

Alignment

This contig is upended


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rJMCP015B12+                                    AAACACTAACAATGATGTCACATTAACCATGAAA
JMFN004C07+                                    AAAACACTAACAATGATGTCACATTAACCATGAAA
                      ____________________________________________________________
consensus                                      AAAACACTAACAATGATGTCACATTAACCATGAAA
 
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rJMCP015B12+          GCTATGGATTCCATCACAGCCACAAAAGCTGAGTTTTCTGTTACCTATAGAGCATTAAAT
JMFN004C07+           GCTATGGATTCCATCACAGCCACAAAAGCTGAGTTTTCTGTTACCTATAGAGCATTAAAT
rJMFF039F15-                       TCACAGCCACAAAAGCTGAGTTTTCTGTTACCTATAGAGCATTAAAT
                      ____________________________________________________________
consensus             GCTATGGATTCCATCACAGCCACAAAAGCTGAGTTTTCTGTTACCTATAGAGCATTAAAT
 
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rJMCP015B12+          ATGTACCATAGTATAATTTATTCATAGGAACTAAATTAAAAGCATTAGCAGTCTTAAAGG
JMFN004C07+           ATGTACCATAGTATAATTTATTCATAGGAACTAAATTAAAAGCATTAGCAGTCTTAAAGG
rJMFF039F15-          ATGTACCATAGTATAATTTATTCATAGGAACTAAATTAAAAGCATTAGCAGTCTTAAAGG
                      ____________________________________________________________
consensus             ATGTACCATAGTATAATTTATTCATAGGAACTAAATTAAAAGCATTAGCAGTCTTAAAGG
 
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rJMCP015B12+          TCTTGGCATATGTTTTGCATAGAGGTCAAGAATGGATCACTTCCACTTCTTGAACTTCCC
JMFN004C07+           TCTTGGCATATGTTTTGCATAGAGGTCAAGAATGGATCACTTCCACTTCTTGAACTTCCC
JMFN034K05+              TGGCATATGTTTTGCATAGAGGTCAAGAATGGATCACTTCCACTTCTTGAACTTCCC
rJMFF039F15-          TCTTGGCATATGTTTTGCATAGAGGTCAAGAATGGATCACTTCCACTTCTTGAACTTCCC
                      ____________________________________________________________
consensus             TCTTGGCATATGTTTTGCATAGAGGTCAAGAATGGATCACTTCCACTTCTTGAACTTCCC
 
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rJMCP015B12+          ACCGCCGAACATCCCTCCATGCTTGCCGCGTTTGAACTTTCCGTGCTTGCCATGCTTGCC
JMFN004C07+           ACCGCCGAACATCCCTCCATGCTTGCCGCGTTTGAACTTTCCGTGCTTGCCATGCTTGCC
JMFN034K05+           ACCGCCGAACATCCCTCCATGCTTGCCGCGTTTGAACTTTCCGTGCTTGCCATGCTTGCC
JMFF039F15+                                CTTGCCGCGTTTGAACTTTCCGTGCTTGCCATGCTTGCC
rJMFF039F15-          ACCGCCGAACATCCCTCCATGCTTGCCGCGTTTGAACTTTCCGTGCTTGCCATGCTTGCC
                      ____________________________________________________________
consensus             ACCGCCGAACATCCCTCCATGCTTGCCGCGTTTGAACTTTCCGTGCTTGCCATGCTTGCC
 
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rJMCP015B12+          ATATTTTCCTTGCTTGAACTTCCCGTGCTTCATCTTTCCAT                   
JMFN004C07+           ATATTTTCCTTGCTTGAACTTCCCGTGCTTCATCTTTCCATGGCCGTAGTGACCAACACC
JMFN034K05+           ATATTTTCCTTGCTTGAACTTCCCGTGCTTCATCTTTCCATGGCCGTAGTGACCAACACC
JMFF039F15+           ATATTTTCCTTGCTTGAACTTCCCGTGCTTCATCTTTCCATGGCCGTAGTGACCAACACC
rJMFF039F15-          ATATTTTCCTTGCTTGAACTTCCCGTGCTTCATCTTTCCATGGCCGTAGTGACCAACACC
                      ____________________________________________________________
consensus             ATATTTTCCTTGCTTGAACTTCCCGTGCTTCATCTTTCCATGGCCGTAGTGACCAACACC
 
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JMFN004C07+           ATGTCCAACGCCATGTGGTACAT                                     
JMFN034K05+           ATGTCCAACGCCATGTGGTACATGAGAACCACTACCGTGGCTCAAGTGATGAGCACCATA
JMFF039F15+           ATGTCCAACGCCATGTGGTACATGAGAACCACTACCGTGGCTCAAGTGATGAGCACCATA
rJMFF039F15-          ATGTCCAACGCCATGTGGTACATGAGAACCACTACCGTGGCTCAAGTGATGAGCACCATA
                      ____________________________________________________________
consensus             ATGTCCAACGCCATGTGGTACATGAGAACCACTACCGTGGCTCAAGTGATGAGCACCATA
 
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JMFN034K05+           AGCAGCTGCTGCAGCCACGGCACCTCCAGCTAGCACTGTCCCCATACCAGGTCCATGATG
JMFF039F15+           AGCAGCTGCTGCAGCCACGGCACCTCCAGCTAGCACTGTCCCCATACCAGGTCCATGATG
rJMFF039F15-          AGCAGCTGCTGCAGCCACGGCACCTCCAGCTAGCACTGTCCCCATACCAGGTCCATGATG
                      ____________________________________________________________
consensus             AGCAGCTGCTGCAGCCACGGCACCTCCAGCTAGCACTGTCCCCATACCAGGTCCATGATG
 
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JMFN034K05+           CCCTGACTTGTGTGGTGCAGATGGGCCAGGGACAGGGTAACCTGAAGGGGGATAGGCTTG
JMFF039F15+           CCCTGACTTGTGTGGTGCAGATGGGCCAGGGACAGGGTAACCTGAAGGGGGATAGGCTTG
rJMFF039F15-          CCCTGACTTGTGTGGTGCAGATGGGCCAGGGACAGGGTAACCTGAAGGGGGATAGGCTTG
                      ____________________________________________________________
consensus             CCCTGACTTGTGTGGTGCAGATGGGCCAGGGACAGGGTAACCTGAAGGGGGATAGGCTTG
 
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JMFN034K05+           AGGGGGATAGGCTTGAGGGGGATACCCTCCTTGTGGATATCCAGAAGGTGGATATCCAGA
JMFF039F15+           AGGGGGATAGGCTTGAGGGGGATACCCTCCTTGTGGATATCCAGAAGGTGGATATCCAGA
rJMFF039F15-          AGGGGGATAGGCTTGAGGGGGATACCCTCCTTGTGGATATCCAGAAGGTGGATATCCAGA
                      ____________________________________________________________
consensus             AGGGGGATAGGCTTGAGGGGGATACCCTCCTTGTGGATATCCAGAAGGTGGATATCCAGA
 
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JMFN034K05+           AGGTGGATATGCCTGAGGAGGATATCCTGCAGGTGGATACCCTTGTTGAGGAGGGTATGC
JMFF039F15+           AGGTGGATATGCCTGAGGAGGATATCCTGCAGGTGGATACCCTTGTTGAGGAGGGTATGC
rJMFF039F15-          AGGTGGATATGCCTGAGGAGGATATCCTGCAGGTGGATACCCTTGTTGAGGAGGGTATGC
                      ____________________________________________________________
consensus             AGGTGGATATGCCTGAGGAGGATATCCTGCAGGTGGATACCCTTGTTGAGGAGGGTATGC
 
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JMFN034K05+           ACCAGGTGCTGGAGGATAATGACCACCATGATGAGCGAGATGAGAAAACAGCCCCTTATC
JMFF039F15+           ACCAGGTGCTGGAGGATAATGACCACCATGATGAGCGAGATGAGAAAACAGCCCCTTATC
rJMFF039F15-          ACCAGGTGCTGGAGGATAATGACCACCATGATGAGCGAGATGAGAAAACAGCCCCTTATC
                      ____________________________________________________________
consensus             ACCAGGTGCTGGAGGATAATGACCACCATGATGAGCGAGATGAGAAAACAGCCCCTTATC
 
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JMFN034K05+           AGACTCGTCATGCTTATCCTTTCCGCCCCCCATTTCTCTTAGTTAACAAAACAACTTGTA
JMFF039F15+           AGACTCGTCATGCTTATCCTTTCCGCCCCCCATTTCTCTTAGTTAACAAAACAACTTGTA
rJMFF039F15-          AGACTCGTCATGCTTATCCTTTCCGCCCCCCATTTCTCTTAGTTAACAAAACAACTTGTA
                      ____________________________________________________________
consensus             AGACTCGTCATGCTTATCCTTTCCGCCCCCCATTTCTCTTAGTTAACAAAACAACTTGTA
 
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JMFN034K05+           CAGAGATTCTCTTTGT                                            
JMFF039F15+           CAGAGATTCTCTTTGTGAAGTCGCGATTTGGAATGAAATGAAAGATGT            
rJMFF039F15-          CAGAGATTCTCTTTGTGAAGTCGCGATTTGGAATGAAATGAAAGATGTCGGTTCTCGACG
                      ____________________________________________________________
consensus             CAGAGATTCTCTTTGTGAAGTCGCGATTTGGAATGAAATGAAAGATGTCGGTTCTCGACG