Contig 001168:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038M20Sequence525003854 (3)ref|XP_004237363.1|7e-78PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [So723001168 (2)ref|XP_011102142.1|6e-55PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Se
JMSF043L07Sequence770003854 (3)ref|XP_004237363.1|5e-83PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [So732001168 (2)ref|XP_011102142.1|8e-57PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Se

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF043L07+ AANCAGTAACTAC
rJMFF038M20+ TAC
                      ____________________________________________________________
consensus AANCAGTAACTAC
 
. : . : . : . : . : . :
rJMSF043L07+ CCAAAAGGTCAGGAGAGCCTGGTTATGTGGGCAAAACCAATTCTGAACAGTGGGAAGTAT
rJMFF038M20+ CCAAAAGGTCAGGAGAGCCTGGTTATGTGGGCAAAACCAATTCTGAACAGTGGGAAGTAT
                      ____________________________________________________________
consensus CCAAAAGGTCAGGAGAGCCTGGTTATGTGGGCAAAACCAATTCTGAACAGTGGGAAGTAT
 
. : . : . : . : . : . :
rJMSF043L07+ GGGCAGTTGCTAGACCCAAGCTTGGGCAGTAATTATGATCGTGAACAGGTAGAGAAGATG
rJMFF038M20+ GGGCAGTTGCTAGACCCAAGCTTGGGCAGTAATTATGATCGTGAACAGGTAGAGAAGATG
                      ____________________________________________________________
consensus GGGCAGTTGCTAGACCCAAGCTTGGGCAGTAATTATGATCGTGAACAGGTAGAGAAGATG
 
. : . : . : . : . : . :
rJMSF043L07+ GTTCTTGCTGCTTCTCTGTGTGTTAGACGTGCTCCCCGAGCTCGGCCTCAAATGAGCCTT
rJMFF038M20+ GTTCTTGCTGCTTCTCTGTGTGTTAGACGTGCTCCCCGAGCTCGGCCTTAAATGAGCCTT
                      ____________________________________________________________
consensus GTTCTTGCTGCTTCTCTGTGTGTTAGACGTGCTCCCCGAGCTCGGCCTTAAATGAGCCTT
 
. : . : . : . : . : . :
rJMSF043L07+ ATTGTGAAGCTGCTCCAAGGCGAGGTTGAAACAATGAAATGGGCGAGGTTGCAGGTGAAT
rJMFF038M20+ ATTGTGAAGCTGCTCCAAGGCGAGGTTGAAACAATGAAATGGGCGAGGTTGCAGGTGAAT
                      ____________________________________________________________
consensus ATTGTGAAGCTGCTCCAAGGCGAGGTTGAAACAATGAAATGGGCGAGGTTGCAGGTGAAT
 
. : . : . : . : . : . :
rJMSF043L07+ GGGTCAGAGGCAAAGCTACGAAATAGTATGGAAGGTGGCGAGACATTGGATGATGACACA
rJMFF038M20+ GGGTCAGAGGCAAAGCTACGAAATAGTATGGAAGGTGGCGAGACATTGGATGATGACACA
                      ____________________________________________________________
consensus GGGTCAGAGGCAAAGCTACGAAATAGTATGGAAGGTGGCGAGACATTGGATGATGACACA
 
. : . : . : . : . : . :
rJMSF043L07+ TATTCGCAGCATTCTAATATACAATCCCACCTCAACCTTGCATTGCTAGGGGTAGAAGAG
rJMFF038M20+ TATTCGCAGCATTCTAATATACAATCCCACCTCAACCTTGCATTGCTAGGGGTAGAAGAG
                      ____________________________________________________________
consensus TATTCGCAGCATTCTAATATACAATCCCACCTCAACCTTGCATTGCTAGGGGTAGAAGAG
 
. : . : . : . : . : . :
rJMSF043L07+ GATTCAGTGTCGGTCAGCAGCATCGAGCAACATATCTCACTGGAGGACTATTTGCGAGGC
rJMFF038M20+ GATTCAGTGTCGGTCAGCAGCATCGAGCAACATATCTCACTGGAGGACTATTTGCGAGGC
                      ____________________________________________________________
consensus GATTCAGTGTCGGTCAGCAGCATCGAGCAACATATCTCACTGGAGGACTATTTGCGAGGC
 
. : . : . : . : . : . :
rJMSF043L07+ AGGTGGAGCCGGTCATCAAGCCTCGACTGACTCACTCAATAATCTCAATTTAAGTTTTAG
rJMFF038M20+ AGGTGGAGCCGGTCATCAAGCCTCGACTGACTCACTCAATAATCTCAATTTAAGTTTTAG
                      ____________________________________________________________
consensus AGGTGGAGCCGGTCATCAAGCCTCGACTGACTCACTCAATAATCTCAATTTAAGTTTTAG
 
. : . : . : . : . : . :
rJMSF043L07+ ATCCCGTGATTTTTGTGTACATTTCATTTCTTGTTTTCTTTTACCTAGCTAATTTCCAGC
rJMFF038M20+ ATCCCGTGATTTTTGTGTACATTTCATTTCTTGTTTTCTTTTACCTAGCTAATTTCCAGC
                      ____________________________________________________________
consensus ATCCCGTGATTTTTGTGTACATTTCATTTCTTGTTTTCTTTTACCTAGCTAATTTCCAGC
 
. : . : . : . : . : . :
rJMSF043L07+ TTCATTTTGGTTAATGCTGGGTCTTGGATGAGAGGTTGTTAGTGGTGTGCCCTCCTCCTT
rJMFF038M20+ TTCATTTTGGTTAATGCTGGGTCTTGGATGAGAGGTTGTTAGTGGTGTGCCCTCCTCCTT
                      ____________________________________________________________
consensus TTCATTTTGGTTAATGCTGGGTCTTGGATGAGAGGTTGTTAGTGGTGTGCCCTCCTCCTT
 
. : . : . : . : . : . :
rJMSF043L07+ CCCTTCCCTTCCCTTCCACGTGTTGTGTATGATTTGTCAAGTATAGGTTCAGTTCAATTG
rJMFF038M20+ CCCTTCCCTTCCCTTCCACGTGTTGTGTATGATTTGTCAAGTATAGGTTCAGTTCAATTG
                      ____________________________________________________________
consensus CCCTTCCCTTCCCTTCCACGTGTTGTGTATGATTTGTCAAGTATAGGTTCAGTTCAATTG
 
. : . : . : . : . : . :
rJMSF043L07+ TCATCATAATTGGAACCAAGAACTGAACCCCACCTTCAAGTGTATAAAAACACAAT
rJMFF038M20+ TCATCATAATTGGAACCAAGAACTGAACCCCACCTTCAAGTGTATAAAAACACAATTAAT
                      ____________________________________________________________
consensus TCATCATAATTGGAACCAAGAACTGAACCCCACCTTCAAGTGTATAAAAACACAATTAAT