Contig 001168:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038M20Sequence525003854 (3)ref|XP_004237363.1|7e-78PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [So723001168 (2)ref|XP_011102142.1|6e-55PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Se
JMSF043L07Sequence770003854 (3)ref|XP_004237363.1|5e-83PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [So732001168 (2)ref|XP_011102142.1|8e-57PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Se

Alignment

This contig is upended


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rJMSF043L07+                                                         AANCAGTAACTAC
rJMFF038M20+                                                                   TAC
                      ____________________________________________________________
consensus                                                            AANCAGTAACTAC
 
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rJMSF043L07+          CCAAAAGGTCAGGAGAGCCTGGTTATGTGGGCAAAACCAATTCTGAACAGTGGGAAGTAT
rJMFF038M20+          CCAAAAGGTCAGGAGAGCCTGGTTATGTGGGCAAAACCAATTCTGAACAGTGGGAAGTAT
                      ____________________________________________________________
consensus             CCAAAAGGTCAGGAGAGCCTGGTTATGTGGGCAAAACCAATTCTGAACAGTGGGAAGTAT
 
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rJMSF043L07+          GGGCAGTTGCTAGACCCAAGCTTGGGCAGTAATTATGATCGTGAACAGGTAGAGAAGATG
rJMFF038M20+          GGGCAGTTGCTAGACCCAAGCTTGGGCAGTAATTATGATCGTGAACAGGTAGAGAAGATG
                      ____________________________________________________________
consensus             GGGCAGTTGCTAGACCCAAGCTTGGGCAGTAATTATGATCGTGAACAGGTAGAGAAGATG
 
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rJMSF043L07+          GTTCTTGCTGCTTCTCTGTGTGTTAGACGTGCTCCCCGAGCTCGGCCTCAAATGAGCCTT
rJMFF038M20+          GTTCTTGCTGCTTCTCTGTGTGTTAGACGTGCTCCCCGAGCTCGGCCTTAAATGAGCCTT
                      ____________________________________________________________
consensus             GTTCTTGCTGCTTCTCTGTGTGTTAGACGTGCTCCCCGAGCTCGGCCTTAAATGAGCCTT
 
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rJMSF043L07+          ATTGTGAAGCTGCTCCAAGGCGAGGTTGAAACAATGAAATGGGCGAGGTTGCAGGTGAAT
rJMFF038M20+          ATTGTGAAGCTGCTCCAAGGCGAGGTTGAAACAATGAAATGGGCGAGGTTGCAGGTGAAT
                      ____________________________________________________________
consensus             ATTGTGAAGCTGCTCCAAGGCGAGGTTGAAACAATGAAATGGGCGAGGTTGCAGGTGAAT
 
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rJMSF043L07+          GGGTCAGAGGCAAAGCTACGAAATAGTATGGAAGGTGGCGAGACATTGGATGATGACACA
rJMFF038M20+          GGGTCAGAGGCAAAGCTACGAAATAGTATGGAAGGTGGCGAGACATTGGATGATGACACA
                      ____________________________________________________________
consensus             GGGTCAGAGGCAAAGCTACGAAATAGTATGGAAGGTGGCGAGACATTGGATGATGACACA
 
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rJMSF043L07+          TATTCGCAGCATTCTAATATACAATCCCACCTCAACCTTGCATTGCTAGGGGTAGAAGAG
rJMFF038M20+          TATTCGCAGCATTCTAATATACAATCCCACCTCAACCTTGCATTGCTAGGGGTAGAAGAG
                      ____________________________________________________________
consensus             TATTCGCAGCATTCTAATATACAATCCCACCTCAACCTTGCATTGCTAGGGGTAGAAGAG
 
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rJMSF043L07+          GATTCAGTGTCGGTCAGCAGCATCGAGCAACATATCTCACTGGAGGACTATTTGCGAGGC
rJMFF038M20+          GATTCAGTGTCGGTCAGCAGCATCGAGCAACATATCTCACTGGAGGACTATTTGCGAGGC
                      ____________________________________________________________
consensus             GATTCAGTGTCGGTCAGCAGCATCGAGCAACATATCTCACTGGAGGACTATTTGCGAGGC
 
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rJMSF043L07+          AGGTGGAGCCGGTCATCAAGCCTCGACTGACTCACTCAATAATCTCAATTTAAGTTTTAG
rJMFF038M20+          AGGTGGAGCCGGTCATCAAGCCTCGACTGACTCACTCAATAATCTCAATTTAAGTTTTAG
                      ____________________________________________________________
consensus             AGGTGGAGCCGGTCATCAAGCCTCGACTGACTCACTCAATAATCTCAATTTAAGTTTTAG
 
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rJMSF043L07+          ATCCCGTGATTTTTGTGTACATTTCATTTCTTGTTTTCTTTTACCTAGCTAATTTCCAGC
rJMFF038M20+          ATCCCGTGATTTTTGTGTACATTTCATTTCTTGTTTTCTTTTACCTAGCTAATTTCCAGC
                      ____________________________________________________________
consensus             ATCCCGTGATTTTTGTGTACATTTCATTTCTTGTTTTCTTTTACCTAGCTAATTTCCAGC
 
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rJMSF043L07+          TTCATTTTGGTTAATGCTGGGTCTTGGATGAGAGGTTGTTAGTGGTGTGCCCTCCTCCTT
rJMFF038M20+          TTCATTTTGGTTAATGCTGGGTCTTGGATGAGAGGTTGTTAGTGGTGTGCCCTCCTCCTT
                      ____________________________________________________________
consensus             TTCATTTTGGTTAATGCTGGGTCTTGGATGAGAGGTTGTTAGTGGTGTGCCCTCCTCCTT
 
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rJMSF043L07+          CCCTTCCCTTCCCTTCCACGTGTTGTGTATGATTTGTCAAGTATAGGTTCAGTTCAATTG
rJMFF038M20+          CCCTTCCCTTCCCTTCCACGTGTTGTGTATGATTTGTCAAGTATAGGTTCAGTTCAATTG
                      ____________________________________________________________
consensus             CCCTTCCCTTCCCTTCCACGTGTTGTGTATGATTTGTCAAGTATAGGTTCAGTTCAATTG
 
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rJMSF043L07+          TCATCATAATTGGAACCAAGAACTGAACCCCACCTTCAAGTGTATAAAAACACAAT    
rJMFF038M20+          TCATCATAATTGGAACCAAGAACTGAACCCCACCTTCAAGTGTATAAAAACACAATTAAT
                      ____________________________________________________________
consensus             TCATCATAATTGGAACCAAGAACTGAACCCCACCTTCAAGTGTATAAAAACACAATTAAT