Contig 001167:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP017G08Sequence624001167 (6)emb|CAD10147.1|8e-91phosphoenolpyruvate carboxylase [Cucumis sativus]
JMFF038L04Sequence561012962 (26)ref|XP_002513286.1|6e-1152-alkenal reductase, putative [Ricinus communis] gb|EEF48689.1| 2-alkenal reduct744001167 (6)emb|CAD10147.1|1e-110phosphoenolpyruvate carboxylase [Cucumis sativus]
JMFF043O03Sequence639012962 (26)ref|XP_009795584.1|229PREDICTED: phosphoenolpyruvate carboxylase-like [Nicotiana sylvestris]287001167 (6)dbj|BAA23421.1|5e-11phosphoenolpyruvate carboxylase [Glycine max]
JMFS023B08Sequence582001167 (6)emb|CAD10147.1|2e-113phosphoenolpyruvate carboxylase [Cucumis sativus]
JMFS111A05Sequence353001167 (6)gb|AEQ94112.1|2e-21putative phosphoenolpyruvate carboxylase [Elaeis guineensis] gb|AEQ94189.1| puta
JMSF042B12Sequence637012962 (26)ref|XP_009795584.1|384PREDICTED: phosphoenolpyruvate carboxylase-like [Nicotiana sylvestris]625001167 (6)ref|XP_009603289.1|266PREDICTED: phosphoenolpyruvate carboxylase-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS023B08-                                        TTTGGCTTGGATTTGGGGCTGCCTTCAAGCA
rJMFF038L04+                                             TTGGATTTGGGGCTGCCTTCAAGCA
                      ____________________________________________________________
consensus                                          TTTGGCTTGGATTTGGGGCTGCCTTCAAGCA
 
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JMFS023B08-           TATTATCGAGAAGGATATCCGAAATCTCCAGATGCTAAAAGACATGTACAAAGAGTGGCC
rJMSF042B12+              ATCGAGAAGGATATCCGAAATCTCCAGATGCTAAAAGACATGTACAAAGAGTGGCC
rJMFF038L04+          TATTATCGAGAAGGATATCCGAAATCTCCAGATGCTAAAAGACATGTACAAAGAGTGGCC
                      ____________________________________________________________
consensus             TATTATCGAGAAGGATATCCGAAATCTCCAGATGCTAAAAGACATGTACAAAGAGTGGCC
 
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JMFS023B08-           TTTCTTTAGAGTGACAATCGACTTGGTTGAGATGG-TTTTCGCAAAGGGAGACCCCGGTA
rJMSF042B12+          TTTCTTTAGAGTGACAATCGACTTGGTTGAGATGGTTTTTCGCAAAGGGAGACCCCGGTA
rJMCP017G08-          TTTCTTTAGAGTGACAATCGACTTGGTTGAGATGG-TTTTCGCAAAGGGAGACCCCGGTA
rJMFF038L04+          TTTCTTTAGAGTGACAATCGACTTGGTTGAGATGG-TTTTCGCAAAGGGAGACCCCGGTA
                      ____________________________________________________________
consensus             TTTCTTTAGAGTGACAATCGACTTGGTTGAGATGG-TTTTCGCAAAGGGAGACCCCGGTA
 
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JMFS023B08-           TTGCTGCATTGTACGATAATCTCTTAGTATCCAAAGATCTTTGGCCCTTTGGAGAAGAGC
rJMSF042B12+          TTGCTGCATTGTACGATAATCTCTTAGTATCCAAAGATCTTTGGCCCTTTGGAGAAGAGC
rJMCP017G08-          TTGCTGCATTGTACGATAATCTCTTAGTATCCAAAGATCTTTGGCCCTTTGGAGAAGAGC
rJMFF038L04+          TTGCTGCATTGTACGATAATCTCTTAGTATCCAAAGATCTTTGGCCCTTTGGAGAAGAGC
                      ____________________________________________________________
consensus             TTGCTGCATTGTACGATAATCTCTTAGTATCCAAAGATCTTTGGCCCTTTGGAGAAGAGC
 
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JMFS023B08-           TCAGGGCGAAATACGAAGAATCAAAAAGCTTTCTCCTTCAGGTGGCGGGACACAAGGATC
rJMSF042B12+          TCAGGGCGAAATACGAAGAATCAAAAAGCTTTCTCCTTCAGGTGGCGGGACACAAGGATC
rJMCP017G08-          TCAGGGCGAAATACGAAGAATCAAAAAGCTTTCTCCTTCAGGTGGCGGGACACAAGGATC
rJMFF038L04+          TCAGGGCGAAATACGAAGAATCAAAAAGCTTTCTCCTTCAGGTGGCGGGACACAAGGATC
                      ____________________________________________________________
consensus             TCAGGGCGAAATACGAAGAATCAAAAAGCTTTCTCCTTCAGGTGGCGGGACACAAGGATC
 
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JMFS023B08-           TTCTCGAAGGAGATCCCTACTTGAGGCAGAGGCTCAGGCTGCGTGATTCCTATATCACCA
rJMSF042B12+          TTCTCGAAGGAGATCCCTACTTGAGGCAGAGGCTCAGGCTGCGTGATTCCTATATCACCA
rJMCP017G08-          TTCTCGAAGGAGCTCCCTACTTGAGGCAGAGGCTCAGGCTGCGTGATTCCTATATCACCA
rJMFF038L04+          TTCTCGAAGGAGATCCCTACTTGAGGCAGAGGCTCAGGCTGCGTGATTCCTATATCACCA
                      ____________________________________________________________
consensus             TTCTCGAAGGAGATCCCTACTTGAGGCAGAGGCTCAGGCTGCGTGATTCCTATATCACCA
 
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JMFS023B08-           CGCTCAACGTGTGCCAAGCGTACACCCTGAAGCGTATCCGAGACCCCAGCTACAGCGTGA
rJMSF042B12+          CGCTCAACGTGTGCCAAGCGTACACCCTGAAGCGTATCCGAGACCCCAGCTACAGCGTGA
rJMCP017G08-          CGCTCAACGTGTGCCAAGCGTACACCCTGAAGCGTATCCGAGACCCCAGCTACAGCGTGA
rJMFF038L04+          CGCTCAACGTGTGCCAAGCGTACACCCTGAAGCGTATCCGAGACCCCAGCTACAGCGTGA
                      ____________________________________________________________
consensus             CGCTCAACGTGTGCCAAGCGTACACCCTGAAGCGTATCCGAGACCCCAGCTACAGCGTGA
 
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JMFS023B08-           AGGTGAGGCCCCATCTGTCCAAGGAGATCATGGAATCCAGCAAACCGGCCACCGAGCTGG
rJMSF042B12+          AGGTGAGGCCCCATCTGTCCAAGGAGATCATGGAATCCAGCAAACCGGCCACCGAGCTGG
rJMCP017G08-          AGGTGAGGCCCCATCTGTCCAAGGAGATCATGGAATCCAGCAAACCGGCCACCGAGCTGG
JMFS111A05+                 GGCCCCATCTGTCCAAGGAGATCATGGAATCCAGCAAACCGGCCACCGAGCTGG
rJMFF043O03+                                                             CCGAGCTGG
rJMFF038L04+          AGGTGAGGCCCCATCTGTCCAAGGAGATCATGGAATCCAGCAAACCGGCCACCGAGCTGG
                      ____________________________________________________________
consensus             AGGTGAGGCCCCATCTGTCCAAGGAGATCATGGAATCCAGCAAACCGGCCACCGAGCTGG
 
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JMFS023B08-           TGATGCTTAATCCCACGAGCGAGTATGCCCCCGGGCTGGAAGACACTCTCATCTTGACCA
rJMSF042B12+          TGATGCTTAATCCCACGAGCGAGTATGCCCCCGGGCTGGAAGACACTCTCATCTTGACCA
rJMCP017G08-          TGATGCTTAATCCCACGAGCGAGTATGCCCCCGGGCTGGAAGACACTCTCATCTTGACTA
JMFS111A05+           TGATGCTTAATCCCACGAGCGAGTATGCCCCCGGGCTGGAAGACACTCTCATCTTGACCA
rJMFF043O03+          TGATGCTTAATCCCCCGAGCGAGTATGCCCCCGGGCTGGAAGACACTTTCTTCTTGACCA
rJMFF038L04+          TGATGCTTAATCCCACGAGCGAGTATGCCCCCGGGCTGGAAGACACTCTCATCTTGACCA
                      ____________________________________________________________
consensus             TGATGCTTAATCCCACGAGCGAGTATGCCCCCGGGCTGGAAGACACTCTCATCTTGACCA
 
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JMFS023B08-           TGAAAGGAATTGCAGCTGGAATGCAGAACACCGGTTAAGCTTTGAAGAAGAGTCGTGAGT
rJMSF042B12+          TGAAAGGAATTGCAGCTGGAATGCAGAACACCGGTTAAGCTTTGAAGAAGAGTCGTGAGT
rJMCP017G08-          TGAAAGGAATTGCAGCTGGAATGCAGAACACCGGTTAAGCCTTGAAGAAGAGTCGTGAGT
JMFS111A05+           TGAAAGGAATTGCAGCTGGAATGCAGAACACCGGTTAAGCTTTGAAGAAGAGTCGTGAGT
rJMFF043O03+          TGAAAGGAATTGCAGCTGGAATGCAGAACCCCGGTTAAGCTTTGAAGAAGAGTCGTGAGT
rJMFF038L04+          TGAAAGGAATTGCAGCTGGAATGCAGAACACCGGTTAAGCTTTGAAGAAGAGTCGTGAGT
                      ____________________________________________________________
consensus             TGAAAGGAATTGCAGCTGGAATGCAGAACACCGGTTAAGCTTTGAAGAAGAGTCGTGAGT
 
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JMFS023B08-           CTTATGTTTGTA                                                
rJMSF042B12+          CTTATGTTTGTACGATGTGTGATAGAATAAGCTGTGGGGAAACACTGAGGAGAGTACTTT
rJMCP017G08-          CTTATGTTTGTACGATGTGTGATAGAATAAGCTGTGGGGAAACACTGAGGAGAGTACTTT
JMFS111A05+           CTTATGTTTGTACGATGTGTGATAGAATAAGCTGTGGGGAAACACTGAGGAGAGTACTTT
rJMFF043O03+          CTTATGTTTGTACGATGTGTGATAGAATAAGCTGTGGGGAAACCCTGAGGAGAGTACTTT
rJMFF038L04+          CTTATGTTTGTACGATGTGTGATAGAATAAGCTGTGGGGAAACACTGAGGAGAGTACTTT
                      ____________________________________________________________
consensus             CTTATGTTTGTACGATGTGTGATAGAATAAGCTGTGGGGAAACACTGAGGAGAGTACTTT
 
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rJMSF042B12+          ATACTTTAGTGTATCATCGAATAATGTTT                               
rJMCP017G08-          ATACTTTAGTGTATCATCGAATAATGTTTTGTTTGttTAATTAACTGAAAATATAGAGAC
JMFS111A05+           ATACTTTAGTGTATCATCGAATAATGTTTTGTTTGAATAATTAACTGAAAATATAGAGAC
rJMFF043O03+          ATACTTTAGTGTATCATCGAATAATGTTTTGTTTGAATAATTAACTGAAAATATAGAGAC
rJMFF038L04+          ATACTTTAGTGTATCATCGAATAATGTTTTGTTTGAATAATTAACTGAAAATATAGAGAC
                      ____________________________________________________________
consensus             ATACTTTAGTGTATCATCGAATAATGTTTTGTTTGAATAATTAACTGAAAATATAGAGAC
 
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rJMCP017G08-          ACGGTTTTATCTTTG                                             
JMFS111A05+           ACGGTTTTATCTTTG                                             
rJMFF043O03+          CCGGTTTTATCTTTGTAATCCCAGGCTTGTTTTT                          
rJMFF038L04+          ACGGTTTTATCTTTGTAATCCCAGGCTTGTTTTTCTCCATTCTTTTATCTTCATAATCCC
                      ____________________________________________________________
consensus             ACGGTTTTATCTTTGTAATCCCAGGCTTGTTTTTCTCCATTCTTTTATCTTCATAATCCC