Contig 001166:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030F18Sequence518000198 (6)ref|XP_006363650.1|1e-32PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S655001166 (6)ref|XP_004134584.1|1e-106PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic-like [Cucumi
JMFF033C18Sequence514000198 (6)ref|XP_006363650.1|6e-31PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S721001166 (6)gb|ACJ83525.1|2e-123unknown [Medicago truncatula]
JMFF035D23Sequence518000198 (6)ref|XP_006363650.1|1e-32PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S653001166 (6)ref|XP_004134584.1|6e-106PREDICTED: ferredoxin--NADP reductase, root isozyme, chloroplastic-like [Cucumi
JMFF037K05Sequence599000198 (6)ref|XP_006344529.1|5e-95PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S764001166 (6)gb|EYU19120.1|8e-137hypothetical protein MIMGU_mgv1a008446mg [Erythranthe guttata]
JMFF038J22Sequence583000198 (6)ref|XP_006344529.1|1e-53PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S750001166 (6)gb|EYU19120.1|1e-129hypothetical protein MIMGU_mgv1a008446mg [Erythranthe guttata]
JMFF051E04Sequence585000198 (6)ref|XP_006363650.1|3e-49PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [S574001166 (6)ref|XP_004231567.1|1e-71PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic [Solanu

Alignment

This contig is upended


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rJMFF037K05+           TGTGTTAGACGCGCTGTTTATTATGATCCCGAGACAGGAAAAGAAGATCNTTCCAAAAA
rJMFF033C18+                                                                  AAAA
rJMFF038J22+                                       CCGAGACAGGAAAAGAAGATCNTTCCAAAAA
                      ____________________________________________________________
consensus              TGTGTTAGACGCGCTGTTTATTATGATCCCGAGACAGGAAAAGAAGATCNTTCCAAAAA
 
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rJMFF037K05+          CGGAGTTTGCGGCAATTTTCTATGTGATTCAAACCCTGGAGACAAAGTGCAGATCACAGG
rJMFF033C18+          CGGAGTTTGCAGCAATTTTCTATGTGATTCAAAACCTGGAGACAAAGTGCAGATCACAGG
rJMFF038J22+          CGGAGTTTGCAGCAATTTTCTATGTGATTCAAAACCTGGAGACAAAGTGCAGATCACAGG
                      ____________________________________________________________
consensus             CGGAGTTTGCAGCAATTTTCTATGTGATTCAAAACCTGGAGACAAAGTGCAGATCACAGG
 
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rJMFF037K05+          TCCTTCTGGAAAGATAATGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
rJMFF033C18+          TCCTTCTGGAAAGATATTGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
rJMFF035D23+               CTGGAAAGATATTGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
rJMFF030F18+              TCTGGAAAGATATTGCTTTTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
rJMFF038J22+          TCCTTCTGGAAAGATAATGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
                      ____________________________________________________________
consensus             TCCTTCTGGAAAGATATTGCTTCTACCCGAAGATAACCCAAATGCCACCCACATTATGAT
 
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rJMFF037K05+          TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
rJMFF033C18+          TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
rJMFF035D23+          TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
rJMFF030F18+          TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
rJMFF038J22+          TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
                      ____________________________________________________________
consensus             TGCCACCGGTACCGGTGTGGCTCCCTTCAGAGGCTACCTTCGTCGCATGTTTATGGAATC
 
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rJMFF037K05+          CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
rJMFF033C18+          CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
rJMFF035D23+          CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
rJMFF051E04+                   ATTCAAGTTCAACGGCCTCGCTGGCTTCTTCCTAGGGGTGGCCAACACCGA
rJMFF030F18+          CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
rJMFF038J22+          CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
                      ____________________________________________________________
consensus             CGTCCCCACATTCAAGTTCAACGGCCTCGCTTGGCTCTTCCTAGGGGTGGCCAACACCGA
 
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rJMFF037K05+          CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF033C18+          CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF035D23+          CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF051E04+          CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF030F18+          CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
rJMFF038J22+          CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
                      ____________________________________________________________
consensus             CAGTCTCCTGTACGACGATGAGTTCGCCAAGTATCTCCAGGACTTCCCAGATAATTTCAG
 
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rJMFF037K05+          GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF033C18+          GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF035D23+          GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF051E04+          GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF030F18+          GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
rJMFF038J22+          GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
                      ____________________________________________________________
consensus             GTACGATCGTGTTCTTAGCCGAGAACAGAAGAACAAGAATGGAGGCAAGATGTATGTCCA
 
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rJMFF037K05+          AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF033C18+          AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF035D23+          AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF051E04+          AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF030F18+          AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
rJMFF038J22+          AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
                      ____________________________________________________________
consensus             AGACAAAATCGAAGAATACAGCGACGAGATCTTCAAACTGCTCGATGAAGGTGCACACAT
 
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rJMFF037K05+          CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF033C18+          CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF035D23+          CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF051E04+          CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF030F18+          CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
rJMFF038J22+          CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
                      ____________________________________________________________
consensus             CTATTTCTGCGGGTTGAAGGGCATGATGCCTGGAATTCAGGATACATTGAAGAGAGTCGC
 
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rJMFF037K05+          AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF033C18+          AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF035D23+          AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF051E04+          AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF030F18+          AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
rJMFF038J22+          AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
                      ____________________________________________________________
consensus             AGAGGAGAGAGGGCTGAGCTGGGAGACCAAGCTTTCGCAGCTTAAGAAGAACAAACAATG
 
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rJMFF037K05+          GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
rJMFF033C18+          GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
rJMFF035D23+          GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
rJMFF051E04+          GCATGTTGAAGTGTACTGA                                         
rJMFF030F18+          GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
rJMFF038J22+          GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
                      ____________________________________________________________
consensus             GCATGTTGAAGTGTACTGAGAATGTTGGGAACTTGAAAACTCAAAAGGAATCATGGATTA
 
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rJMFF037K05+          TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
rJMFF033C18+          TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
rJMFF035D23+          TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
rJMFF030F18+          TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
rJMFF038J22+          TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
                      ____________________________________________________________
consensus             TGTTCTCCTGTTTGAAACAGTAATTGTTGGAAAAATGTTTAGAATTCTTGAAACTCAAGG
 
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rJMFF037K05+          AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATAT              
rJMFF033C18+          AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATATTGTTAGGAATAA  
rJMFF035D23+          AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATATTGTTAGGAATAAA 
rJMFF030F18+          AGTCAAGGGAATCAAGATTGTATTCCTGTATTTGAAACAGAAATATTGTTAGGAATAAA 
rJMFF038J22+          AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATATTGTTAGGAATAAAT
                      ____________________________________________________________
consensus             AGTCAAGGGAATCAAGATTGTATTCCTGTA-TTGAAACAGAAATATTGTTAGGAATAAAT