| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015E07 | Sequence | 144 | 001164 (11) | 509 | 001164 (11) | ref|XP_006367725.1| | 6e-25 | PREDICTED: non-specific lipid-transfer protein 4-like [Solanum tuberosum] | |||
| JMFF018N21 | Sequence | 553 | 001164 (11) | ref|XP_009615065.1| | 8e-36 | PREDICTED: non-specific lipid-transfer protein 1 {ECO:0000303|PubMed:19958316}-l | 545 | 001164 (11) | ref|XP_009615065.1| | 7e-36 | PREDICTED: non-specific lipid-transfer protein 1 {ECO:0000303|PubMed:19958316}-l |
| JMFF026F24 | Sequence | 510 | 001164 (11) | ref|XP_009615065.1| | 2e-16 | PREDICTED: non-specific lipid-transfer protein 1 {ECO:0000303|PubMed:19958316}-l | |||||
| JMFF037P21 | Sequence | 584 | 001164 (11) | ref|XP_009615065.1| | 1e-35 | PREDICTED: non-specific lipid-transfer protein 1 {ECO:0000303|PubMed:19958316}-l | 568 | 001164 (11) | ref|XP_009615065.1| | 8e-29 | PREDICTED: non-specific lipid-transfer protein 1 {ECO:0000303|PubMed:19958316}-l |
| JMFN008L08 | Sequence | 604 | 001164 (11) | ref|XP_009615065.1| | 1e-35 | PREDICTED: non-specific lipid-transfer protein 1 {ECO:0000303|PubMed:19958316}-l | |||||
| JMFN019P05 | Sequence | 547 | 001164 (11) | ref|XP_009615065.1| | 4e-36 | PREDICTED: non-specific lipid-transfer protein 1 {ECO:0000303|PubMed:19958316}-l | |||||
| JMFN025F03 | Sequence | 435 | 001164 (11) | ref|XP_009615065.1| | 2e-21 | PREDICTED: non-specific lipid-transfer protein 1 {ECO:0000303|PubMed:19958316}-l | |||||
| JMFN040H15 | Sequence | 558 | 001164 (11) | ref|XP_009615065.1| | 5e-36 | PREDICTED: non-specific lipid-transfer protein 1 {ECO:0000303|PubMed:19958316}-l | |||||
This contig is upended
. : . : . : . : . : . :
JMFN025F03- GAGGGAGAGAGAGAGCACTAGTCTCGAGXXXXXXXXXXX
____________________________________________________________
consensus GAGGGAGAGAGAGAGCACTAGTCTCGAGNNNNNNNNNNN
. : . : . : . : . : . :
JMFN025F03- XXXXXXXXXCTTCAATACCTTTTCATATATAGAACTTTAATATATAAACAAGGGATTAAC
JMFN040H15+ TCAATACCTTTTCATATATAGAACTTTAATATATAAACAAGGGATTAAC
JMFF026F24+ CTTCAATACCTTTTCATATATAGAACTTTAATATATAAACAAGGGATTAAC
JMFN008L08- CTTCAATACCTTTTCATATATAGAACTTTAATATATAAACAAGGGATTAAC
JMFF018N21+ AACATGGGATTAAC
JMFN019P05+ ATAGAACTTTAATATATAAACAAGGGATTAAC
rJMFF018N21- ATTAAC
JMFF037P21+ TACCTTTTCATATATAGAACTTTAATATATAAACAAGGGATTAAC
rJMFF037P21- AACTTTAATATATAAACGAGGGATTAAC
____________________________________________________________
consensus NNNNNNNNNCTTCAATACCTTTTCATATATAGAACTTTAATATATAAACAAGGGATTAAC
. : . : . : . : . : . :
JMFN025F03- ATTTAACATA-GAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
JMFN040H15+ ATTTAACATA-GAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
JMFF026F24+ ATTTAACATA-GAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
JMFN008L08- ATTTAACATA-GAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
JMFF018N21+ ATTTAACATA-GAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
JMFN019P05+ ATTTAACATA-GAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
rJMFF018N21- ATTTAACATA-GAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
JMFF037P21+ ATTTAACATA-GAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
rJMFF015E07- AGCTCCCATTCTCCCAAACGANAGGGAGGAGCTCATCATA
rJMFF037P21- ATTTAACATAGGAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
____________________________________________________________
consensus ATTTAACATA-GAGGCATAGAGCTCCCATTCTCCCAAACGATAGGGAGGAGCTCATCATA
. : . : . : . : . : . :
JMFN025F03- TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
JMFN040H15+ TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
JMFF026F24+ TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
JMFN008L08- TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
JMFF018N21+ TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
JMFN019P05+ TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
rJMFF018N21- TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
JMFF037P21+ TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
rJMFF015E07- TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
rJMFF037P21- TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
____________________________________________________________
consensus TTATTTATTATTTTTTGATTGATCCCATACACACACGCCCACGCAAGTACTCCCTGCACC
. : . : . : . : . : . :
JMFN025F03- ATCAATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
JMFN040H15+ ATCAATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
JMFF026F24+ ATCAATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
JMFN008L08- ATCAATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
JMFF018N21+ ATCAATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
JMFN019P05+ ATCAATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
rJMFF018N21- ATCAATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
JMFF037P21+ ATCAATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
rJMFF015E07- ATCNATGGCGGCTTATTCCACCTTGGAGCANTCCATGTCGGNGCTGATCTTATACGGCAC
rJMFF037P21- ATCNATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
____________________________________________________________
consensus ATCAATGGCGGCTTATTCCACCTTGGAGCAGTCCATGTCGGCGCTGATCTTATACGGCAC
. : . : . : . : . : . :
JMFN025F03- GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCAGACTGACACCCTT
JMFN040H15+ GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCAGACTGACACCCTT
JMFF026F24+ GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCAGACTGACACCCTT
JMFN008L08- GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCAGACTGACACCCTT
JMFF018N21+ GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCAGACTGACACCCTT
JMFN019P05+ GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCAGACTGACACCCTT
rJMFF018N21- GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCAGACTGACACCCTT
JMFF037P21+ GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCAGACTGACACCCTT
rJMFF015E07- GCTNATGCCGCACTTGCTGANGACGCCGGCCGCCCTGNTGACGTCNANACTGACACCCTT
rJMFF037P21- GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCANACTGACACCCTT
____________________________________________________________
consensus GCTAATGCCGCACTTGCTGAGGACGCCGGCCGCCCTGTTGACGTCCAGACTGACACCCTT
. : . : . : . : . : . :
JMFN025F03- GGCGGCCGATTTTATGCAGGAGCAAACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
JMFN040H15+ GGCGGCCGATTTTATGCAGGAGCAGACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
JMFF026F24+ GGCGGCCGATTTTATGCAGGAGCAGACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
JMFN008L08- GGCGGCCGATTTTATGCAGGAGCAGACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
JMFF018N21+ GGCGGCCGATTTTATGCAGGAGCAGACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
JMFN019P05+ GGCGGCCGATTTTATGCAGGAGCAGACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
rJMFF018N21- GGCGGCCGATTTTATGCAGGAGCAGACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
JMFF037P21+ GGCGGCCGATTTTATGCAGGAGCAGACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
rJMFF015E07- GGCGGNCGATTTTATGCAGGAGCAGACNGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
rJMFF037P21- GGCGGCCGATTTTATGCAGGAGCAGACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
____________________________________________________________
consensus GGCGGCCGATTTTATGCAGGAGCAGACGGCCTGGCGGTCGGCGGTGGCGGCGGCGGCGTT
. : . : . : . : . : . :
JMFN025F03- GTAAAGTGAATTGATGCCGCTGCAGCAGGCCGCCGGC
JMFN040H15+ GTAGAGTGAATTGATGCCGCTGCAGCAGGCCGCCGGCACCTGCTTGCCGCTCCCCATGAT
JMFF026F24+ GTAGAGTGAATTGATG
JMFN008L08- GTAAAGTGAATTGATGCCGCTGCAGCAGGCCGCCGGCACCTGCTTGCCGCTCCCCATGAT
JMFF018N21+ GTAGAGTGAATTGATGCCGCTGCAGCAGGCCGCCGGCACCTGCTTGCCGCTCCCCATGAT
JMFN019P05+ GTAGAGTGAATTGATGCCGCTGCAGCAGGCCGCCGGCACCTGCTTGCCGCTCCCCATGAT
rJMFF018N21- GTAGAGTGAATTGATGCCGCTGCAGCAGGCCGCCGGCACCTGCTTGCCGCTCCCCATGAT
JMFF037P21+ GTAGAGTGAATTGATGCCGCTGCAGCAGGCCGCCGGCACCTGCTTGCCGCTCCCCATGAT
rJMFF015E07- GNANANNGAATTGATGCCGCTGCAGCANGCCGCCGGCACCTGCTTGCCGCTCCCCATGAT
rJMFF037P21- GNANAGTGAATTGATGCCGCTGCAGCAGGCCGCCGGCACCTGCTTGCCGCTCCCCATGAT
____________________________________________________________
consensus GTAGAGTGAATTGATGCCGCTGCAGCAGGCCGCCGGCACCTGCTTGCCGCTCCCCATGAT
. : . : . : . : . : . :
JMFN040H15+ GTAGCCCAGGCAGGGCATCAGGCTGCCGTACACGGTGCTGCAAGAGATGCCGGCCTCCGC
JMFN008L08- GTAGCCCAGGCAGGGCATCAGGCTGCCGTACACGGTGCTGCAAGAGATGCCGGCCTCCGC
JMFF018N21+ GTAGCCCAGGCAGGGCATCAGGCTGCCGTACACGGTGCTGCAAGAGATGCCGGCCTCCGC
JMFN019P05+ GTAGCCCAGGCAGGGCATCAGGCTGCCGTACACGGTGCTGCAAGAGATGCCGGCCTCCGC
rJMFF018N21- GTAGCCCAGGCAGGGCATCAGGCTGCCGTACACGGTGCTGCAAGAGATGCCGGCCTCCGC
JMFF037P21+ GTAGCCCAGGCAGGGCATCAGGCTGCCGTACACGGTGCTGCAAGAGATGCCGGCCTCCGC
rJMFF015E07- GTACCCCANGCAGGGCATCATGCTGCCGTACACGGTGCTGCAAAAGATGCCGGCCTCCGC
JMFF015E07+ GCTGCAAGAGATGCCGGCCTCCGC
rJMFF037P21- GTAGCCCANGCAGGGCATCANGCTGCCGTACACGGTGCTGCAANAGATGCCGGCCTCCGC
____________________________________________________________
consensus GTAGCCCAGGCAGGGCATCAGGCTGCCGTACACGGTGCTGCAAGAGATGCCGGCCTCCGC
. : . : . : . : . : . :
JMFN040H15+ GTAGGGCGCAATCGCCACCATGCAGAGAAGAACTGCTGCACATGCTAGCTTGTATTGTGT
JMFN008L08- GTAGGGCGCAATCGCCACCATGCAGAGAAGAACTGCTGCACATGCTAGCTTGTATTGTGT
JMFF018N21+ GTAGGGCGCAATCGCCACCATGCAGAGAAGAACTGCTGCACATGCTAGCTTGTATTGTGT
JMFN019P05+ GTAGGGCGCAATCGCCACCATGCAGAGAAGAACTGCTGCACATGCTAGCTTGTATTGTGT
rJMFF018N21- GTAGGGCGCAATCGCCACCATGCAGAGAAGAACTGCTGCACATGCTAGCTTGTATTGTGT
JMFF037P21+ GTAGGGCGCAATCGCCACCATGCAGAGAAGAACTGCTGCACATGCTAGCTTGTATTGTGT
rJMFF015E07- GNANGGCGCAATCGCCACCATGNAAAGAANAACTGCTGCACATGCTANCTTGTATTGAGN
JMFF015E07+ GTAGGGCGCAATCGCCACCATGCAGAGAAGAACTGCTGCACATGCTAGCTTGTATTGTGT
rJMFF037P21- GTAGGGCGCAATCGCCACCATGCAAAGAANAACTGCTGCACATGCTAGCTTGTATTGTGT
____________________________________________________________
consensus GTAGGGCGCAATCGCCACCATGCAGAGAAGAACTGCTGCACATGCTAGCTTGTATTGTGT
. : . : . : . : . : . :
JMFN040H15+ AGCCATTATATATATGTATGTATTGATGTA
JMFN008L08- AGCCATTATATATATGTATGTATTGATGTAATATGAATTTGGCTTCTTG
JMFF018N21+ AGCCATTATATATATGTATGTATTGATGTAATATGAATTTGGCTTCTTGTAATGAGAGGT
JMFN019P05+ AGCCATTATATATATGTATGTATTGATGTAATATGA
rJMFF018N21- AGCCATTATATATATGTATGTATTGATGTAATATGAATTTGGCTTCTTGTAATGAGAGGT
JMFF037P21+ AGCCATTATATATATGTATGTATTGATGTAATATGAATTTGGCTTCTTGTAATGAGAGGT
rJMFF015E07- AGCCATTATATATATGTATGTATTGATGTAATATGAATTTGGCTTCTTG
JMFF015E07+ AGCCATTATATATATGTATGTATTGATGTAATATGAATTTGGCTTCTTGTAATGAGAGGT
rJMFF037P21- AGCCATTATATATATGTATGTATTGATGTAATATGAATTTGGCTTCTTGTAATGAGAGGT
____________________________________________________________
consensus AGCCATTATATATATGTATGTATTGATGTAATATGAATTTGGCTTCTTGTAATGAGAGGT