clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF034A18 | Sequence | 483 | 000192 (6) | gb|KDO47061.1| | 1e-59 | hypothetical protein CISIN_1g014714mg [Citrus sinensis] | 758 | 001162 (6) | ref|XP_009630346.1| | 2e-81 | PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana tomentosiformis] |
JMFF037M24 | Sequence | 585 | 000192 (6) | ref|XP_002521172.1| | 5e-80 | diphosphomevalonate decarboxylase, putative [Ricinus communis] gb|EEF41203.1| di | 722 | 001162 (6) | ref|XP_009630346.1| | 1e-81 | PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana tomentosiformis] |
JMSF013F18 | Sequence | 504 | 000192 (6) | ref|XP_002521172.1| | 3e-77 | diphosphomevalonate decarboxylase, putative [Ricinus communis] gb|EEF41203.1| di | 777 | 001162 (6) | emb|CDO99902.1| | 9e-60 | unnamed protein product [Coffea canephora] |
JMSF014D03 | Sequence | 316 | 000192 (6) | gb|KJB78631.1| | 3e-42 | hypothetical protein B456_013G012400 [Gossypium raimondii] | 787 | 001162 (6) | ref|XP_006361468.1| | 2e-115 | PREDICTED: diphosphomevalonate decarboxylase-like [Solanum tuberosum] |
JMSF026F24 | Sequence | 636 | 000192 (6) | ref|XP_006367129.1| | 6e-74 | PREDICTED: diphosphomevalonate decarboxylase-like [Solanum tuberosum] | 749 | 001162 (6) | ref|XP_009630346.1| | 2e-67 | PREDICTED: diphosphomevalonate decarboxylase-like [Nicotiana tomentosiformis] |
JMSF048J08 | Sequence | 378 | 000192 (6) | ref|XP_002315441.1| | 3e-64 | mevalonate disphosphate decarboxylase family protein [Populus trichocarpa] gb|E | 787 | 001162 (6) | emb|CDO99902.1| | 4e-58 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF014D03+ TTATACAGCACCGAGCAAA
____________________________________________________________
consensus TTATACAGCACCGAGCAAA
. : . : . : . : . : . :
rJMSF014D03+ GGAGGTAGTACCCAAACGAGTAGTTCAAATGGAGGAAGCAATTAAAAATCGCGACTTTCC
____________________________________________________________
consensus GGAGGTAGTACCCAAACGAGTAGTTCAAATGGAGGAAGCAATTAAAAATCGCGACTTTCC
. : . : . : . : . : . :
rJMSF014D03+ ATCTTTTGCCCATCTGTCTTGTGCAGATAGCAATCAGTTTCATGCAGTCTGCCTGGATAC
____________________________________________________________
consensus ATCTTTTGCCCATCTGTCTTGTGCAGATAGCAATCAGTTTCATGCAGTCTGCCTGGATAC
. : . : . : . : . : . :
rJMSF014D03+ AACTCCCCCCATATTCTACATGAATGATACATCTCATAGGATAATTAGCTGTGTGGAGAA
rJMFF037M24+ CCCCCCATATTCTACATGAATGATACATCTCATAGGATAATTAGCTGTGTGGAGAA
____________________________________________________________
consensus AACTCCCCCCATATTCTACATGAATGATACATCTCATAGGATAATTAGCTGTGTGGAGAA
. : . : . : . : . : . :
rJMSF014D03+ ATGGAACCGTTCGGAAGGAACTCCACAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
rJMFF034A18+ CAGGTTGCTTACACTTTTGATGCGGGGCCAAATAC
rJMSF013F18+ CAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
rJMSF048J08+ CAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
rJMSF026F24+ CAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
rJMFF037M24+ ATGGAACCGTTCGGAAGGAACTCCACAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
____________________________________________________________
consensus ATGGAACCGTTCGGAAGGAACTCCACAGGTTGCTTACACTTTTGATGCGGGGCCAAATGC
. : . : . : . : . : . :
rJMSF014D03+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMFF034A18+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMSF013F18+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMSF048J08+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMSF026F24+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
rJMFF037M24+ AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
____________________________________________________________
consensus AGTTATGATTGCTCGCAATAGAAAGGCAGCTGCCCTTCTGGTTCAAAGACTGCTCTTTTA
. : . : . : . : . : . :
rJMSF014D03+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMFF034A18+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMSF013F18+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMSF048J08+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMSF026F24+ CTT--CTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
rJMFF037M24+ CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
____________________________________________________________
consensus CTTCCCTCCAAACTCGGATACTGATCTAAGCAGCTATGTCATAGGGGATAAATCAATACT
. : . : . : . : . : . :
rJMSF014D03+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMFF034A18+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMSF013F18+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMSF048J08+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMSF026F24+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
rJMFF037M24+ CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
____________________________________________________________
consensus CGGGGATGCTGGGATTAAGGACTTGAACGACGTGGAAGCACTTCCACCACCTCCAGAAAT
. : . : . : . : . : . :
rJMSF014D03+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
rJMFF034A18+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
rJMSF013F18+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
rJMSF048J08+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTANTTACTTCATCTGCNCGAGACC
rJMSF026F24+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
rJMFF037M24+ CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
____________________________________________________________
consensus CAAGGACAACATTCCAACTAAGAACAAGGGCGATGTTAGTTACTTCATCTGCACGAGACC
. : . : . : . : . : . :
rJMSF014D03+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMFF034A18+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMSF013F18+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMSF048J08+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMSF026F24+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
rJMFF037M24+ TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
____________________________________________________________
consensus TGGAAGAGGCCCGGTGGTTCTTAGTGATGAAACTCAAGCCCTCCTCAACCCTGAAACCGG
. : . : . : . : . : . :
rJMSF014D03+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMFF034A18+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMSF013F18+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMSF048J08+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMSF026F24+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
rJMFF037M24+ GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
____________________________________________________________
consensus GTTACCCAAGTAAAGGACCAAGCGCTTCCTATCGCAGAAGCTACCATTCTAAAATGGTAA
. : . : . : . : . : . :
rJMSF014D03+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
rJMFF034A18+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
rJMSF013F18+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
rJMSF048J08+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTNTTCTTTCCTTTTTCGTTTCTTCCTG
rJMSF026F24+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
rJMFF037M24+ AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
____________________________________________________________
consensus AGTCTTGTGTAACCATTACAATTCGAGGCATTTTCTTCTTTCCTTTTTCGTTTCTTCCTG
. : . : . : . : . : . :
rJMSF014D03+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMFF034A18+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMSF013F18+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMSF048J08+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMSF026F24+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
rJMFF037M24+ GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
____________________________________________________________
consensus GGTACCTTTTCGGGTTTTCCCATTAAACTCTTTTCGTGGATTCAGCTTTAAATATATGTT
. : . : . : . : . : . :
rJMSF014D03+ TATGTTGTCAATAGCTGTGTACTCATATATTGTT
rJMFF034A18+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
rJMSF013F18+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
rJMSF048J08+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCNCAGAACTACATGTTCTC
rJMSF026F24+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
rJMFF037M24+ TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
____________________________________________________________
consensus TATGTTGTCAATAGCTGTGTACTCATATATTGTTTAACTCTCACAGAACTACATGTTCTC
. : . : . : . : . : . :
rJMFF034A18+ TTGGAATTCATTCTTCCAGCATTCAGAAATAACTTTCTGTGATGGAT
rJMSF013F18+ TTGGAATTCATTCTTCCAGCATTCAGAAATA
rJMSF048J08+ TTGGAANTCATTCNTCCAGCATTCAGAAATA
rJMSF026F24+ TTGGAATTCATTCTTCCAGCATTCAGAAATA
rJMFF037M24+ TTGGAATTCATTCTTCCAGCATTCAGAAATAACTTTCTGTGATGGATTCCATCAATAAAG
____________________________________________________________
consensus TTGGAATTCATTCTTCCAGCATTCAGAAATAACTTTCTGTGATGGATTCCATCAATAAAG