Contig 001161:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF029I15+                                                               AAGGGTG
                      ____________________________________________________________
consensus                                                                  AAGGGTG
 
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rJMFF029I15+          TGAGTGCCAGGGATCAGATTCGTGAAGAGGTAAGAAGACTTGTGGAGCAATATAAGGACG
                      ____________________________________________________________
consensus             TGAGTGCCAGGGATCAGATTCGTGAAGAGGTAAGAAGACTTGTGGAGCAATATAAGGACG
 
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rJMFF029I15+          AAGAAATGAGCATAACCCTGGCAGGACACAGCTTAGGTTCATCACTGGCAACCTTAAATG
rJMFF037K23+              AATGAGCATAACCCTGGCAGGACACAGCTTAGGTTCATCACTGGCAACNTTAAATG
                      ____________________________________________________________
consensus             AAGAAATGAGCATAACCCTGGCAGGACACAGCTTAGGTTCATCACTGGCAACCTTAAATG
 
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rJMFF029I15+          CAGTGGACCTAGTAACCAATCCAATCAACAAAGACTCACCCATTCCCGTCACAGCCTTCC
rJMFF037K23+          CAGTGGACCTAGTAACCAATCCAATCAACAAAGACTCACCCATTCCCGTCACAGCCTTCC
                      ____________________________________________________________
consensus             CAGTGGACCTAGTAACCAATCCAATCAACAAAGACTCACCCATTCCCGTCACAGCCTTCC
 
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rJMFF029I15+          TATTTGCAAGCCCAAAAGTAGGGGAACGAAACTTCAAGAACGCCGTTTCAAAGCTCGCCG
JMFS160D08+                                   AACGAAACTTCAAGAACGCCGTTTCAAAGCTCGCCG
rJMFF037K23+          TATTTGCAAGCCCAAAAGTAGGGGAACGAAACTTCAAGAACGCCGTTTCAAAGCTCGCCG
                      ____________________________________________________________
consensus             TATTTGCAAGCCCAAAAGTAGGGGAACGAAACTTCAAGAACGCCGTTTCAAAGCTCGCCG
 
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rJMFF029I15+          ACAACCTTAAAATCCTCCGCCTCACCGACGCCAAAGACATCGTGCCTAAGCTGCCGCCAT
JMFS160D08+           ACAACCTTAAAATCCTCCGCCTCACCGACGCCAAAGACATCGTGCCTAAGCTGCCGCCAT
rJMFF037K23+          ACAACCTTAAAATCCTCCGCCTCACCGACGCCAAAGACATCGTGCCTAAGCTGCCGCCAT
                      ____________________________________________________________
consensus             ACAACCTTAAAATCCTCCGCCTCACCGACGCCAAAGACATCGTGCCTAAGCTGCCGCCAT
 
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rJMFF029I15+          TCGGAGTCAAAGTAAACACAACGTTGCCCATAATATCCTACGAGCATGTGGGCATGGAGT
JMFS160D08+           TCGGAGTCAAAGTAAACACAACGTTGCCCATAATATCCTACGAGCATGTGGGCATGGAGT
rJMFF037K23+          TCGGAGTCAAAGTAAACACAACGTTGCCCATAATATCCTACGAGCATGTGGGCATGGAGT
                      ____________________________________________________________
consensus             TCGGAGTCAAAGTAAACACAACGTTGCCCATAATATCCTACGAGCATGTGGGCATGGAGT
 
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rJMFF029I15+          TTCGCTTCGATGCTTCGAAATCGAACTATCTGGACGGCTTTAAGGCAAGCTGGCACACTC
JMFS160D08+           TTCGCTTCGATGCTTCGAAATCGAACTATCTGGACGGCTTTAAGGCAAGCTGGCACACTC
rJMFF037K23+          TTCGCTTCGATGCTTCGAAATCGAACTATCTGGACGGCTTTAAGGCAAGCTGGCACACTC
                      ____________________________________________________________
consensus             TTCGCTTCGATGCTTCGAAATCGAACTATCTGGACGGCTTTAAGGCAAGCTGGCACACTC
 
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rJMFF029I15+          TGGTGACTTACTTGCATGGGGTTGATGGGTTTCAAGGGTCTCAGGGAGGGTTTAAGCTTC
JMFS160D08+           TGGTGACTTACTTGCATGGGGTTGATGGGTTTCAAGGGTCTCAGGGAGGGTTTAAGCTTC
rJMFF037K23+          TGGTGACTTACTTGCATGGGGTTGATGGGTTTCAAGGGTCTCAGGGAGGGTTTAAGCTTC
                      ____________________________________________________________
consensus             TGGTGACTTACTTGCATGGGGTTGATGGGTTTCAAGGGTCTCAGGGAGGGTTTAAGCTTC
 
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rJMFF029I15+          ATGGAGATTTTGACGTTGCGCTTTTGAACAAGAATATCGATCAGTTGAAAGGTAATTACA
JMFS160D08+           ATGGAGATTTTGACGTTGCGCTTTTGAACAAGAATATCGATCAGTTGAAAGGTAATTACA
rJMFF037K23+          ATGGAGATTTTGACGTTGCGCTTTTGAACAAGAATATCGATCAGTTGAAAGGTAATTACA
                      ____________________________________________________________
consensus             ATGGAGATTTTGACGTTGCGCTTTTGAACAAGAATATCGATCAGTTGAAAGGTAATTACA
 
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rJMFF029I15+          GCCTTATGGCACCGGCGGAATGGTATGTTGTCAAGAACAGTGGGATGGTTCAGCAAGACG
JMFS160D08+           GCCTTATGGCACCGGCGGAATGGTATGTTGTCAAGAACAGTGGGATGGTTCAGCAAGACG
rJMFF037K23+          GCCTTATGGCACCGGCGGAATGGTATGTTGTCAAGAACAGTGGGATGGTTCAGCAAGACG
                      ____________________________________________________________
consensus             GCCTTATGGCACCGGCGGAATGGTATGTTGTCAAGAACAGTGGGATGGTTCAGCAAGACG
 
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rJMFF029I15+          ATGGGACTTGGATTCTTGACGATCATGAAGTAGATGATATATAATATTTGAAGAAAAATG
JMFS160D08+           ATGGGACTTGGATTCTTGACGATCATGAAGTAGATGATATATAATATTTGAAGAAAAATG
rJMFF037K23+          ATGGGACTTGGATTCTTGACGATCATGAAGTAGATGATATATAATATTTGAAGAAAAATG
                      ____________________________________________________________
consensus             ATGGGACTTGGATTCTTGACGATCATGAAGTAGATGATATATAATATTTGAAGAAAAATG
 
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rJMFF029I15+          ATTATTATAGTGTATAAATAAGTCTTCATGGCATTAGGCATACTTCCTTGAATGTACGTA
JMFS160D08+           ATTATTATAGTGTATAAATAAGTCTTCATGGCATTAGGCATACTTCCTTGAATGTACGTA
rJMFF037K23+          ATTATTATAGTGTATAAATAAGTCTTCATGGCATTAGGCATACTTCCTTGAATGTACGTA
                      ____________________________________________________________
consensus             ATTATTATAGTGTATAAATAAGTCTTCATGGCATTAGGCATACTTCCTTGAATGTACGTA
 
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rJMFF029I15+          AAATGTTGTT                                                  
JMFS160D08+           AAATGTTGTTTGATCAATAAGAAGAGTTGTTTTGTTACT                     
rJMFF037K23+          AAATGTTGTTTGATCAATAAGAAGAGTTATTTTGTTACTAAACAAAATACAAAAATAAAA
                      ____________________________________________________________
consensus             AAATGTTGTTTGATCAATAAGAAGAGTTGTTTTGTTACTAAACAAAATACAAAAATAAAA